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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0210800 |
| Transcript ID | LotjaGi6g1v0210800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein, putative; TAIR: AT1G29400.1 MEI2-like protein 5; Swiss-Prot: sp|Q8VWF5|AML5_ARATH Protein MEI2-like 5; TrEMBL-Plants: tr|A0A151TEN3|A0A151TEN3_CAJCA Meiosis protein mei2; Found in the gene: LotjaGi6g1v0210800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50823452..50828556) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAGAACGGTGATGCAATGAAGCAGTCTTTTGATCCTACATCCTGGGGTAATTCTTTCAATTCTTTTATTTTGTTCTG GTTATCAACTTACAATAATGAGTTATGATGTTGAAACAAATATAATCTTTTTATTGCTTATAGGTCCTTCCAGGATTCCA TCTATAAATGTACCTGGAAAACCAGGGCGTGGTCCATGGGGGGTTTTATCTGGATCTGATTCATACCATGCCTCATCTGA TGCCAGCCTATTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATGTATGTGATTGTTATATCTTAACAGCTCTGTTG TTTAGTGTACTTGATGTTTTGTAAAATGTCTTAACAGGTCTGTTTTGTCTCCTGCAGTGAACTTAAATGACACTGAAAAT AATTATCAATCTGTTGATGACATCTCATCCGGCTTTAAAAAGCTCCATCAAGATGTAGCGGTTAATGATTCCCTTGAAAA TGGTGATAATGATGCAATCGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTAATC TAAGTGATTTGCCTGGTTCCCTCGAGGACTTGGAAGAGTATGACTTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACT GATCCCCAGGAAACTCTCAGTGTCGGTATGTCAAATTTAAGCTTCTCTGATAGTTCTCTTGGCAATGGTTTGCCCAATTA TTCTATCCCTAATGGTGTGGGAATTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACCTTATTTGTTCGAA ATATTAACAGTAATGTTGAGGATTCGGAGCTAAAGGCCCTTTTTGAGGTGAGTTTTAGTTAGAGCTAGCTCAATCTAGAA GTTAGTATAAACGTTTGCTTTGATATATTAGTATTCTGTTGGTGGCCATAACTTATCATTGCCTCTTATGGACATTAGCA TATCTTTGTTGAAAAGAAATTCGTGTGAAACATAATGAATTGTTATTGTGTTTTGATATTTTTTATTTTCAGCAATATGG TGATATTAGAACCCTGTATACTGCATGTAAGCACCGGGGGTTTGTAATGATATCGTACTATGACATCCGTGCTGCTCGAA CAGCTATGCGCTCATTACAAAACAAGCCTCTACGGCGCAGGAAACTTGACATTCACTTTTCAATACCAAAGGTGTTTTTA CCAACTGAAAAGTTCACTATTGTGATCTATTCTTTTATTTTGAATTCCTGTGTTCTTATTTATTCTCTTGGCGTTCTTTT CTTCAACAATCCCAGGATAATCCATCTGACAAGGATGTCAACCAAGGAACCTTGGTAGTTTTCAACTTGGATCCATCTGT TTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGGTGATAATGTTATCCTTGTTTACTGTTT TGCATCCCTGCTTTTGCTCACATCCTGCACATGCATGAACATACGTCTGTTTATGTATGTGTTTATATGTGTTCAATTGT TTAAACTTAAGATTAATGATCAATATCTCTGCAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTATTGAATATT ATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGAAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCT AGTCGGCCTGGAGGAGCTCGTCGAAAGTGCGTACCCTTATAATTTAACTGTTGCTTTTGTTGATTGTCTTGTTATCTTTA TGATAATCATCTGTTCTGAGGGCTAATTTTGCGTTGTGTAAATACATGAAAATTGAAAAGACTGATGAGGCATGTAAGAC TTTTCAACTGTTGATAAAAATAGCACAAATAATGTTTTTTGACTTGTCTTTTTCTGGTACCTATTATCTAGTGAGATAGC TTAAACACTGTTGAAAGTATTTAAAATGATTATGATTGGCGTTGCATTCCTCTGAAATTAGTTTCACCAAATTAGCCATA