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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0206200 |
| Transcript ID | LotjaGi6g1v0206200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol-glycan biosynthesis class F protein; TAIR: AT1G16040.1 phosphatidylinositol-glycan biosynthesis class F-like protein; Swiss-Prot: sp|O09101|PIGF_MOUSE Phosphatidylinositol-glycan biosynthesis class F protein; TrEMBL-Plants: tr|I3T4D5|I3T4D5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0206200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50332930..50338534) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATATTAAATGAGTGTTGATTGGGCCAAGCCCAAATCGTAGCTACGTTTTCGAATTTCCGACCTCCAGTGATCTATT CTCATCCATGGATCGCCGGGAAAAAACCAGCGATGTAACGACGGCGTCGAAGACCTCAACCGCGGAAGCATCACCGTCAA TCTCAGCTTCAGAAGCTTTCATAGTCAACGCGTTATGCGCTCTTGGCTTAGCTTTAGCCTTCTGGTTCGCTGACAGTATC TACTCCATCAACCTCGTCACCGATCCTTCTCGCACTCTTTTCTTCATCTGGGTATGTATAATCACACTCGGTTTATTTTT TACTTTTTTAGTTAATTTTCGGTTTTTTAATTCGTGTTTGTTTCTTTCTCGATCGTTGTTTAGATTCTAGAGCTCCCTAT CGTGATTCTTCTGTACAGTCGCTATCGACGGAATCGGCGAAAATGCTCGGTAATGCGTCGTGTTACTTCATTTCATAGAA ATCAGCAATTTCAATTTTCATTGACTTTTGTTTTCAGTCCACATTTTCCTTAAGATTTTGCCCTGTTCTGTTTTCATGTT ACTTGGATTCGCTGCAGTACCTGCGAGCCGTTGGAAGAGGGATTCTAGGAGTGCCAGTAGGTGAGTTGAAACTTTGGTTT TTCTACAATTGCTTATTTTCTTCCTATGGTAGGTAACTATGATGCAGTTTACAACTTTAGAGTCAGTTTGGTGTGGAGGG TGAAATTCTAAATTCTAATCATGCTAATAAAACCTTAATTAGTATCATATTCCACCTCTAAGTTCGTTGTTACTAATGTT TCTATTTGTGGTTAGATAATTAGTATGTTAGCTTTATAGTTTGCGCCGGTTCAAATGGCCAATTGTAGGAAGGAGAAAAT TTCTCCTTTGGAAGAATGCACATTCTTCCATCGACTGATCCTCAAAATCTTAACCGAACAAACGCTTTGATAGTTAGAAT TATGAATATCATTTTGTGCCAAATAGCATGCTACTTCGACATATCATTGTGATTTGATTCTCTTTCTATCTATCTCTCTT GTGTATATGTCTCTGTGTTTATATTCTTATCATCATAGTAGTCAATCGCGGATCGCGGCTTGTCGCGGATGACCCCCAAA AATGAAATCCCATACAAGGGAAGGCCGCTATTGGCCGCGAATAGCGGGATTTCGCGGCCGCGATCCGCTACACGACGGCG CTATAGCGCGCTATCGATAACTATGCTTATCATCCATGGTTTTGTTAAATTTTATGGGAGTGGCTTGCTGTTTTGTAAAA AATGATGATAGTTGGTGTATCTTTTACTCTACAGGGGCAATACTAAATTCTTTAGGAGCTATAGCTTTGGGGGCGCCTGT AACCTCTCAGTAAGTGAAATAAGTTGATTATGGAATAGAGTTATTTTTTTTTTCATATGCCACACTTTACATAGAGCTCA