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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0209500 |
| Transcript ID | LotjaGi6g1v0209500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAM domain (Sterile alpha motif) protein, putative; TAIR: AT2G12462.1 sterile alpha motif (SAM) domain protein; Swiss-Prot: sp|A0JPQ7|CS047_RAT Uncharacterized protein C19orf47 homolog; TrEMBL-Plants: tr|A0A1J7H6B8|A0A1J7H6B8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0209500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50692819..50695090) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTGACACTATTCTACTGAACTGACTGAACCAGAGCAATATCATATATGCATAGTTTTTATTATTTAAGGTGAGCAA GTGAGTAATAGTTAACAGCACTAAACAGGGCTTGCACATCAAGAGGTAGGGTCATTTGGACCTTTTTGATGAATTATGAA TATGATAGTTAGGCAATGGTGTTAGTAGTAGGTAACCTAATTGATTTTCCATTAATAACTTCGTTTTTCTTGGACCCCTG TCTCCATCTAACTTGGTTAAGTCCCATAAAAACAGCCGCAGATCTTGATCTCACGTTTGCTTCATTTTATTTTTATTCTT TTCAGATGAGACCAAAGTTTTTTTTAAGATTTAAGCAAATGACCTTTTTGTAAAGTACAAAATCCTATTTTGAACAAATA TCTTTTATGATCACCATTTCTAATTTCGAGAGTCCAAACCTGTTATCATAAATCATCTGCAGCATCCATGCCCGTGAGTT GCATGTCCTTCCCAAATGTCAAAAAATCTGCATATTGTTTTGCTGCTGTCACTCTCAGTCTCAACTATCATCCTAATTTC ACTCAAAGGAAATCAATAAACAAGTGAATATAATAAGAAAACAATGCAAATGGTCTAAAAAATAAAAATAAATATAACAA GATTAATCAATGTCTCCGGTTTAAGTCTTATGTACAAAAATAAAACTTGTTAGGAGAGCTCACCACTCCAGAAAATGGAT GTTTCAGTCTCGAATATGATTGTCTCCAACGAGGATAAGATACATGTATTAGAAAAACTTACAACAAATATTTATTTATC CACTCATTTATGCACTAACTCACCTCAAGTCTTCAGCTTCTCATCTATACCTTATAAATCAGAACACCCACCACAAACCT TAATGTATGCATCACATTTAATATCATATTCATCACTTTTCTCTTTTTTCTTCCTTTCTCAGCTGAATGTCTTTGAGGTG TCTGCACTATATGCAGATGTCTGCACTATGCAGATGTCCTCCAATCACTTTCCCCAAACTAAATAGCCATTTACCCACCA CATTTATGCACTAACTCTGAAGTCTTCAACTTCTCATCTATACCTTATAAATCAGAACATCCCCCTCAAAGCTTAATGTA TATACAACTGGCTAATAGCTACACACTCATTCTGGCACATCCCCATTTCCATAAACCATGGACTGGTTCTCCTGGTTATC CAGGACCAGCTTAGACCCTTCACTAGTCTATGAGTATGGTCTCGCTTTCGCCCGCAACGAGCTCCAGTTGGAAGATGCCA TCCACTTCAACCATGAGTTTCTTCAGAGCATGGGTGTTTCAATTGCCAAACACAGGCTAGAAATTCTCAAGCTTGCCAAG AAGGAAGATGAGGCAGCAGCAATGGCAACAAGCACCAAAAACCTTTCTGGGGTGATCAAGAAGTGTTTAAGAAAATGCCT CAGCAAGCTTGTTTTCCGTGAAGAAGAAGTAAAGGACACGCCATTGCCACCAGAGCCAAACTGGTACCAAGGGAAATGGA GAAGAGCACTGGTGACAAAACATGGAACAGAGGAACTCAGGGGAGAGAGGGGAATGCAGAGAAGCAGAACCATAGCAATG TCAGGGCCTTTAGATGGAAGAATGCATGAGAAGATGATGATCAGTAATAACAAGTTTTTGAAGTTGTCTGGTCCTCTTGA