AACTCAATGTGCTAAGTGATAGTAGAGAAACTCATTCAAAATGTTATTCAGGATGGAAAATTATCATCACTAACATGTGT AACTTCCTTATATTGGCCACCTTTGTGTTCTTATCATAAACCGATGCACAAACATATAATTGATCATATGTTGCACCTTT TAGTTTGATGACCCAACTAAATCAAGATCCTGACCAAGATGAAACTCGGAGTTTCCGGTACCCAGTGGGTTCACCAATAG CCAGCTCTCCACCAGGTTGGTTCTTTGAGATGCTAAATATCCCTTGTGCCGCGTCTTTAAGTAGCATAGCTTTTGTTTAA GGAGTTCATAATCAAGTTCCCTTTGCATTTATGTTCTTTCTGATGAAATTGAGTTAATAAAACCTTTGTCATAGGTAATT GGTTCAACAGTCCTGTTGAGCAGAATTCAATGCCAACTATCAATCATTCTCCTGGTTCGAGGATTATGAGCCCAACAGCA GGCAATCATTTACGAGGATTAGCTTCGATTTTGCAACCACAAGTATCGAACACTGTGAAGGCTCCAACTAAGGACATAGG AAGGAATGTTCATGGAGCTACTTTTCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCATGGAGCTTTGCCCA CTTTTGGTCCATCAACATCAAATGGATCTTCAATCGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAAGCCTC CACTCAGAGCAATCCAAACCAACAGCTTGGTCAAGACCATCCGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGC CTTCCCATTCTCAAGTCAGAATAGTTCATTTGTCAGTTCGTCCCAACCTCATCACCACCATCATGTTGGTTCTGCTCCAT CAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTCTTCCCGAGTCACCTGAAACTTCATTTGTGAGTAATGTTGGTTATGGA GGCATGAGTCTGGGGCACAATGATGGAAACTACTTAGTTAATGTGAGCGGGTCTGTTAATGCTGGCATTTCTATACCAAG AACTGTGTGTGACAGTGGTTCATCGAACTTCAGAATAAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGCAATGGTC CGTATCCAGGATTGTCACTTACTCCCATGGAGAGTTTGGCTGACCGTGCTAGGAGTAGATGGATAGAGAACAGTGGAAGC CAAGTTGACAGCAAGAAGCAGTTTCAGCTTGACTTGGATAAGATTAAATGCGGTGAAGATACAAGGACTACATTAATGAT AAAGAATATCCCAAATAAGTATGGCTAACTTTTAATAAAGCTGTTAGCTGTTTATTAACCTTTAATTTTACTGGATGCTG AGATGATATATTAATTGTTGATAACCTGCAGATATACCTCCAAAATGTTATTAGCTGCCATTGACGAAAACCACAAGGGT ACCTATGATTTCCTCTATCTGCCAATTGACTTTAAGGTAATGTTGTGCTTTTTTAACGAACTATTTGTTTTTCCCCTTGT GTTGCTTTTAAATCTTAGTTCCTCTGAACATGTTGAAGCTGATATTTTTTCCCCAATTGCAGAATAAATGCAATGTGGGT TATGCATTTATCAACATGCTGTCACCCTTGCTTATTATTCCATTCTATGAGGTTTGTATGGGAATATTTTGGCTAGGCAC CTATTTGCATATTTTTATCATTTTTCTGGATGAACTTGTTAAAATTAAAATTAACATAGCTGTTAATGATATCTTGGCTT TTATTTAAAAAATGTAACTAGAAAAGCCTAATGATTTCTTTTCCTTTGTTAAGTTGTAGATCCACTGATGTGCCTGATTT TGCAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTCGCATCTTTGGCATATGCTCGAATCCAAGGA AAGTCTGCCCTTGTGAACCACTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGTTGCCGCCCTATTCTGTTCCATTC AGAGGGTTCTGAAACTGGTGATCAGGTAATAATAGGATTTGGCTCCTCTAAAGTGACTCTAAAGTGAGAGTCACTTGAGA GGGTAAAGTAAGTCATCACAACCATTAATATTGATTCTCTACTGTGAAAAGTGAATAAAACAACTCAATCAATGGTAAAT ATGACCTACTTTACCTCACTTTAGAGGAGAGGAGCCGAACCCATAATAATATATATATGTCTCAAACTGTGATTGGAAAA CATTGTTTGATTTTTCTTCATTGATATTTGGATCTGTTATTTTTGTTATTTTCTCTCTTTTCCTTTGGATTTGTTGTCTC CTCAAATGTAACCATGACTGAGATGATCACTTATTAGTTAATTGTGCTGTTCTATTCTTTGTTTTCTACATCTAACAATA GCCCTAACTGCTGCAAATGTCTATATACTTTCCTGTAGTTCATACAAGAGCATCTACCTTCCATCTCCAACAATCTAAAT ATTCAGGCAGCTAGGCTGAGCGAGTTACATTCAAGTTTTACTCCTGGAAGCCCTCCAAAGGATGGTCCTCCTGTGAGTTT