TTGTTGATGAGATAAAGGACTAGGAGTAAATAATTCCCATTGTTCCATTAATCCAAACAAGGGATACACTTCCTATTATG TATGTAAAGCCTTTTTAACTTCTACTTTGAAGACCTGCCAATACCTAGAGCATATGGTGACTTTTGCAAATTTACTTGAG ACAGGTATTTACCCAAGACTGTAAATTGGTCTCTTATGATGTCATTGTTCACGGTGAGTGATTATTTCATAGCCATTTTG TGTTTAGAATTACAGCTTCTTTAGACTATTTTGGTGTTCTCAATTGGAATTTTCTCATATTCATTCTGCATCTATTTACT TTTATATTCTGGTGTGTGGATATTCTTTTTCCTTTTCCTCTTTAAAAAAAATGACTTATGAGAATCTATTGCCTTATTAC ATTATTTACTACAATAAGAAATTAAAAATAGGTGTTTTACAATTCTTGTTTGTTTATGAGAACTTGGTACTCATGATCTG TTGCAATTGTGGAATGTTTCAGATTTCAGCCCTTGCTTCCTTTCTTGCATCTAATCATCTCGTCCTAGGAAAGCATTACC ACCCACATATATTGATGTGAAACTCAGTGAATTGCATCATTATCACTTTTAGACATGTAATATCAGTACACATTTTACTG GGAAGATTTTCAATTATTAAGGTCTCCTACAAATATATTTTCAAGCAGCGACATTAAATTACAAAATATTTCCATAAATT TTATTTTCAACATTTGTTGGGATAGACATTATTTAAGCTATGTGCCCATTGTTATGTCTACCTATATAAATGTACATCTT GTGCTGCTCCAGACAGTTCCTGCATCATGTGTTCTTGGTTCATCATGGGCTGACTGGCGACGTATATTTGCACAATCAAA GTATGTCCCTTTTGGTTGGTAGTTTCTTAATTCTTACCATTTTGGTTATGCAAAATATCTTCTATTGGGTTCTTCAGTTA GTTACTTTTACTCACATTATTGTAACCCTCATAATACATTCAGGCCAAATGGATTTGTTGAGTACTTGATTTGCTTACCA GCTCACGGAGCAGTTATTGGGGGATGGTTTGGGGCTTGGCCAATGCCACTTGACTGGGAGAGGCCGTGGCAGGTAATCTC TCTTTTCTTGTCCTTTGTCTTTGAATTCATTGACCATTGTTTACTGAAATTAGTAGGAGTAGCAGTTCTTACCAGCATTC TGCTATTTCAAAACACGGTTATTTTATTTTACTTTTTGAATGTATCATTTCATTTTAACTTCTTTGATCAAAGCACATGT TTCATAATTTATATTCCTTTAATGTTTCTGAAAGCAGCACCAGTCTTTCTACAATGCTGGAGGTTTGTTTCAGAAAGGGC CTTTGCGAACTTGGCCTTTATTCTTTTTATAATTCTATTTTGATTCCAATTTTATCATAGATAACTAACAATAAGATAGA TCTATTGAATGTGTAATGACTAATGGTTATAGCTTTTGATATTCAGATTAACATGTTTACTGTTTGGCATTGTTTATCCG TCTGAAAGATACAAGAATTGTTCTCCAAACCCAAAACTTGCAAGATTGTTAATTTTTTATTGTTATAAGCAATATGAATT GATTGGATGTATGGCTGATTTCATAGTGCTTTAAGTTTTATATGTTTGGCCGTTAAAGTCATACATCTCATCTTAAATTG TAGGAATGGCCTATTTCTGTAAGCTATGGAACCTTAGCCGGTTACATGGTGGCATTGGTTGCATCCTTGGGCTTTGTTGT TGTGCATGGTAGGTCACGGCATGTCAAAAAAGAATGAAGTAACAAGTGTCTGATCATGGTAATTGGTAAGTTACTTTACT AACAGCCAGTTTTTTATTTTTTCTTACTTTGTTGAAAAGATAAATAAGACTAATTATAATATTTTCATAATGTGATGATG TGAGAAGCGATAATCTAGCTACAAACACTTCTATTTATACTAATAATTTGGGTTTAAATACTAGTGGAGTATAAATAGTA