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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0212800 |
Transcript ID | LotjaGi6g1v0212800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | BTB/POZ domain-containing protein; TAIR: AT1G30440.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440; TrEMBL-Plants: tr|A2Q365|A2Q365_MEDTR BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3; Found in the gene: LotjaGi6g1v0212800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51060252..51065379) extracted from Lotus japonicus Gifu genome v1.2.
AATGGAAACTCAACTCAGTTTTTCTGAAAACCCAAGTCCGTTACCCTAACGCATGCACATGGCCTAGCTACTCACAAACC GACACTATCGTAGTAATAAACAAAAACCTTAATAAATACAAAGAACAGAACGTTTCCACTGTACTACTGTTTCTTCCAAA GTCAAATCGATTTTTTTAAGTGCTTCATTAGAGAGATTCTTAGCTCGAGAAACCAAGCAATGAGTATGTTTCAAGCCACG GACCCCACATGCATATGCCATTGCTGCCATTAATGATGATCATAACAACCCATTTTCTTAATGCTGCATTTTTTTTCTAT TAAACCATACAGTGAGTCATTTTTGTAGTTTTTCTCATCTGGGTATGAGTTGTTTTTGGCTCTTGTGTCTTGTTTAGGTA ATGGGTTGGTTTTGAATTTTGAAAGTTTAATTTTTGTTATGTGGGTTGTTGACCTAAACTAGGTGGATGGGATAAGGAAC CATTTGGGTTTGATTTTGTGGTGGTGGCTGCTATTGGAGTGGTTCTGGTTCTAGGGTTTTTTTTCTGGTGGGGGATTTGG CTCTTTTGGTTTGGTGGGTTGCTGGGAATTTTGATAAAGGTTTGGAAGGAGCTGCATTGTGAATCAATTTCAAGGCTGAA ATTTGAGGGGAATTGCTTCTTGAATTGTTAGTGTTGGAAGCTTCATTTGGTGCTGGTTAGGGATTTCAGCTTGATACAGT GTTTCAGAAGGGTTTTGGATCCGTTCTTGACTTGGTTTCTGTTATTGAGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTAT CTTTTTGGGATTTGACTAGATGGCTTGCGTGAAATTGGGTTCCAAAGCTGATGCGTTCCACCGTCAAGGGCAGGCCTGGT ATATAGCCTAATTTAACCCTTTTTGTGCTCTGTCAATTAGTTTTCTTCTCTATTACTTATTCTAAAATTGATGTTCTTTG TTGAAATGTTTGTGTCTCGTGAACTCTAGGATTAGGAAGAATATGTTTAGATACTTTTAAGTCATCGGTTTACTGAATGG TTGCTTGATATGCCTCATTGAGTGATAATTGGTGGTTTAGAAATTTGAACTCATGTTAATGTTTGGTAATGGGCTATGGT GCTAATAATTAATTTTGTGAAGGTCTTATTTGTCTTGCTTGGTCGATCCTTCTATGTCAAATCCGGGATTGGTTACTGGA GGTTTGGATGTAAAGTTTAATTTGTCAAATATCATGTATGCATTGGCATGGATGTGCCTCTATGCCACTTTTGAGACGGA GTCAAGGAAACCTTTTGCATGATAGGCATGAATCCTGTTAAATGACCTTGCAAAGTGTAATGAACTCCTTAGCGCTACTA CGATTTTGGTTGTTCTATGTTTCTTTTATAGCCTACGCTTTGATAAGTCAGATTGGTGTTTGTTCAACTAGACAGTGAAG GATGGGATTTTTCTTTCTGTCTTGATTCCTAAATTAAGCCATTTAAATGAGACTATTCTTAGTACAGCCTGATTGGAAAT GCATTGTATCTAATGGAACTTCAATGAAATTTAGTCATTTTTACACAATGTATAATATTTTAATGTTTTGACTGCTGTTA TATCCATAGGTTCTGCACAACCGGGCTACCTAGTGATATAGTTGTTGAAGTTGGTGAGATGTCCTTCCATCTTCACAAGG TATATGATATCTATTATCTAGTTCTTTTAACATACTTTTACCACTTATAGTTAGTGCACTATACAGATAGTATTAGCTTA