GGGTACAAATTAACATTATATCAGATGCAGAGTTTCCAAGACCAAATCAGTTGCTGTTGGGATCTCTGGTGCTGCATATA TTTAGGAAGGATAAGAGGATGTAGATTTTGTACCATAGTTACTCATGGAATTATTTTGCCAGCAAGCTTCAGAAGCTTTG AAGCATTTTGATTGATTTGCTGCAGAGGTAGGTAGCTAATCTGATGATGTACACAAGGTGGGAGGAGCACAGGCTGAAGA GATGAGCAAATAGAGCCTCCTTCTAGGGAGGCTTTCTCTCCAGTATTGCTCATTTTTGTTGCTTTTTGGTGGATTGTCAT TTTGAGGTTTATGAAAATGTTAATAGGGTAAGAGTTAAGTTAGGTTTGAGATTGACAGTTAAGTTAACATTGGGTGCAAA ATTGTATAGAGAGGAAAAAAAAAGAGACTTCTTTATTTCTTCCTCTAATGTATCAGTACTGTTGACAATGACGATGATGG ACAAGTTGTTCTTTCTGTTTCCCTACAAGACAAAATTGTTTTGGCTTTGAGCTAGCTTTACAAGT
CDS sequence (LotjaGi6g1v0210800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAGTCTTTTGATCCTACATCCTGGGGTCCTTCCAGGATTCCATCTATAAATGTACCTGGAAAACCAGGGCGTGG TCCATGGGGGGTTTTATCTGGATCTGATTCATACCATGCCTCATCTGATGCCAGCCTATTTTCTAGCTCATTACCTGTTC TTCCACATGAAAAATTGAACTTAAATGACACTGAAAATAATTATCAATCTGTTGATGACATCTCATCCGGCTTTAAAAAG CTCCATCAAGATGTAGCGGTTAATGATTCCCTTGAAAATGGTGATAATGATGCAATCGGAACCATGCTTCCTGATGATGA GGAGGAGCTTTTAGCTGGCATAATGGATGATTTTAATCTAAGTGATTTGCCTGGTTCCCTCGAGGACTTGGAAGAGTATG ACTTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCCCAGGAAACTCTCAGTGTCGGTATGTCAAATTTAAGC TTCTCTGATAGTTCTCTTGGCAATGGTTTGCCCAATTATTCTATCCCTAATGGTGTGGGAATTGTTGCTGGAGAACATCC ATATGGAGAGCATCCTTCTCGAACCTTATTTGTTCGAAATATTAACAGTAATGTTGAGGATTCGGAGCTAAAGGCCCTTT TTGAGCAATATGGTGATATTAGAACCCTGTATACTGCATGTAAGCACCGGGGGTTTGTAATGATATCGTACTATGACATC CGTGCTGCTCGAACAGCTATGCGCTCATTACAAAACAAGCCTCTACGGCGCAGGAAACTTGACATTCACTTTTCAATACC AAAGGATAATCCATCTGACAAGGATGTCAACCAAGGAACCTTGGTAGTTTTCAACTTGGATCCATCTGTTTCAAATGAAG ACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTATT GAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGAAGTGATATAGCTGGTAAACGCATAAAGCT TGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGACCCAACTAAATCAAGATCCTGACCAAGATGAAACTCGGA GTTTCCGGTACCCAGTGGGTTCACCAATAGCCAGCTCTCCACCAGGTAATTGGTTCAACAGTCCTGTTGAGCAGAATTCA ATGCCAACTATCAATCATTCTCCTGGTTCGAGGATTATGAGCCCAACAGCAGGCAATCATTTACGAGGATTAGCTTCGAT TTTGCAACCACAAGTATCGAACACTGTGAAGGCTCCAACTAAGGACATAGGAAGGAATGTTCATGGAGCTACTTTTCAGT CGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCATGGAGCTTTGCCCACTTTTGGTCCATCAACATCAAATGGATCT TCAATCGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAAGCCTCCACTCAGAGCAATCCAAACCAACAGCTTG GTCAAGACCATCCGTGGGGCATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATTCTCAAGTCAGAATAGTTCAT TTGTCAGTTCGTCCCAACCTCATCACCACCATCATGTTGGTTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGT TTTCTTCCCGAGTCACCTGAAACTTCATTTGTGAGTAATGTTGGTTATGGAGGCATGAGTCTGGGGCACAATGATGGAAA CTACTTAGTTAATGTGAGCGGGTCTGTTAATGCTGGCATTTCTATACCAAGAACTGTGTGTGACAGTGGTTCATCGAACT TCAGAATAAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGCAATGGTCCGTATCCAGGATTGTCACTTACTCCCATG