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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0210200 |
| Transcript ID | LotjaGi6g1v0210200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LEM3 (Ligand-effect modulator 3) family protein; TAIR: AT5G46150.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q67YS6|ALIS2_ARATH Putative ALA-interacting subunit 2; TrEMBL-Plants: tr|V7AYT3|V7AYT3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0210200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50765281..50771899) extracted from Lotus japonicus Gifu genome v1.2.
GATAAATTACTCTTTTTACATAGTTTCACATGAATGAGTTATACTAAAATTTTATAACTATCCATTTTCACCTCGATTCT ATGAGCGGTAATAACAAACAGTAACTTCCAAATCCAATGTAGCGGGTGGATTCTGACGAAATCATTCAAAGCGTGAACGG CGAACGAAGCAGTGGAGTCAAACGCTTGCGATACGCGGCGGCGAGGAGGAGGAGGGTTTGTTCGTTACGGTTGCGTGCCA CCATCACTTTCTCTGCAACCTCAACAAGCCAAGAATCTCTACATACTCACTCCTGTACACATTCTTCTTCCCTTTCCAGA TTACCTATTTCTTCTCTTTCGCTCCACGCCATGATCTGCACATAACTCCTGGTATAATATATATTCCTATTTTCTCGATT CCTCAGATTCGTTGATCATAATTTGGTTCAGTTAGAGATTAGATAGCTCTCGTTTTTGTAATTGATTATCTGTATTGTGA GAATTCATGCTCAATTTGATGATTCATTCCTGTCAGTTATTGAATCAGCTTTTCGATTCGAATTTCTCTGTATTGCAATG TTGAGCAAAACCTAGTGTGGTGGTGTACATACATTGGATAGTTCAATATGTTGACTGACACCTCTGGAGCTCGGGAAATT GTGATAATGGATCTCGATGAAGAAAGTTCGACAACATCGGTTAGCAGGAGAGTGCCGGCAATTCCAGGTCGGCCGGCACA AAAGGGAGGTCAGTGTTACTTTGACTCTATTGCAAACAGGTTTCTGTAGGAGATGTGCTAGAATATCTGTTTCCATTTAT TCACTTCTAAAAACCTGTATTGTTGACATTTATTTATGCACTCCGAATTTCGAAACATTCCGTATTTATCGAACCCTAGT GCATAAAGAATTAGGCAATCGTTTCGCGGATGAATCATATTTCATTGCATTTTATCATTTAGCAATGAATCTTGTTATGA TATTTAGCCTTTACTTAGACCAAAAGTAAGTCACAGTTATCGAATGGATTGAAATCTTATTAGATATGTTTCTTCTTCGG AGAAGTTTCTTTGTATTTGACTTTTTTGTTTCATCTATTTTCTTAATGGAACTTGTACTGAATGCCATTGTGGTGGTTTT GCAGCTTTCTATCAGTTTACACAGCAGAACCTTCCAGCATGTAAACCTGTCCTTACACCTAGAGCAGTTAGTTCTTTGAC AACACTTTAAGTTTCATGACACCTTATTCTACTAAATGTGCATACCAAGTCTCAATCATGTTCTGTGCAGGTCATTGCTA CGTTTCTATTGATGGGTTTCATTTTCATTCCTGTTGGACTTGTTACACTTCGTGCTTCGTATAGTGTATGAATATTTCTC CTTCCTTCAATGTTTTGCATTTAAATTTTTTCGTTCTGCCTTCAAAATCCTTGTGCTTACAATATTAATTAACCTATGGA TTGTAGGTTGTTGAAATTGAGGACAGGTATGACATTGATTGTGTACCGGATCAATTTAAAAGTAATAAGGTCGCATATAT CAAAGATGACTCAATCTCCAAAAACTGTTCACGATTCTTAAAGGTGATGATTCATTTTTTGATTGATCACATCATTCATT GATTATTGCTTCGGGGTTAAGTGTTGTACAATAAAATAAATTGTTTCCTCTTAGTTCCATACTTCTCCATTTAAACGAGC GGTTGGCATTCTCTTTCTTAAACTTTTGTTCTCTCTAACTCTACCCAAAAGTTAGCTCATGATACTAGCCTTGAGGTCGG