CTTAAATTTCTAGCTTTTTATAGAAGATCTGATTATCCATAAATTCCAAAGTTTACATGAAGATAGACATAACAGAGTTT ACATTAGTACCTTAGCAATATGTTGCTTTACCATGTTATAAAGTATGCTGTCAATTTCTGCGTTGTTCAAAATACTTGAT ATTGATTGATACTGGAATGTGGTTGCAGTTGGTAATGTTTCTTCGCAAAAAGATTACTTGATATTGCATTATTATTATAT TATTGTGTCTTGGGGGATTATGCAAATGAAATGTGCAGAGGGACAGTATTTGGTTCTGGTTTTGGAAAAGCATGCCAATT TATAGTTCAATATTCCTTCATATATTGGCATGTTTGACTTTGCAGTTTATAGAAAATAGCTTTTCTACTAAGAAGCTCTG TCTCAGTATTTTGCGTATAAGCTTTTCTGAATATAAAATAAGCTGACCTGAGTACACACTTAATACAGTTTCCCTTGCTC TCTAAAAGTGGGGTTATGGAAAAACTGATTGCTGAAGCTTCTGAGTCAGAGGAAGAATGTGCCATCCACCTTCCTGATAT TCCTGGCGGGGCGAAAACATTTGAACTTGTGGCAAAATTCTGCTACGGTGTGAAACTTGAACTTACTGCGTCCAATGTTG TGCACCTCTGGTGTGCTGCTGAGCACCTTGAAATGACTGAGGAAAATGGTGAAGGTAATCTAATTTCACAGGCCGAAACC TTCTTCAGTCAGGTGGTTCTCCGAAGTTGGAAAGACTCTCTGAGGTCACTTCAAACCTGTGATGATGTTCTGCCTGATGC GGAAAAGCTCCACATTGTGAAAAGGTGCATTGAATCACTTGCTGCAAAGGCATCTACTGACCCAAATTTATTCGGGTGGC CAGTACTGGAACGTGGTGGGCCTTTGCAGAGCCCTGGCGGAAGTGTCTTGTGGAACGGAATAAGTACTGGGGCAAGACCA AAGAATTCAAGTGCAGATTGGTGGTATGAGGATGTAACAAATTTGAGTTTACCTATTTATAAGAGGTTGATAGCTGTTAT GGAATCTCGAGGAATTCGGCAGGAGATCATTGCTGGTTCTCTTGCTTTCTATGCTAAAATGTATCTACCAGGGTTGAATA GACGCCAGGTTTCTGGTGAGTCCAGCACCCGTCTGACACAGATGGCTTTGGGGTCTCCACCGTGTGAAGAAGACCAGAAG ATTCTACTGGAAGAGATTAACCGGTTACTCCCATTGCAGAAGGGCCTGGTCCAAACAAAGTTCCTCTTTGGTCTACTTCG AACAGCCATGATTCTACGAGTGGACTCCTCTTGCATATCAGATTTGGAGAAACGTATTGGGATGCAGCTTGATCAAGCTA ATCTGGAAGATCTCTTGATGCCAACTTTCTCATACTCAATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTT GAGAATTTCCTTGCCATGGATCAGGCTACAGGTGCTGCCTCTCCATGCTCAATTGATGATGGCGAGTTGATGGGATCGCC TTCATTAACGCCAATCACCATGGTAGCCAAGCTGATCGATGGTTACCTGGCAGAAGTTGCCCCAGATGTTAACTTAAAAC TTCCCAAGTTTCATGCCCTTGCTGCTGCTGTTCCTGAGTATGCCAGGCCTTTAGATGATGGTTTATATCGCGCTATAGAT ATTTTTTTGAAGGTACGTATCTAGAGCAAGTTATATTATAATATGTTTTGGATGTGGTATATAGAGCCCATTTGGGTACG GATTTATTGGAGTTTATCTACTACAAAAAACACTAGATAAGCTCCAATAAGTGCTCTTTGGTTTGCATTCAAATGGTTCC TAAGCTAAATTTGTAGCACTATATATGTTTGTCTAATACTATTGTCAATTCTGCTTTATTTAATTATTGTCCTTGATTTG AGTGAGAATACCTTACCCACACATATTTATCTATAATCAAGGTATCATATCGCGGTCATCTTTGTAGTCAGTTTTCAAAT CATATTCTGTTCCTTTTATTTCACATCATTTAGCACTAGTTAGCATCATTTTCTGGTAGTCATTTATAGCATGTTTGGAT TAGTTTCTCTTTCATTAGAATCAATTATGAAACTTAGAAGCTTCTCCCCATAATTGATTTTGGCTTAAGAGTCTATTGTA TAAGGGTTTCCAAACATGCACGAGGGCTTAAGAACATATTTTGCCAATTGTGAACTTCGAACTACTTTGGACTGATTCAC