GAGAGTTTGGCTGACCGTGCTAGGAGTAGATGGATAGAGAACAGTGGAAGCCAAGTTGACAGCAAGAAGCAGTTTCAGCT TGACTTGGATAAGATTAAATGCGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAATAAATATACCTCCA AAATGTTATTAGCTGCCATTGACGAAAACCACAAGGGTACCTATGATTTCCTCTATCTGCCAATTGACTTTAAGAATAAA TGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTTGCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAA ATGGGAGAAGTTTAATAGTGAAAAAGTCGCATCTTTGGCATATGCTCGAATCCAAGGAAAGTCTGCCCTTGTGAACCACT TCCAAAATTCAAGTTTGATGAATGAAGATAAGCGTTGCCGCCCTATTCTGTTCCATTCAGAGGGTTCTGAAACTGGTGAT CAGGTAATAATAGGATTTGGCTCCTCTAAAGTGACTCTAAAGTGA
Protein sequence (LotjaGi6g1v0210800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQSFDPTSWGPSRIPSINVPGKPGRGPWGVLSGSDSYHASSDASLFSSSLPVLPHEKLNLNDTENNYQSVDDISSGFKK LHQDVAVNDSLENGDNDAIGTMLPDDEEELLAGIMDDFNLSDLPGSLEDLEEYDFFGSGGGMELETDPQETLSVGMSNLS FSDSSLGNGLPNYSIPNGVGIVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDIRTLYTACKHRGFVMISYYDI RAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI EYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMTQLNQDPDQDETRSFRYPVGSPIASSPPGNWFNSPVEQNS MPTINHSPGSRIMSPTAGNHLRGLASILQPQVSNTVKAPTKDIGRNVHGATFQSHSLPEPKFSQYHGALPTFGPSTSNGS SIETLSGPQFLWGSPSLHSEQSKPTAWSRPSVGHPFTSNGKSHAFPFSSQNSSFVSSSQPHHHHHVGSAPSGLPFERHFG FLPESPETSFVSNVGYGGMSLGHNDGNYLVNVSGSVNAGISIPRTVCDSGSSNFRIRSSPRLSPVFLGNGPYPGLSLTPM ESLADRARSRWIENSGSQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNK CNVGYAFINMLSPLLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVNHFQNSSLMNEDKRCRPILFHSEGSETGD QVIIGFGSSKVTLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Phobius | 1 | 722 | 722 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 25 | 809 | 785 | 0.0 | – | |
| PANTHER | 25 | 809 | 785 | 0.0 | – | |
| Gene3D | 188 | 274 | 87 | 1.8E-17 | ||
| SUPERFAMILY | 191 | 353 | 163 | 1.42E-32 | ||
| CDD | 193 | 269 | 77 | 3.69789E-51 | ||
| ProSiteProfiles | 194 | 267 | 74 | 14.095 | ||
| SMART | 195 | 263 | 69 | 7.9E-12 | ||
| Pfam | 196 | 260 | 65 | 5.0E-11 | ||
| Gene3D | 275 | 371 | 97 | 2.2E-17 | ||
| CDD | 278 | 348 | 71 | 5.6473E-45 | – | |
| ProSiteProfiles | 279 | 352 | 74 | 14.658 | ||
| SMART | 280 | 348 | 69 | 3.2E-14 | ||
| Pfam | 281 | 346 | 66 | 4.7E-12 | ||
| MobiDBLite | 347 | 372 | 26 | - | – | |
| MobiDBLite | 493 | 544 | 52 | - | – | |
| MobiDBLite | 493 | 550 | 58 | - | – | |
| Pfam | 679 | 775 | 97 | 1.9E-54 | ||
| SUPERFAMILY | 681 | 765 | 85 | 1.03E-14 | ||
| SMART | 681 | 757 | 77 | 2.5 | ||
| CDD | 682 | 767 | 86 | 1.94229E-64 | ||
| Phobius | 723 | 740 | 18 | - | – | |
| Phobius | 741 | 814 | 74 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0210800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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