ATAGATTGCACTGGGAAATCCACAGGGCCATGTTGATTTTTGTACAGTGGACGGTGGCCCAATATCAAATATAGGATAGA ATCTGATACCATCTTGAATTTGGGTTAGACTTAACTCTACCTCTGAAGCTAGCTTGTGCAGTGAGGATGGTGTGATGTGG GACCTCAACACAGATACCATCTTAAACTTGAGCTCACTGTTTGGGAGTTAGGCTTAGCCCAAATGTTAGACTCTTAAAAT CTTTGGATGTTGCCACAGTATTCTCAAAGTTTTCTATTGACTGCTTCAGTGGCTTTGCCAATTATTATTGTTAGGTTTGG TTGAACATTGGACAACAGATTTAGATGTAATAGATGGTGGTCTCATTGATATTTAGAAAGTTATTACTTCTTAAATTTAT CCGCTGCTCTCTGGATGGTAGCATTGTAGGTTTATACTCCTCATCACTTACTGCCTTTTCTTCTCAAAGTATTCTTAGTA TTTCATAATAGTTTGGTTGAATAAGGAGTAGGAGCAAATCTTCATAATCAGATGCAACTTTTATTGCTCAATATGTTAGA AAAGTTCTCTTATTGGCTTAAATTCACTTATTTAAGTTGAAGTTTACATATGCAAGTAAGTTTTGCATGTTTATATGTTC TGATTCAAGAGAAATATTAGTGAATCCTTAACTTTTAATCACACAGCGGAGGTTCTATTATACAGACCAAATGTACAAGA TACCCTGTTTATGTTGCTCTGGTATTTAAAATTTCCAGTTACTGTTCTGTTTTGAAGACACAAATTAAACCATGTAAACT TTCGAAACTTTTCTATCTAAAATTTAATTGTCAAAGTTCCTGAAATAATATCTACCAAAATTCTTTTTTGTTGGAAATTA AACTTCCCATACTTTTCTGTGATAGAAATATAAAATACTTATCAGAAAGAAGACAGAAAATAGAAACAGCTAGAATAAGA GACAAAAGATTATAAACATCCTCCTGAAAGGGAATAGGAAAAATCAAGAGCAAAACAATGGAGACTAACTTATAGAGTAA TACTAATTTAACCATAGGTTTCTTTGTGACTTGGATGCTGTGTTACAATTAGATTTTGCAAGCAGAGATGAGAAGATGGA AATTGCCTAGAAAGTTTAGGAACAAATACTCGCCCCTTATCATGCTTCCGATAGTGGCATTGTGTGATACATGGATGGGT GAAACATCAGACTGGGAATGTAGAAAACTATATGTATTTCATATCGTGCTAAGAGTTTTCCTCCCTTCAAGAGAAAAGGA GGCCTGCTGTTGCTGATATTATGAATCACGGGAATCTTATCAGGTTATATATTGTGTTGGCTTATGTCATTCTTCAAAAG AACATATTATTCTATGATATTTACAACTACGTCCATGCTTTTCTGCTGTAACTTCACTTGCTTTTTCCTCCCGCATTTAA TCATAATTAAGAATTTTGGACCGGGTGCTTAACTGCTGATATCTTTGTTGGGAAAGTTACTGATACAGTTGATCTTTTCA CCGTCCCTTAATCGTGTTTTAAAACTTGTTTGTAGGTACCTAAGCCAATGAGAGCACCGATTTATATCTATTATCAGCTT GATAACTATTACCAGAACCACCGACGGTAAGGATTCTTTATTTTCGTATTTTAAATACAGTGGATAAGTATTCTTTTGAG GAAGTCATTGCTTCACCTTTTCATCTTTTATCCTGTCTCTTTCGCGTTAATCTCTATTTATTTGTTTTCTTTTGGTTGAT ATACAAGTTATCTATGTACAATTTATTGGTCCTCTCAATATTATAAATCATTTATTTTGAGGCAATGCTACTGTGTGTCT GTTCAGTTGAGCAAAGTTGAATATATGCCCTGTTATGAGGCCAGTTGGTTTCTTGTATGTATTATAATTTTTTTATTAGG TTGTATTTGGACCTATTGACATGTGTCCTAAGCAACTCCGAATTTGTTTCCCTCAAGTTTAAATTTATAGAGAATTTATG TCCATTAACTATTCACCAATTGTTTGAGATGAACTATAGGTCCTCTTGCTGGTTGTTAAATTTTGAAAATTATTGCTAGC ATCTCATAGATTTATTGTCTTTGAATTTAATATTATGTGCTGTATCTAAAAGCATTTCAGGTCCAGTGAATGTCTCTTAA ATTATAGTCAATATAATGAAATATTTTTCTTTATTCCTGCTTCATTCCTTTCCACTAAAAACATAAATCTTCTATATTTA CATTTTCATGCTTTTATTTCTCAACTGCTCATTCAAACCTTCATAATTAATCCAGGTATGTAAAAAGTAGAAGTGATCAG CAACTCTTACATGGTCTTGGATACAATCACACCAGTTCTTGTAAACCTGTAGAGTCTTCTGATAATCTTCCAATTGTACC