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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0213700 |
| Transcript ID | LotjaGi6g1v0213700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2-like 2; TAIR: AT5G44560.1 SNF7 family protein; Swiss-Prot: sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2; TrEMBL-Plants: tr|I3T952|I3T952_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51232672..51238251) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGGTCACCCCAACCTATTAAATATAGGTTGAATCGAGACTTTCAACCCAAATACTAAAAGTTGGTCAATTTCCGAA ACGGGATCTGCCTTTTGGTAAAATAAAAATAAAAACGGGTAACGGCTACTTCGAGCATGACCTACGTGGATCCCCACCTA GCAGCACGCTCCACAAGGCATCTTCTCCTTTTCTTCTCAGCAAACAACATCAAACACTTCACACTCTGTGAGTCACTGTT AATCTCTCTTCCTGCTTCGTTCGTCAATTAGGGTTTTCCAGATCAACACCGACAACATGAACTTGAACATCTTCAAGAAG AAAACCTCACCCAAAGGTAAAACCCTTATTTCGTTTTCCCACTAAATCTTACTCTCGTTGGCGAAATTGGCAATTATTTG GGTTGGATGAAAATGGGAATGTGTTTGGGCAATGGTATTCATTTACGTTTGTTTGTTTGTTTTTCCTTTGACAGAAGCTC TGCGGAGTAGTAAGAGAGAAATGGCTGTTGCAACAAGAGGTAATTGATTCAATGGAAGCTGATTTAGAAGTTCTAGTATT GATTTATGTCTATTTGTATAACTAGTGAATGTACTTTGCTGCCCATGTTAAATTGTTTTCATTTGATGTGAGTTGCTTGA ATGGAGAGAGCTTTAGAGTATTTGTTTAACTAGTTGAATGTACTTTAGCCTTTAGAGTATTTTTTCTGATAAAAGATGAA TTACCTTGCTTGAATAAATGGTAATTCATGATCTTTGTTTTTCACTACTTTGTTGAATCTTCTCATGTTTTCAAATAGCG GCATTAATAGCGGCTAACGCCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCACTATAGTGCGC TATTCCTGCTATTCGCTGCCAAATAGTGGCTGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCACAATCGCGATTTGA CAACACTTCTCATTCCCTTTTCCTACCCCAACATGCCTGGCAATCCATTGATTGCAGTTGTTTGAGAGGCCTCATATGAA ATTTTCAGCTGAAAATGTTTAGGCTGATCTCATTGTTTGAGTCAAGAGTTACCCGATTTCCAAAAAACATTTGTGTTTCT TAATATTATATATACCCTTGCTCTAACTGTTCAGTGTTTATTCCAATGGTTCCTTGTCATCTGGAAAGATATAATCTAAT TGTCTATTCTATATGTTGCTGTCTGAATTAGCAACACTTCACATTTGATATCATTTGTTATGTTCACTCTGTTGATCTTT CTTATTTGTGGATGGAAATTATAAGGCATTCATAGTAATCAGCAGTGCTTCACATTCGGCATCACTATTTTGTTTTACTA CTGTATCACTTCTGTTAACATTTGTTTCCTTTTTCTTTCATTCACTCTTTCTTTCCTGTAGGAATTGAAAAGGAGATAGC ATCACTTCAGATGGAGGTACATAATGCTGACTGATGAGACCTTTCTTAGCAATTTTTTTATATTTTTCGGACATATTTTT TAGTGCTAATGCTTCGCTCCCTTGTCAACTGCAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAACCGGAA ATGAGGTAAGTATGTTTGTAATTTCTCATCCATTTCCTTATTGTTAATGAGCCCTAAAACATATGGTTTAGCATGTACTG TATGCATAGTTATTGACAATGTGACATTGATAACAATCTTTAGTTAGATGTATATCTGGTGCTCTCGTCTCACTTGGGTT ATGAGGTTTAATGAAGTTCAACTACCTCACATTTGGCCTAGAACCTGTCCATATAAAGATTTAAGTAGTCAAAATTGGGA TTTTGCCTTTAAAATCGGGAAGGAGTTGAAAATCTCGAGTCGATAGACTTTCATTGTCACCGTCGGTAGATAGTCAAGGC