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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0213700 |
| Transcript ID | LotjaGi6g1v0213700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2-like 2; TAIR: AT5G44560.1 SNF7 family protein; Swiss-Prot: sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2; TrEMBL-Plants: tr|I3T952|I3T952_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51232667..51237966) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTATGTGGGTCACCCCAACCTATTAAATATAGGTTGAATCGAGACTTTCAACCCAAATACTAAAAGTTGGTCAATTT CCGAAACGGGATCTGCCTTTTGGTAAAATAAAAATAAAAACGGGTAACGGCTACTTCGAGCATGACCTACGTGGATCCCC ACCTAGCAGCACGCTCCACAAGGCATCTTCTCCTTTTCTTCTCAGCAAACAACATCAAACACTTCACACTCTGTGAGTCA CTGTTAATCTCTCTTCCTGCTTCGTTCGTCAATTAGGGTTTTCCAGATCAACACCGACAACATGAACTTGAACATCTTCA AGAAGAAAACCTCACCCAAAGGTAAAACCCTTATTTCGTTTTCCCACTAAATCTTACTCTCGTTGGCGAAATTGGCAATT ATTTGGGTTGGATGAAAATGGGAATGTGTTTGGGCAATGGTATTCATTTACGTTTGTTTGTTTGTTTTTCCTTTGACAGA AGCTCTGCGGAGTAGTAAGAGAGAAATGGCTGTTGCAACAAGAGGTAATTGATTCAATGGAAGCTGATTTAGAAGTTCTA GTATTGATTTATGTCTATTTGTATAACTAGTGAATGTACTTTGCTGCCCATGTTAAATTGTTTTCATTTGATGTGAGTTG CTTGAATGGAGAGAGCTTTAGAGTATTTGTTTAACTAGTTGAATGTACTTTAGCCTTTAGAGTATTTTTTCTGATAAAAG ATGAATTACCTTGCTTGAATAAATGGTAATTCATGATCTTTGTTTTTCACTACTTTGTTGAATCTTCTCATGTTTTCAAA TAGCGGCATTAATAGCGGCTAACGCCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCACTATAG TGCGCTATTCCTGCTATTCGCTGCCAAATAGTGGCTGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCACAATCGCGA TTTGACAACACTTCTCATTCCCTTTTCCTACCCCAACATGCCTGGCAATCCATTGATTGCAGTTGTTTGAGAGGCCTCAT ATGAAATTTTCAGCTGAAAATGTTTAGGCTGATCTCATTGTTTGAGTCAAGAGTTACCCGATTTCCAAAAAACATTTGTG TTTCTTAATATTATATATACCCTTGCTCTAACTGTTCAGTGTTTATTCCAATGGTTCCTTGTCATCTGGAAAGATATAAT CTAATTGTCTATTCTATATGTTGCTGTCTGAATTAGCAACACTTCACATTTGATATCATTTGTTATGTTCACTCTGTTGA TCTTTCTTATTTGTGGATGGAAATTATAAGGCATTCATAGTAATCAGCAGTGCTTCACATTCGGCATCACTATTTTGTTT TACTACTGTATCACTTCTGTTAACATTTGTTTCCTTTTTCTTTCATTCACTCTTTCTTTCCTGTAGGAATTGAAAAGGAG ATAGCATCACTTCAGATGGAGGTACATAATGCTGACTGATGAGACCTTTCTTAGCAATTTTTTTATATTTTTCGGACATA TTTTTTAGTGCTAATGCTTCGCTCCCTTGTCAACTGCAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAAC CGGAAATGAGGTAAGTATGTTTGTAATTTCTCATCCATTTCCTTATTGTTAATGAGCCCTAAAACATATGGTTTAGCATG TACTGTATGCATAGTTATTGACAATGTGACATTGATAACAATCTTTAGTTAGATGTATATCTGGTGCTCTCGTCTCACTT GGGTTATGAGGTTTAATGAAGTTCAACTACCTCACATTTGGCCTAGAACCTGTCCATATAAAGATTTAAGTAGTCAAAAT TGGGATTTTGCCTTTAAAATCGGGAAGGAGTTGAAAATCTCGAGTCGATAGACTTTCATTGTCACCGTCGGTAGATAGTC