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LotjaGi6g1v0213700.2

Overview

Field Value
Gene ID LotjaGi6g1v0213700
Transcript ID LotjaGi6g1v0213700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 2-like 2; TAIR: AT5G44560.1 SNF7 family protein; Swiss-Prot: sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2; TrEMBL-Plants: tr|I3T952|I3T952_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:51232672..51238251) extracted from Lotus japonicus Gifu genome v1.2.

ATGTGGGTCACCCCAACCTATTAAATATAGGTTGAATCGAGACTTTCAACCCAAATACTAAAAGTTGGTCAATTTCCGAA ACGGGATCTGCCTTTTGGTAAAATAAAAATAAAAACGGGTAACGGCTACTTCGAGCATGACCTACGTGGATCCCCACCTA GCAGCACGCTCCACAAGGCATCTTCTCCTTTTCTTCTCAGCAAACAACATCAAACACTTCACACTCTGTGAGTCACTGTT AATCTCTCTTCCTGCTTCGTTCGTCAATTAGGGTTTTCCAGATCAACACCGACAACATGAACTTGAACATCTTCAAGAAG AAAACCTCACCCAAAGGTAAAACCCTTATTTCGTTTTCCCACTAAATCTTACTCTCGTTGGCGAAATTGGCAATTATTTG GGTTGGATGAAAATGGGAATGTGTTTGGGCAATGGTATTCATTTACGTTTGTTTGTTTGTTTTTCCTTTGACAGAAGCTC TGCGGAGTAGTAAGAGAGAAATGGCTGTTGCAACAAGAGGTAATTGATTCAATGGAAGCTGATTTAGAAGTTCTAGTATT GATTTATGTCTATTTGTATAACTAGTGAATGTACTTTGCTGCCCATGTTAAATTGTTTTCATTTGATGTGAGTTGCTTGA ATGGAGAGAGCTTTAGAGTATTTGTTTAACTAGTTGAATGTACTTTAGCCTTTAGAGTATTTTTTCTGATAAAAGATGAA TTACCTTGCTTGAATAAATGGTAATTCATGATCTTTGTTTTTCACTACTTTGTTGAATCTTCTCATGTTTTCAAATAGCG GCATTAATAGCGGCTAACGCCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCACTATAGTGCGC TATTCCTGCTATTCGCTGCCAAATAGTGGCTGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCACAATCGCGATTTGA CAACACTTCTCATTCCCTTTTCCTACCCCAACATGCCTGGCAATCCATTGATTGCAGTTGTTTGAGAGGCCTCATATGAA ATTTTCAGCTGAAAATGTTTAGGCTGATCTCATTGTTTGAGTCAAGAGTTACCCGATTTCCAAAAAACATTTGTGTTTCT TAATATTATATATACCCTTGCTCTAACTGTTCAGTGTTTATTCCAATGGTTCCTTGTCATCTGGAAAGATATAATCTAAT TGTCTATTCTATATGTTGCTGTCTGAATTAGCAACACTTCACATTTGATATCATTTGTTATGTTCACTCTGTTGATCTTT CTTATTTGTGGATGGAAATTATAAGGCATTCATAGTAATCAGCAGTGCTTCACATTCGGCATCACTATTTTGTTTTACTA CTGTATCACTTCTGTTAACATTTGTTTCCTTTTTCTTTCATTCACTCTTTCTTTCCTGTAGGAATTGAAAAGGAGATAGC ATCACTTCAGATGGAGGTACATAATGCTGACTGATGAGACCTTTCTTAGCAATTTTTTTATATTTTTCGGACATATTTTT TAGTGCTAATGCTTCGCTCCCTTGTCAACTGCAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAACCGGAA ATGAGGTAAGTATGTTTGTAATTTCTCATCCATTTCCTTATTGTTAATGAGCCCTAAAACATATGGTTTAGCATGTACTG TATGCATAGTTATTGACAATGTGACATTGATAACAATCTTTAGTTAGATGTATATCTGGTGCTCTCGTCTCACTTGGGTT ATGAGGTTTAATGAAGTTCAACTACCTCACATTTGGCCTAGAACCTGTCCATATAAAGATTTAAGTAGTCAAAATTGGGA TTTTGCCTTTAAAATCGGGAAGGAGTTGAAAATCTCGAGTCGATAGACTTTCATTGTCACCGTCGGTAGATAGTCAAGGC TGATGATTTGATCCCAATAATTCAGGGATCTCGACATTGTCTCTCTTATTATACATGTGTACAAAAGATCGTTGTAAATA TAAAATAAGTACTTAGTTTCAATTTCAAATGGATGTGATTATAATATCCATCCTTTTATTTTCCGGTGGGGACTGGAGAG AGTTGGAATATTTTTATTATAGTGAAGCACTATTTTTAAACCTGCTCAAATGTGAAACCAACTGCTGGTGTGTATGAACT GGTTCGGAATGCACGATAATAGCTATATAGCAATGCTGAATAAGGATGTGTCTGGTTACAGGCTGCCACTAGAATATTGG CTCGTCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCTCAGATCAGGGGTGTTGCAACTCAC ACACAGGTGGAGAAAAATACTCTGTTTTTTGAGATGATGGCTGGATTTTCAATTTTCCTAATTCCCAAATTTCTTTTGCA GGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGGTATGTT ATCCAGAGTCATTCTGCTTTGTATTATTCAAAGACCAAAGTGACGTAATGCCATTGTTTTTGGTTTTCTGGTAGTTAGTA