CAAGCCTGTAGAAAAAGGCAAAGGAAAAGAAGTCCTGATCTGTCACAATTCGATGATACAGGGAAAAGAAGAAAAATTAT ACGTATTGTTAAAAGCTACATTATACTTCTCAATTAAAATTTTTATGTTGCGAGTTTTGCTAATATTTCTCTTTCATTAA ATTAAATATTCATCTATATGCTAAGATATTTTATGTTACAAAAAATATTTTTTATTGTTTAATTTAGACATAATGCTCAA ATATTTATCATTTCCTTGCTGGTTCTGCTTGCAATAACGGCAGTAAATTAAACGTTCCAATGGAAATGAGAAGGAAACTA AATACAGTTCACACACCTTTAGGTTCCAGTTCCTTTGGAATTTTATTTTGATTATTATCTTCGAAACTATTATTCTTACT ATAAAGTAGATAGCTCTCTATCTTTATTCTCTTAGTAATATTTTCTGGTACAGAAGTGAATTAAAGAGCCATGCACGGCA GAGAGCAAAACCAGCATATCAGACTCTTGCTCTGCAATCCTCTACGATCCCCATGCTTGAGAAGCTGAAAAAGAATAGGA AAAGCCTTCTTAGCTCAAGAGAAGTGAAAATATTTTTGTCCTGAGATTTCATTTTGATAATTGCTTTGGCAGGACAAAGA GTGTAATACTATTATAAAAATTAGATATATGCCATTTTGTTCACTTGGATATAGGACTCGGTCACAAGTCCATAACTATG CCCCCATGCTTAACAAGCAGCAAAGATTTCCCATTGGAATAACTTCAAATTTGTTATATACTTTCAAAGGTGTAGGTCAC TAACTTGCTCATTTTAAAATATAGGGGGCAGTAAGTTAGCATTTGCACACAAATTTCTTATAAAACTTGTTCTCAAACTA TTTTCTGTGATTAACTAGGGAAACCAATATACTCACCGGCTTGAGAAAGAGCCCAGTTGCTGTCCTGTTCGATTTGCCAA GCAAAATATCCAAATAGTCCCTTTTGCTTGGCATAAGAAACCTTGGCAGCAATACTCTGAGTATCATCATAGCCAAACCA ATCTGTCCCTTTGAAGCAGTAATTAGTAACAAATGTGGAGTTGTACACAATCTGCGCCCCAGCATTTTTTATATCCTTGT ATTTCACTTGCCCGAGCCCCTTTGTTGCTGGTGCGAATAGTCTATGTTGATTAGGATCTGACAAGCTCCACTTGAAACCG TAGAAGGGTAAACCCAGAGCTAGTTTGCTCTGTGGCACTCCTAGCTGAATCCATTTTGTGACCCCTTCATCCGCACTGAA TTGGCCTCTAGGGTTTCTCAAAGGAGCTGGTGGCTGTGTCAATGTTGGATAATCATCTGAGCGGAAAAGGTCATAAGCCA TGACATTGACCCAGTCCAAGTTGTTTGCTATGTCCTGACCTGGGTAGAATTGCAATTCTGTGATCTGGGCAGAGCCACCC ACTGCAGCAGATAGCAGCAGTGCTGGTTTGCCAGTGTTGCTAGAGTCTCTGGCCACAGCTGCTCTCCATTCCTTGATGAG TGAGCCAAAATTGGTCTTGTCTGTGTTTGTTGATGGGTATTCCCAGTCAAGATCAAGTCCATGGAAGTTGTTTTTTCTGG CTAGTTGGATTGAAGAGTCTATGAATGTTTTGCGGCTACTGGCTTGGCTAGCCATTTTGGAAAAATTGGCTGCCAAATCA TGACCGCCGCCGCCACCTATGGATAAAAGGGTTTTCACTGAAGGGTTTTTGGCCTGGAGTGTTTGAGTGAAGGTTGAGAA TTGAGCTGCGTTTGCAGGTGAAATGGTGAGTGTGTTGGTTTGAAGATCAAGGTCAGCAAATGCACAGAATAGGTGGGTGA AATGAGAAGGGTTAATGTCGGAAACTGAAAGACCACTTCCAGAATACCAGTAGCCACCTTTAATGGCAGCTTCCGCAGAA GAGAAGTAGAGTTGGAGAACCACAAGGAGAGTGAGAATCAGTAACGAAAGCTTTTGGGAGGTAGCCATTTTCTTGATGCC TCTGATGCAAATTGAGTCTGATGAATGATATATATAATTAACAGGCACGAAAACGAGCAATGTGAAATTCTCAAATAGAC AGTGTGCTTAATGTTTGACTATATGTCCATTATTATATTGACCTTTTCCAACCTGATCTTCAACTTAAATGTTTCATGAA AAATG