AAGGCTGATGATTTGATCCCAATAATTCAGGGATCTCGACATTGTCTCTCTTATTATACATGTGTACAAAAGATCGTTGT AAATATAAAATAAGTACTTAGTTTCAATTTCAAATGGATGTGATTATAATATCCATCCTTTTATTTTCCGGTGGGGACTG GAGAGAGTTGGAATATTTTTATTATAGTGAAGCACTATTTTTAAACCTGCTCAAATGTGAAACCAACTGCTGGTGTGTAT GAACTGGTTCGGAATGCACGATAATAGCTATATAGCAATGCTGAATAAGGATGTGTCTGGTTACAGGCTGCCACTAGAAT ATTGGCTCGTCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCTCAGATCAGGGGTGTTGCAA CTCACACACAGGTGGAGAAAAATACTCTGTTTTTTGAGATGATGGCTGGATTTTCAATTTTCCTAATTCCCAAATTTCTT TTGCAGGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGGT ATGTTATCCAGAGTCATTCTGCTTTGTATTATTCAAAGACCAAAGTGACGTAATGCCATTGTTTTTGGTTTTCTGGTAGT TAGTAATACGAAAGGTATTTGAACTCTTGATTCTGTCATTGTCAAGGAAGAAAATAGAGAATATGTCCTATATGTTAAAA GTAACTTAGCTTTTACTGGATATGTTGACAGAAGGCTATAATAATTCTTTTATTTCCATCCATCATTGATAGTTTAATCA CGAAATTTCTGATGTCACTGAATCAGAATTTCATAATATGTGATAGATGTTTTGTGACATTGTTAGATTTGTGAAGAATA TTGTGCTTTTGACTACAATGGTACAGTAATCATTACCTTACTTTTCTTCTCAGCAAATGGCACCAGCAAAGCAGGCGAAG GTGATCCAAGAATTCCAAAAGCAGTCAGCACAAATGGACATGACGGTAATTTATCCTTTTGCCTATATCTCTAATATGTT CTCATGCAAGTTTCCTGCATCAACGGTAGGCTAAATACATTAGACTCTGCACAATCTGCCAATATTCTTAGACCTTGTTA GAGACAAGGCCAGTGCTAGTCTTTGCACACTGAAAATTGAATACGGACTTATTTTTGGTTTTCCACTTCAGCAGAAAAAT ACTGTTGATTTGATTTTTTAGTCTAGTGCTTTGAGTGCTTTCAGTGGAGTTGGGAGCCTGCGTGAAAGCATGCTTGGTGC TTAATGGATGCATTTAAGTAACAATACATTCAAGTAACAATAATAATAATAAATTTTAAGGAACAACATTAAACTAACTA GAATAAATTATTTTGATTATCAAATAACAATATATTCAAACTCAAGTAAAGAACTGATCAAACTTTCAAAAAAAAAAAAA AAGAACTGATCAAATGAAGAAAAGTAACTTAACAGAGAAAGAGAGAATATTTTATGTTAGAGATATGCTATGGCCTATGC TAACCATGAAGATGAGGACTAAGGGTTTATTTTAATTTGTTGGACTGTCATTAAGCTAGCATTTGTCAGCTGGAAACAGA AAGAGAAACAGAAACCTGTCGTTAACAATGAGTAGATGAAGTGGAACGTGGGAGTTTGTGTACTGGAAAAGGTTAAATTA GAAACAGTGTAGAAAAAAAATTATACAAGAAGGATATACCATAGAAGGTAGAACCGTAGAATTGAGATGGGAGTCAGAAC ATAGTTGCAGTGATGCCTTTAAATGGCCGAATAATAGAATCAACAAAAAGCCAAGTTTCCAGGAAACGTACCTGCTTCAT GTTTCGACAAGTTTGTGTTGCTATGAATGGTTGAGTTGCCAAGTTTTCTAAGGAATCTACTCTTTGAAAACAGTCTAGTT TGTTTTGGTTTTTCATTTGTTATAATATCATCTATGGCAAGCAGCTGTTGTGCCGACCTGATAGCCACAGTATTCAAGGC TGGCTCCAGCCATATCATTTGATAACATTTTCTTTCGCTCGAGAAACTTATAATGTTATCTTAAATGCAGATTGAGATGA TGTCAGAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTGAGAATA TAAATAAATGACCAACATAATTGTATAGTTTGATAGTAGAAGTGAAATTTTCCTTCAAAATATCTAACTTTTATTTATTC ATGACAGGTTCTTGACGAGATTGGAGTGGATATTGCATCCCAGGTTGGTTTTGAACCCTATACGAATCTGTTAGACATAC AATATGAAAATCATTCATATGCTTTCTCTAGAGTTCGACTTTGCCACCTTATTTTAATAATAAGTTGAATTTCAGCACAC CAAAGGTTCATTGTCCACACTTAAATCCATGTTCCTTTAAGGGCTTAAATTTTTTAGATAGTTGTTTGATGGTACAAGCG