TTGTGGGTTGATAGCATGGAGTATGTTCAATGATACATATATGTTCAATCGTGGGCCAACAAAATTGAAGGTCAATAGGA AGAACATTGCGTGGAAGAGCGATCGCGATCACAAATTTGGAAAGCATGTTTACCCGTTTAATTTTCAGAATGGGACATTG ATTGGGGGTGGAAAGTTGGATCAAAGTGTTCCTGTAAGTTCTAAGCTTTTGAATTGTATATGGAGTTATGGACACTTTTT TTTCATCTTTTTGTCGTCATTTCTTCTTGTCATGGCTTGTCTTTGTTCGTATTTAAAATATCTTTGTTTCCTGACCTTTG CCTAAAATGTTAATTTATTTGGCAGAATCATAATTCCCTGATAATTAAAAATACTGATTCCCAGTTGTTTAAAAATGATA GCAGTGTTTGTGTTTCCATGCATTGATGTTTACTATCATCTCTGTTTGGGGGGGGGGGGGTAGATGTAAAATCAACATTT GGCAGAATCATAATTCCCTGATAATTAAAAATACTGATTCCCAGTTGTTTAAAAATGATAACAGTGTTTGTGTTTCCATG CATTGATGTTTACTATCATCTCTGTTGGGGGGGGGGGGGGGGGGTAGATGTAAAATCAACATTACCACCATAAGTGGAGA GTTTGTTTCTTCATTTAGAAATTAGAATCAGTGACAAGTGGTGATAATGGCCACAGCCCTACCACAACCCTCACCCTTAG ATTATCTTTATGTGTGTGAATAAAAAATGGACAGTTAATATTCTATAGCATGTGTGCATGGTTTCCTCCATAGGTATACT TCTTTCTTGTTCTTTTTTTTTCTATTGGTTTGAAATTAGTTGCACCACTTGAGAATGTATGTAAAAGTGAAATACTAATA TTCAGTAGTAGCATATGATAGGTCAACCTGAAGTTGAAAGTTGATGTTTGTGTGGCGGTTGGCCGAGGCATTTCTTGTAC CTAAATCTTTTTCTCATTAAAAGTTTCTTTATATACTAATTTCGTCAATAATTCTTCTCTGCTGATTTGGTTTATGTTAT GCTACTTCTCTCTGTTGGCTATTGTGATTGCCATATTTCAGCTAAGTGATCAAGAAGATCTGATAGTTTGGATGCGTACT GCTGCTCTCCCCAGCTTCCGAAAGTTGTATGGAAGAATTGAAGAGGATTTGGATGCAGATGATGTTATAGTCGTCCACCT AGAGAACAATTATAACACTTACAGTTTTGGTGGAAAGAAGAAGCTTGTTCTGTCGACAACAAGCTGGCTGGGAGGAAAAA ATGACTTCCTTGGAGTTGCCAATTTACTTGTTGGAAGCTTTTGTATATTGATCTCGATCATCTTCCTGTTGCTTCATGTG AAAAATCCTAGGTAATAACAGTGTCCATATTTGCCTAATTACTTTATGGTTATTTAGTGCACCTTGACCACTGTATCATG TAGTTGGCTGGAGGATGCTGAACACTGCTATTCTTGAGTTCCTGTAACACTTAAATATACTGCAGGATAGCCTTTCATTT TCTTTTTCCCCCCTTTTTTGTTGCTTTTCCTTTACTCTTATTAAGAGCTTCTATTTGAGTTTTAAGTTGATTTTCTGCTG AGTGAAATTCTTAATACGGACAATAAACAAGCAATTGTACATCATTGCAATAATCAAGGTTTTTTTAACTTCTCACAAAA AAAAAAAATGAAAAAAATGTGTTGATCATACTCATGAATAATTCCCATAGTGGTAGTTTGCATAGTAAACATGTTCTGAT CATTCTCCTATCCTGTCTTTTGAAATTGTTTTTCTCAGACAACTGTTGACTTATGCTTTCTACATGTTATTCTTCTTTTT TTTTTCTTTCTTTTTTTCTGAGGCAGACCTTATGGGGACACAACCTACTCATCTTGGAATAAGAAAAACACTGCTACCTG ATAAGGCAACTTGGTACACCAGTAATACTTTCTTGTGGAAAATGAGGACACATATTCTTGTTACAAAGGATATTGTATTT AATTGTAAATGGTAAAGCAGAGTAAACATCTCCTTTGGGTTTCATTCTAATGAAAGTAATCCATTATTAGTGAGATAGTA GTGATGAAAGTTTGTGTGGTTTATATGTGGCCATAAAATCAAAGCTGAAGGCCTGCTATTGTACTTAAAATAACACTATA TAGTCTTGTATTTTCAAGTGTAGTTTTACAGAGTAGAGTTAGTTAAAGGTTTATTAATAGTGGGAGCAGACTCTTGGCTT CTTTTTTTTTCCCTATCAAAAAAAAATCAGTTATGTTTTTCGTGATTGATTCTAGCACTTCTTTAGCTGTATTCTGTTGA AACAAATTATTTGGGAGAAATTGTCTTTTATACAGAGACCATCTCATTAATACTATGAGTGCATTAAGAAGAATAGCCAA TTTTTTTTTTTTGAAATATAGAATAGCCAATTAAATCAAGGGCTACTTATATAAAGTTA