CDS sequence (LotjaGi6g1v0206200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGCCGGGAAAAAACCAGCGATGTAACGACGGCGTCGAAGACCTCAACCGCGGAAGCATCACCGTCAATCTCAGC TTCAGAAGCTTTCATAGTCAACGCGTTATGCGCTCTTGGCTTAGCTTTAGCCTTCTGGTTCGCTGACAGTATCTACTCCA TCAACCTCGTCACCGATCCTTCTCGCACTCTTTTCTTCATCTGGATTCTAGAGCTCCCTATCGTGATTCTTCTGTACAGT CGCTATCGACGGAATCGGCGAAAATGCTCGTACCTGCGAGCCGTTGGAAGAGGGATTCTAGGAGTGCCAGTAGGGGCAAT ACTAAATTCTTTAGGAGCTATAGCTTTGGGGGCGCCTGTAACCTCTCAGTATTTACCCAAGACTGTAAATTGGTCTCTTA TGATGTCATTGTTCACGACAGTTCCTGCATCATGTGTTCTTGGTTCATCATGGGCTGACTGGCGACGTATATTTGCACAA TCAAAGCCAAATGGATTTGTTGAGTACTTGATTTGCTTACCAGCTCACGGAGCAGTTATTGGGGGATGGTTTGGGGCTTG GCCAATGCCACTTGACTGGGAGAGGCCGTGGCAGGAATGGCCTATTTCTGTAAGCTATGGAACCTTAGCCGGTTACATGG TGGCATTGGTTGCATCCTTGGGCTTTGTTGTTGTGCATGGTAGGTCACGGCATGTCAAAAAAGAATGA
Protein sequence (LotjaGi6g1v0206200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRREKTSDVTTASKTSTAEASPSISASEAFIVNALCALGLALAFWFADSIYSINLVTDPSRTLFFIWILELPIVILLYS RYRRNRRKCSYLRAVGRGILGVPVGAILNSLGAIALGAPVTSQYLPKTVNWSLMMSLFTTVPASCVLGSSWADWRRIFAQ SKPNGFVEYLICLPAHGAVIGGWFGAWPMPLDWERPWQEWPISVSYGTLAGYMVALVASLGFVVVHGRSRHVKKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 16 | 234 | 219 | 9.1E-70 | – | |
| PANTHER | 16 | 234 | 219 | 9.1E-70 | – | |
| Phobius | 31 | 52 | 22 | - | – | |
| TMHMM | 31 | 48 | 18 | - | – | |
| Pfam | 44 | 219 | 176 | 3.2E-42 | ||
| Phobius | 53 | 63 | 11 | - | – | |
| TMHMM | 63 | 82 | 20 | - | – | |
| Phobius | 64 | 82 | 19 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 94 | 119 | 26 | - | – | |
| Phobius | 120 | 130 | 11 | - | – | |
| TMHMM | 131 | 152 | 22 | - | – | |
| Phobius | 131 | 154 | 24 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| Phobius | 187 | 205 | 19 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 206 | 225 | 20 | - | – | |
| Phobius | 226 | 235 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi6g1v0206200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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