TTTGTCTTTGCACTTATTCTTTTCTATAATCACCTTTCTGAATGGTGGACCTGATGCTGGTCTTTTCTGATGATAGTTAT CTTCTGCTCCGAAAGGACGGATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCAAGGTATACTTCAATCTTATTCGTGCAT AATGCTGTTCAAATTTACATAAAATTTATATACTTAATCAAATATACACTTCTAATTAATACGTACAAGCTGTATAATAA TTTTAGTAATATAAAGGAAAGTAAATATACAAGGATGACTGTATGAGTAGTGATATATTTATAAATAAAATTATGTACAT ATACAAAATTTCTGTTTGGAATTTGGATTGGATTGTATTGATTTTCAAATCAAATATGATCCAATCCAATAAGAAATTTT GGATTTCTTTTCCTGTTTTGGGTTTGTTTTCTTGGATGGAATCAATTCATGAACATTTTAAGGATATTCTTATTGCATAG CTACTCTTGATCTCATTGAATCCTATGACATTTTAAGTGACAAAAAATTTCTTATCGTGCATGCAGACCAGCAGAATCCA ATGATGTGGAAGATCTTGAAAAGAGACTGGCTTCTCTTCGGAGGATATGAAGATCAGCTACAGCTGCTGATAGATATGTT TCATATTGTACAAATCATGATATATATGCTATATAGCAATATCGACACTTTATTAATGGCGCCTGGTATTATTACTGATT TTCTACTGATGTGTTTTAGATATGAATAATTCTAGTTTGTTGGACTGGAATGTATCACTAGCAGAGACATCTATAAATTG TTTAGTCAGAAGTTAGTCCATAAATCTATTTGGTGAAGTACCAGTTACTAGACTTTCTTATTTTAACTACGCCAATTGCA TTGAGCTCTCTTTTGAGTTT
CDS sequence (LotjaGi6g1v0213700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTGAACATCTTCAAGAAGAAAACCTCACCCAAAGAAGCTCTGCGGAGTAGTAAGAGAGAAATGGCTGTTGCAAC AAGAGGAATTGAAAAGGAGATAGCATCACTTCAGATGGAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAA CCGGAAATGAGGCTGCCACTAGAATATTGGCTCGTCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGT CGTGCTCAGATCAGGGGTGTTGCAACTCACACACAGGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGC CACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCAGCAAAGCAGGCGAAGGTGATCCAAGAATTCCAAAAGCAGT CAGCACAAATGGACATGACGATTGAGATGATGTCAGAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAA ACAGAAGAGCTCACTAACCAGGTTCTTGACGAGATTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGACG GATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCAAGACCAGCAGAATCCAATGATGTGGAAGATCTTGAAAAGAGACTGG CTTCTCTTCGGAGGATATGA
Protein sequence (LotjaGi6g1v0213700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLNIFKKKTSPKEALRSSKREMAVATRGIEKEIASLQMEERKLVAEIKRTAKTGNEAATRILARQLVRLRQQITNLQGS RAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQAKVIQEFQKQSAQMDMTIEMMSESIDETLDKDEAEEE TEELTNQVLDEIGVDIASQLSSAPKGRIGSRSAENVAPRPAESNDVEDLEKRLASLRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 219 | 217 | 5.2E-119 | – | |
| PANTHER | 3 | 219 | 217 | 5.2E-119 | – | |
| Pfam | 20 | 187 | 168 | 3.5E-35 | ||
| Coils | 147 | 167 | 21 | - | – | |
| MobiDBLite | 180 | 208 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi6g1v0213700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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