TGATGATTTGATCCCAATAATTCAGGGATCTCGACATTGTCTCTCTTATTATACATGTGTACAAAAGATCGTTGTAAATA TAAAATAAGTACTTAGTTTCAATTTCAAATGGATGTGATTATAATATCCATCCTTTTATTTTCCGGTGGGGACTGGAGAG AGTTGGAATATTTTTATTATAGTGAAGCACTATTTTTAAACCTGCTCAAATGTGAAACCAACTGCTGGTGTGTATGAACT GGTTCGGAATGCACGATAATAGCTATATAGCAATGCTGAATAAGGATGTGTCTGGTTACAGGCTGCCACTAGAATATTGG CTCGTCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCTCAGATCAGGGGTGTTGCAACTCAC ACACAGGTGGAGAAAAATACTCTGTTTTTTGAGATGATGGCTGGATTTTCAATTTTCCTAATTCCCAAATTTCTTTTGCA GGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGGTATGTT ATCCAGAGTCATTCTGCTTTGTATTATTCAAAGACCAAAGTGACGTAATGCCATTGTTTTTGGTTTTCTGGTAGTTAGTA ATACGAAAGGTATTTGAACTCTTGATTCTGTCATTGTCAAGGAAGAAAATAGAGAATATGTCCTATATGTTAAAAGTAAC TTAGCTTTTACTGGATATGTTGACAGAAGGCTATAATAATTCTTTTATTTCCATCCATCATTGATAGTTTAATCACGAAA TTTCTGATGTCACTGAATCAGAATTTCATAATATGTGATAGATGTTTTGTGACATTGTTAGATTTGTGAAGAATATTGTG CTTTTGACTACAATGGTACAGTAATCATTACCTTACTTTTCTTCTCAGCAAATGGCACCAGCAAAGCAGGCGAAGGTGAT CCAAGAATTCCAAAAGCAGTCAGCACAAATGGACATGACGGTAATTTATCCTTTTGCCTATATCTCTAATATGTTCTCAT GCAAGTTTCCTGCATCAACGGTAGGCTAAATACATTAGACTCTGCACAATCTGCCAATATTCTTAGACCTTGTTAGAGAC AAGGCCAGTGCTAGTCTTTGCACACTGAAAATTGAATACGGACTTATTTTTGGTTTTCCACTTCAGCAGAAAAATACTGT TGATTTGATTTTTTAGTCTAGTGCTTTGAGTGCTTTCAGTGGAGTTGGGAGCCTGCGTGAAAGCATGCTTGGTGCTTAAT GGATGCATTTAAGTAACAATACATTCAAGTAACAATAATAATAATAAATTTTAAGGAACAACATTAAACTAACTAGAATA AATTATTTTGATTATCAAATAACAATATATTCAAACTCAAGTAAAGAACTGATCAAACTTTCAAAAAAAAAAAAAAAGAA CTGATCAAATGAAGAAAAGTAACTTAACAGAGAAAGAGAGAATATTTTATGTTAGAGATATGCTATGGCCTATGCTAACC ATGAAGATGAGGACTAAGGGTTTATTTTAATTTGTTGGACTGTCATTAAGCTAGCATTTGTCAGCTGGAAACAGAAAGAG AAACAGAAACCTGTCGTTAACAATGAGTAGATGAAGTGGAACGTGGGAGTTTGTGTACTGGAAAAGGTTAAATTAGAAAC AGTGTAGAAAAAAAATTATACAAGAAGGATATACCATAGAAGGTAGAACCGTAGAATTGAGATGGGAGTCAGAACATAGT TGCAGTGATGCCTTTAAATGGCCGAATAATAGAATCAACAAAAAGCCAAGTTTCCAGGAAACGTACCTGCTTCATGTTTC GACAAGTTTGTGTTGCTATGAATGGTTGAGTTGCCAAGTTTTCTAAGGAATCTACTCTTTGAAAACAGTCTAGTTTGTTT TGGTTTTTCATTTGTTATAATATCATCTATGGCAAGCAGCTGTTGTGCCGACCTGATAGCCACAGTATTCAAGGCTGGCT CCAGCCATATCATTTGATAACATTTTCTTTCGCTCGAGAAACTTATAATGTTATCTTAAATGCAGATTGAGATGATGTCA GAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTGAGAATATAAAT AAATGACCAACATAATTGTATAGTTTGATAGTAGAAGTGAAATTTTCCTTCAAAATATCTAACTTTTATTTATTCATGAC AGGTTCTTGACGAGATTGGAGTGGATATTGCATCCCAGGTTGGTTTTGAACCCTATACGAATCTGTTAGACATACAATAT GAAAATCATTCATATGCTTTCTCTAGAGTTCGACTTTGCCACCTTATTTTAATAATAAGTTGAATTTCAGCACACCAAAG GTTCATTGTCCACACTTAAATCCATGTTCCTTTAAGGGCTTAAATTTTTTAGATAGTTGTTTGATGGTACAAGCGTTTGT