TGGAAAGATGCATGAGAGAATGGTAAATAGAAGTCCTGTAAGAACAACTAGTGATCATGGAAGGTTCATGAGCACTGCAA AGAGTCCAAGATTATCTGGTCCACTTGATGCAACAGCAAGAGCAGCATTGGTTAGCAATAGAAGTCCAAGGCTAATGATG CCTTCAGATGAATGGGTTGATAGCCCAATGGGTTACAACAGTCCCTATAATAACAAGATAAGAGGTGATTCTGATTATGA TGAAAATGCACTGTGGAGGACACTGTTTGAAGACCTTAAACCAACTTGATTATTTTGTGTTTGTTTTGTCTCTGTAAGCT TGGGTGGAAAGTGACACCAACGTTTTCTTATACAATAATTACAAGTAGCATATGAAATGCGATGTTTCCTGCAATTTTTT TCTCCTTCTTTCTCTCTTTCTTCATCAACTTGAGTGTTTATTATGTTATCGACCACTTCCACCTGACATTGGCATGAATT CAAGGGTTGAATAAAGGCAAGTTGTATAACTCCACTATCACTATGTCGTCATTTGATGTAATAATATACTATAATAGTGA CTTTTCCTAACAATAGCCCTAACTATAGTAAC
CDS sequence (LotjaGi6g1v0209500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGGTTCTCCTGGTTATCCAGGACCAGCTTAGACCCTTCACTAGTCTATGAGTATGGTCTCGCTTTCGCCCGCAA CGAGCTCCAGTTGGAAGATGCCATCCACTTCAACCATGAGTTTCTTCAGAGCATGGGTGTTTCAATTGCCAAACACAGGC TAGAAATTCTCAAGCTTGCCAAGAAGGAAGATGAGGCAGCAGCAATGGCAACAAGCACCAAAAACCTTTCTGGGGTGATC AAGAAGTGTTTAAGAAAATGCCTCAGCAAGCTTGTTTTCCGTGAAGAAGAAGTAAAGGACACGCCATTGCCACCAGAGCC AAACTGGTACCAAGGGAAATGGAGAAGAGCACTGGTGACAAAACATGGAACAGAGGAACTCAGGGGAGAGAGGGGAATGC AGAGAAGCAGAACCATAGCAATGTCAGGGCCTTTAGATGGAAGAATGCATGAGAAGATGATGATCAGTAATAACAAGTTT TTGAAGTTGTCTGGTCCTCTTGATGGAAAGATGCATGAGAGAATGGTAAATAGAAGTCCTGTAAGAACAACTAGTGATCA TGGAAGGTTCATGAGCACTGCAAAGAGTCCAAGATTATCTGGTCCACTTGATGCAACAGCAAGAGCAGCATTGGTTAGCA ATAGAAGTCCAAGGCTAATGATGCCTTCAGATGAATGGGTTGATAGCCCAATGGGTTACAACAGTCCCTATAATAACAAG ATAAGAGGTGATTCTGATTATGATGAAAATGCACTGTGGAGGACACTGTTTGAAGACCTTAAACCAACTTGA
Protein sequence (LotjaGi6g1v0209500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWFSWLSRTSLDPSLVYEYGLAFARNELQLEDAIHFNHEFLQSMGVSIAKHRLEILKLAKKEDEAAAMATSTKNLSGVI KKCLRKCLSKLVFREEEVKDTPLPPEPNWYQGKWRRALVTKHGTEELRGERGMQRSRTIAMSGPLDGRMHEKMMISNNKF LKLSGPLDGKMHERMVNRSPVRTTSDHGRFMSTAKSPRLSGPLDATARAALVSNRSPRLMMPSDEWVDSPMGYNSPYNNK IRGDSDYDENALWRTLFEDLKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 263 | 263 | 1.1E-91 | – | |
| PANTHER | 1 | 263 | 263 | 1.1E-91 | – | |
| Gene3D | 1 | 69 | 69 | 8.2E-8 | ||
| CDD | 2 | 62 | 61 | 1.34862E-8 | – | |
| SUPERFAMILY | 6 | 61 | 56 | 8.72E-6 | ||
| MobiDBLite | 180 | 201 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0209500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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