ATACGAAAGGTATTTGAACTCTTGATTCTGTCATTGTCAAGGAAGAAAATAGAGAATATGTCCTATATGTTAAAAGTAAC TTAGCTTTTACTGGATATGTTGACAGAAGGCTATAATAATTCTTTTATTTCCATCCATCATTGATAGTTTAATCACGAAA TTTCTGATGTCACTGAATCAGAATTTCATAATATGTGATAGATGTTTTGTGACATTGTTAGATTTGTGAAGAATATTGTG CTTTTGACTACAATGGTACAGTAATCATTACCTTACTTTTCTTCTCAGCAAATGGCACCAGCAAAGCAGGCGAAGGTGAT CCAAGAATTCCAAAAGCAGTCAGCACAAATGGACATGACGGTAATTTATCCTTTTGCCTATATCTCTAATATGTTCTCAT GCAAGTTTCCTGCATCAACGGTAGGCTAAATACATTAGACTCTGCACAATCTGCCAATATTCTTAGACCTTGTTAGAGAC AAGGCCAGTGCTAGTCTTTGCACACTGAAAATTGAATACGGACTTATTTTTGGTTTTCCACTTCAGCAGAAAAATACTGT TGATTTGATTTTTTAGTCTAGTGCTTTGAGTGCTTTCAGTGGAGTTGGGAGCCTGCGTGAAAGCATGCTTGGTGCTTAAT GGATGCATTTAAGTAACAATACATTCAAGTAACAATAATAATAATAAATTTTAAGGAACAACATTAAACTAACTAGAATA AATTATTTTGATTATCAAATAACAATATATTCAAACTCAAGTAAAGAACTGATCAAACTTTCAAAAAAAAAAAAAAAGAA CTGATCAAATGAAGAAAAGTAACTTAACAGAGAAAGAGAGAATATTTTATGTTAGAGATATGCTATGGCCTATGCTAACC ATGAAGATGAGGACTAAGGGTTTATTTTAATTTGTTGGACTGTCATTAAGCTAGCATTTGTCAGCTGGAAACAGAAAGAG AAACAGAAACCTGTCGTTAACAATGAGTAGATGAAGTGGAACGTGGGAGTTTGTGTACTGGAAAAGGTTAAATTAGAAAC AGTGTAGAAAAAAAATTATACAAGAAGGATATACCATAGAAGGTAGAACCGTAGAATTGAGATGGGAGTCAGAACATAGT TGCAGTGATGCCTTTAAATGGCCGAATAATAGAATCAACAAAAAGCCAAGTTTCCAGGAAACGTACCTGCTTCATGTTTC GACAAGTTTGTGTTGCTATGAATGGTTGAGTTGCCAAGTTTTCTAAGGAATCTACTCTTTGAAAACAGTCTAGTTTGTTT TGGTTTTTCATTTGTTATAATATCATCTATGGCAAGCAGCTGTTGTGCCGACCTGATAGCCACAGTATTCAAGGCTGGCT CCAGCCATATCATTTGATAACATTTTCTTTCGCTCGAGAAACTTATAATGTTATCTTAAATGCAGATTGAGATGATGTCA GAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTGAGAATATAAAT AAATGACCAACATAATTGTATAGTTTGATAGTAGAAGTGAAATTTTCCTTCAAAATATCTAACTTTTATTTATTCATGAC AGGTTCTTGACGAGATTGGAGTGGATATTGCATCCCAGGTTGGTTTTGAACCCTATACGAATCTGTTAGACATACAATAT GAAAATCATTCATATGCTTTCTCTAGAGTTCGACTTTGCCACCTTATTTTAATAATAAGTTGAATTTCAGCACACCAAAG GTTCATTGTCCACACTTAAATCCATGTTCCTTTAAGGGCTTAAATTTTTTAGATAGTTGTTTGATGGTACAAGCGTTTGT CTTTGCACTTATTCTTTTCTATAATCACCTTTCTGAATGGTGGACCTGATGCTGGTCTTTTCTGATGATAGTTATCTTCT GCTCCGAAAGGACGGATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCAAGGTATACTTCAATCTTATTCGTGCATAATGC TGTTCAAATTTACATAAAATTTATATACTTAATCAAATATACACTTCTAATTAATACGTACAAGCTGTATAATAATTTTA GTAATATAAAGGAAAGTAAATATACAAGGATGACTGTATGAGTAGTGATATATTTATAAATAAAATTATGTACATATACA AAATTTCTGTTTGGAATTTGGATTGGATTGTATTGATTTTCAAATCAAATATGATCCAATCCAATAAGAAATTTTGGATT TCTTTTCCTGTTTTGGGTTTGTTTTCTTGGATGGAATCAATTCATGAACATTTTAAGGATATTCTTATTGCATAGCTACT CTTGATCTCATTGAATCCTATGACATTTTAAGTGACAAAAAATTTCTTATCGTGCATGCAGACCAGCAGAATCCAATGAT GTGGAAGATCTTGAAAAGAGACTGGCTTCTCTTCGGAGGATATGAAGATCAGCTACAGCTGCTGATAGATATGTTTCATA TTGTACAAATCATGATATATATGCTATATAGCAATATCGACACTTTATTAATGGCGCCTGGTATTATTACTGATTTTCTA CTGATGTGTTTTAGATATGAATAATTCTAGTTTGTTGGACTGGAATGTATCACTAGCAGAGACATCTATAAATTGTTTAG TCAGAAGTTAGTCCATAAATCTATTTGGTGAAGTACCAGTTACTAGACTTTCTTATTTTAACTACGCCAATTGCATTGAG CTCTCTTTTGAGTTTTGAGTATTAATCTCAGGGGAGGTCAGTGCAAAGAAAAGGTATTATTACGATACAAAAGAGTGAGT ACATGAGGTATGAGAAGTTAAATTTGGGGCATAGTTTCATACAAGATACCGTGGCTGAATACCAACTCGAAAATGAAAGA TGGCATCAGCTATGTCTGTCAATTTGTATAGGGATTAAAATGATTCCTGGTTATCCATGATAGTTATCGACTTTGCATTC TTCACATGTGTACTTTTGAATTTTCCATCTTCTTTATTAAGGATCACTTAACGGACTTCC 