CTTTGCACTTATTCTTTTCTATAATCACCTTTCTGAATGGTGGACCTGATGCTGGTCTTTTCTGATGATAGTTATCTTCT GCTCCGAAAGGACGGATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCAAGGTATACTTCAATCTTATTCGTGCATAATGC TGTTCAAATTTACATAAAATTTATATACTTAATCAAATATACACTTCTAATTAATACGTACAAGCTGTATAATAATTTTA GTAATATAAAGGAAAGTAAATATACAAGGATGACTGTATGAGTAGTGATATATTTATAAATAAAATTATGTACATATACA AAATTTCTGTTTGGAATTTGGATTGGATTGTATTGATTTTCAAATCAAATATGATCCAATCCAATAAGAAATTTTGGATT TCTTTTCCTGTTTTGGGTTTGTTTTCTTGGATGGAATCAATTCATGAACATTTTAAGGATATTCTTATTGCATAGCTACT CTTGATCTCATTGAATCCTATGACATTTTAAGTGACAAAAAATTTCTTATCGTGCATGCAGACCAGCAGAATCCAATGAT GTGGAAGATCTTGAAAAGAGACTGGCTTCTCTTCGGAGGATATGAAGATCAGCTACAGCTGCTGATAGATATGTTTCATA TTGTACAAATCATGATATATATGCTATATAGCAATATCGACACTTTATTAATGGCGCCTGGTATTATTACTGATTTTCTA CTGATGTGTTTTAGATATGAATAATTCTAGTTTGTTGGACTGGAATGTATCACTAGCAGAGACATCTATAAATTGTTTAG TCAGAAGTTAGTCCATAAATCTATTTGGTGAAGTACCAGTTACTAGACTTTCTTATTTTAACTACGCCAATTGCATTGAG CTCTCTTTTGAGTTTTGAGTATTAATCTCAGGGGAGGTCAGTGCAAAGAAAAGGTATTATTACGATACAAAAGAGTGAGT ACATGAGGTATGAGAAGTTAAATTTGGGGCATAGTTTCATACAAGATACCGTGGCTGAATACCAACTCGAAAATGAAAGA TGGCATCAGCTATGTCTGTCAATTTGTATAGGGATTAAAATGATTCCTGGTTATCCATGATAGTTATCGACTTTGCATTC TTCACATGTGTACTTTTGAATTTTCCATCTTCTTTATTAAGGATCACTTAACGGACTTCC
CDS sequence (LotjaGi6g1v0213700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAACCGGAAATGAGGCTGCCACTAGAATATTGGCTCG TCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCTCAGATCAGGGGTGTTGCAACTCACACAC AGGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGCAAATG GCACCAGCAAAGCAGGCGAAGGTGATCCAAGAATTCCAAAAGCAGTCAGCACAAATGGACATGACGATTGAGATGATGTC AGAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTTCTTGACGAGA TTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGACGGATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCA AGACCAGCAGAATCCAATGATGTGGAAGATCTTGAAAAGAGACTGGCTTCTCTTCGGAGGATATGA
Protein sequence (LotjaGi6g1v0213700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEERKLVAEIKRTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQM APAKQAKVIQEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIGSRSAENVAP RPAESNDVEDLEKRLASLRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 181 | 181 | 1.3E-107 | – | |
| PANTHER | 1 | 181 | 181 | 1.3E-107 | – | |
| Pfam | 2 | 149 | 148 | 2.5E-31 | ||
| Coils | 109 | 129 | 21 | - | – | |
| MobiDBLite | 142 | 170 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi6g1v0213700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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