TGTTTCTGTCTGTCACACAAAACTGCAGTCTCACCCGTGGTTAGTGGAGTCTGAGAGAGAGCAACTGTGCAGGCTGATGG ACTGCCAGAAGCTCTCACTAGAAGCATGCACGCATGCTGCGCAGAACGAGAGGCTACCCATTAGAATAATAGTTCAAGTT CTATTCTTCGAGCAGCTCCAGCTCCGGACTTCAATCGCTGGTTGCTTCCTGGTTTCAGATAATCTCGATGGATCGAGACA GCTAAGAAGTGGTTTTGTCGGGTCCAACGAGGGTGGCGGCGGCTGGGCGTCCGCGGTGAAGGAAAATCAGGTTTTGAAAG TGGGAATGGATAACATGAGGATGAGGGTGTCAGAGCTTGAGAAAGAGTGCTCAACCATGAGGCAGGAGATTGAGAAACTG GGTCGTTCAACAAAGGGATCATCATCGAGCACTTGGGGAGCTGTGTCCAAGAAGCTCGGGTTTAAGATGAAGTCTCAGAT GTGCAGTGCTCAAGAAGGATCCGTTAGCAACCAGAACAATGGAAGTAATAAGGTTGTGAAGTTGAAGGAGAGACAAGTTA AGCACCAGAGAAGTTCTTCCATTAGTGATAAAGCTTCACTCTCTTCAATTGTTCTTTCTTAGTGTCTGCATTTTCATTTA TTTACTGAAGTTATTTTTTTCTTTCTTATTTCTCTTATGTTACTATGTCATATTGGTTAAACAGTTTCTTTGCCTCTGCA TGTCAAGAAAGTGTAGATGGAAACAAAGGTCCTCTGTAGTTGCAAGTGTAAACCTTAGCTTTAGTTTCTTCTTCTCTTCC CACTGCTTGTATGCACATTACACTTCCTCCTGCTTATTCAAAATATTCATATGTTTGAAATTTTAAAAGGGTATGCTCAT TTCTTTTCTTCAGTCCTTGAATCACATACAAAAAATTCAATGGGTGAGATCTAATGAACTTTATGAATATTTTATAATTC CACTATTTTTTGTTGTTTTCTTAAAACCAGCTATTGCATTCCACTTTATTTTCTTACACTTTATCTCCTAAAGCACAGAG TAGCCAAATTACAATTATAATAATCTTTATAATAGAAGGCACATTCTTCCACCACTTCCTTATTCATAATTTATTGTTTG TGTTTTAT
CDS sequence (LotjaGi6g1v0212800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTGCGTGAAATTGGGTTCCAAAGCTGATGCGTTCCACCGTCAAGGGCAGGCCTGGTTCTGCACAACCGGGCTACC TAGTGATATAGTTGTTGAAGTTGGTGAGATGTCCTTCCATCTTCACAAGTTTCCCTTGCTCTCTAAAAGTGGGGTTATGG AAAAACTGATTGCTGAAGCTTCTGAGTCAGAGGAAGAATGTGCCATCCACCTTCCTGATATTCCTGGCGGGGCGAAAACA TTTGAACTTGTGGCAAAATTCTGCTACGGTGTGAAACTTGAACTTACTGCGTCCAATGTTGTGCACCTCTGGTGTGCTGC TGAGCACCTTGAAATGACTGAGGAAAATGGTGAAGGTAATCTAATTTCACAGGCCGAAACCTTCTTCAGTCAGGTGGTTC TCCGAAGTTGGAAAGACTCTCTGAGGTCACTTCAAACCTGTGATGATGTTCTGCCTGATGCGGAAAAGCTCCACATTGTG AAAAGGTGCATTGAATCACTTGCTGCAAAGGCATCTACTGACCCAAATTTATTCGGGTGGCCAGTACTGGAACGTGGTGG GCCTTTGCAGAGCCCTGGCGGAAGTGTCTTGTGGAACGGAATAAGTACTGGGGCAAGACCAAAGAATTCAAGTGCAGATT GGTGGTATGAGGATGTAACAAATTTGAGTTTACCTATTTATAAGAGGTTGATAGCTGTTATGGAATCTCGAGGAATTCGG CAGGAGATCATTGCTGGTTCTCTTGCTTTCTATGCTAAAATGTATCTACCAGGGTTGAATAGACGCCAGGTTTCTGGTGA GTCCAGCACCCGTCTGACACAGATGGCTTTGGGGTCTCCACCGTGTGAAGAAGACCAGAAGATTCTACTGGAAGAGATTA ACCGGTTACTCCCATTGCAGAAGGGCCTGGTCCAAACAAAGTTCCTCTTTGGTCTACTTCGAACAGCCATGATTCTACGA GTGGACTCCTCTTGCATATCAGATTTGGAGAAACGTATTGGGATGCAGCTTGATCAAGCTAATCTGGAAGATCTCTTGAT GCCAACTTTCTCATACTCAATGGAGACACTTTACAATGTTGACTGTGTGCAAAGAATTCTTGAGAATTTCCTTGCCATGG