CDS sequence (LotjaGi6g1v0213700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAAAGGAAATTGGTGGCAGAGATTAAACGAACAGCCAAAACCGGAAATGAGGCTGCCACTAGAATATTGGCTCG TCAACTTGTTAGGCTACGCCAACAGATAACCAATTTGCAGGGAAGTCGTGCTCAGATCAGGGGTGTTGCAACTCACACAC AGGCATTATATGCAAGTACTTCAATCTCTACAGGTATGAAGGGTGCCACTAAAGCAATGGTGGCAATGAATAAGCAAATG GCACCAGCAAAGCAGGCGAAGGTGATCCAAGAATTCCAAAAGCAGTCAGCACAAATGGACATGACGATTGAGATGATGTC AGAATCCATAGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTTCTTGACGAGA TTGGAGTGGATATTGCATCCCAGTTATCTTCTGCTCCGAAAGGACGGATTGGTTCAAGGAGTGCTGAAAATGTTGCGCCA AGACCAGCAGAATCCAATGATGTGGAAGATCTTGAAAAGAGACTGGCTTCTCTTCGGAGGATATGA 

Protein sequence (LotjaGi6g1v0213700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEERKLVAEIKRTAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQM APAKQAKVIQEFQKQSAQMDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIGSRSAENVAP RPAESNDVEDLEKRLASLRRI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 181 181 1.3E-107
PANTHER 1 181 181 1.3E-107
Pfam 2 149 148 2.5E-31
Coils 109 129 21 -
MobiDBLite 142 170 29 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0213700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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