CDS sequence (LotjaGi6g1v0210200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACTGACACCTCTGGAGCTCGGGAAATTGTGATAATGGATCTCGATGAAGAAAGTTCGACAACATCGGTTAGCAG GAGAGTGCCGGCAATTCCAGGTCGGCCGGCACAAAAGGGAGCTTTCTATCAGTTTACACAGCAGAACCTTCCAGCATGTA AACCTGTCCTTACACCTAGAGCAGTCATTGCTACGTTTCTATTGATGGGTTTCATTTTCATTCCTGTTGGACTTGTTACA CTTCGTGCTTCGTATAGTGTTGTTGAAATTGAGGACAGGTATGACATTGATTGTGTACCGGATCAATTTAAAAGTAATAA GGTCGCATATATCAAAGATGACTCAATCTCCAAAAACTGTTCACGATTCTTAAAGGTACCTAAGCCAATGAGAGCACCGA TTTATATCTATTATCAGCTTGATAACTATTACCAGAACCACCGACGGTATGTAAAAAGTAGAAGTGATCAGCAACTCTTA CATGGTCTTGGATACAATCACACCAGTTCTTGTAAACCTGTAGAGTCTTCTGATAATCTTCCAATTGTACCTTGTGGGTT GATAGCATGGAGTATGTTCAATGATACATATATGTTCAATCGTGGGCCAACAAAATTGAAGGTCAATAGGAAGAACATTG CGTGGAAGAGCGATCGCGATCACAAATTTGGAAAGCATGTTTACCCGTTTAATTTTCAGAATGGGACATTGATTGGGGGT GGAAAGTTGGATCAAAGTGTTCCTCTAAGTGATCAAGAAGATCTGATAGTTTGGATGCGTACTGCTGCTCTCCCCAGCTT CCGAAAGTTGTATGGAAGAATTGAAGAGGATTTGGATGCAGATGATGTTATAGTCGTCCACCTAGAGAACAATTATAACA CTTACAGTTTTGGTGGAAAGAAGAAGCTTGTTCTGTCGACAACAAGCTGGCTGGGAGGAAAAAATGACTTCCTTGGAGTT GCCAATTTACTTGTTGGAAGCTTTTGTATATTGATCTCGATCATCTTCCTGTTGCTTCATGTGAAAAATCCTAGACCTTA TGGGGACACAACCTACTCATCTTGGAATAAGAAAAACACTGCTACCTGA
Protein sequence (LotjaGi6g1v0210200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTDTSGAREIVIMDLDEESSTTSVSRRVPAIPGRPAQKGAFYQFTQQNLPACKPVLTPRAVIATFLLMGFIFIPVGLVT LRASYSVVEIEDRYDIDCVPDQFKSNKVAYIKDDSISKNCSRFLKVPKPMRAPIYIYYQLDNYYQNHRRYVKSRSDQQLL HGLGYNHTSSCKPVESSDNLPIVPCGLIAWSMFNDTYMFNRGPTKLKVNRKNIAWKSDRDHKFGKHVYPFNFQNGTLIGG GKLDQSVPLSDQEDLIVWMRTAALPSFRKLYGRIEEDLDADDVIVVHLENNYNTYSFGGKKKLVLSTTSWLGGKNDFLGV ANLLVGSFCILISIIFLLLHVKNPRPYGDTTYSSWNKKNTAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 60 | 60 | - | – | |
| PIRSF | 18 | 358 | 341 | 1.4E-131 | ||
| PANTHER | 20 | 361 | 342 | 5.7E-197 | ||
| PANTHER | 20 | 361 | 342 | 5.7E-197 | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 61 | 81 | 21 | - | – | |
| Pfam | 82 | 345 | 264 | 4.0E-84 | ||
| Phobius | 82 | 316 | 235 | - | – | |
| Phobius | 317 | 339 | 23 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 340 | 362 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0210200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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