ATCAGGCTACAGGTGCTGCCTCTCCATGCTCAATTGATGATGGCGAGTTGATGGGATCGCCTTCATTAACGCCAATCACC ATGGTAGCCAAGCTGATCGATGGTTACCTGGCAGAAGTTGCCCCAGATGTTAACTTAAAACTTCCCAAGTTTCATGCCCT TGCTGCTGCTGTTCCTGAGTATGCCAGGCCTTTAGATGATGGTTTATATCGCGCTATAGATATTTTTTTGAAGTCTCACC CGTGGTTAGTGGAGTCTGAGAGAGAGCAACTGTGCAGGCTGATGGACTGCCAGAAGCTCTCACTAGAAGCATGCACGCAT GCTGCGCAGAACGAGAGGCTACCCATTAGAATAATAGTTCAAGTTCTATTCTTCGAGCAGCTCCAGCTCCGGACTTCAAT CGCTGGTTGCTTCCTGGTTTCAGATAATCTCGATGGATCGAGACAGCTAAGAAGTGGTTTTGTCGGGTCCAACGAGGGTG GCGGCGGCTGGGCGTCCGCGGTGAAGGAAAATCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTGTCAGAG CTTGAGAAAGAGTGCTCAACCATGAGGCAGGAGATTGAGAAACTGGGTCGTTCAACAAAGGGATCATCATCGAGCACTTG GGGAGCTGTGTCCAAGAAGCTCGGGTTTAAGATGAAGTCTCAGATGTGCAGTGCTCAAGAAGGATCCGTTAGCAACCAGA ACAATGGAAGTAATAAGGTTGTGAAGTTGAAGGAGAGACAAGTTAAGCACCAGAGAAGTTCTTCCATTAGTGATAAAGCT TCACTCTCTTCAATTGTTCTTTCTTAG
Protein sequence (LotjaGi6g1v0212800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MACVKLGSKADAFHRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSKSGVMEKLIAEASESEEECAIHLPDIPGGAKT FELVAKFCYGVKLELTASNVVHLWCAAEHLEMTEENGEGNLISQAETFFSQVVLRSWKDSLRSLQTCDDVLPDAEKLHIV KRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSADWWYEDVTNLSLPIYKRLIAVMESRGIR QEIIAGSLAFYAKMYLPGLNRRQVSGESSTRLTQMALGSPPCEEDQKILLEEINRLLPLQKGLVQTKFLFGLLRTAMILR VDSSCISDLEKRIGMQLDQANLEDLLMPTFSYSMETLYNVDCVQRILENFLAMDQATGAASPCSIDDGELMGSPSLTPIT MVAKLIDGYLAEVAPDVNLKLPKFHALAAAVPEYARPLDDGLYRAIDIFLKSHPWLVESEREQLCRLMDCQKLSLEACTH AAQNERLPIRIIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGFVGSNEGGGGWASAVKENQVLKVGMDNMRMRVSE LEKECSTMRQEIEKLGRSTKGSSSSTWGAVSKKLGFKMKSQMCSAQEGSVSNQNNGSNKVVKLKERQVKHQRSSSISDKA SLSSIVLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 634 | 634 | 0.0 | ||
PANTHER | 1 | 634 | 634 | 0.0 | – | |
SUPERFAMILY | 16 | 114 | 99 | 4.55E-18 | ||
CDD | 19 | 122 | 104 | 4.27282E-45 | – | |
Gene3D | 20 | 173 | 154 | 7.4E-13 | – | |
Pfam | 27 | 113 | 87 | 2.8E-8 | ||
ProSiteProfiles | 28 | 97 | 70 | 11.647 | ||
Pfam | 213 | 478 | 266 | 2.3E-94 | ||
ProSiteProfiles | 213 | 502 | 290 | 92.343 | ||
Coils | 544 | 578 | 35 | - | – | |
MobiDBLite | 605 | 621 | 17 | - | – | |
MobiDBLite | 605 | 648 | 44 | - | – | |
MobiDBLite | 634 | 648 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0212800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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