Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0213800 |
| Transcript ID | LotjaGi6g1v0213800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein LSD1; TAIR: AT4G20380.2 LSD1 zinc finger family protein; Swiss-Prot: sp|Q6ASS2|LOL3_ORYSJ Protein LOL3; TrEMBL-Plants: tr|I3SDN9|I3SDN9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0213800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51239474..51245544) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGTTTAAATATTTTGTTGATTACAATGCACAAAAAAGGAAAACAGTGTAGAAGCTTCCTCCTCGTCCGCATGTGA AACAAACGTTGAATTTGAACAATCAAACCCACCACCTTTTCTATTCTTTCGATTTCTCCGCTGAACAAATTTTGTTCTTC GTTTTCTGAATCCACAGCAGGTAATTTCGTTACGAATTCGAAGATTTTGTTTCATATGTTAATTCTTTGCATTGCAAATT GAATTTACCTTTGATTAGGTTACATAGCTTATGAATGATTGTGTTGTTGTTGTTGTCATGGTTGTGTGAATTTTCAGGTA TGCGGTGCCAGCTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTATCCTAGAGGAGCCGGCAATGTTTGCTGTGCTTGG TGTAATGTGATTACCCCTGTTCCTCCTGCTGGTATGTTCTGTTTTGTTGTTCCTGTGATTTGAGGTTTCAATATTAGAGG AACTTTATTGCTCCATGTTTGGTATGTTGAATTAATTTGATAGTTAGCATTAGCAAGCTTGGGCATGGATTAAGCGGTTA GTTAGTTTCTAGTTTTCTCGGTAATATAATCGGTCTTATCTTTTAGGCATGGCGGGCCGAAAATGGTTAATTACTAATTT ACTAGCTGGATATGATATGAGGAGTGCTATTTCGCACCACGCGAATATGCACAACTTATGCATTTGGTTGGGAAAAAAAA ATAAGTGCTATTAATTGAAAGATATTGACACGAGGTGATAACATCCAATGGCGGAGATGCAGTTGTCGGGTTTCGTCTGT GAATTTGTCGTGTCTTTCATCATTACCGATATGAAATATGGAAATTTAATGTGGAGACAAAAACATTACCTGCATTTAGG TTCATCCCATAGGCCGTTATATATGGTTTCTTATATGATGCGAGAAGTAATGTATTGGCTTTTATGCTCTATATTGACTG TTAGGTCCTTGTTTATACTTGGGTATATCCAATCTTTCTCTATTCTATTATTTGCCGAGAATTCACATTGGGATTAATGT GGTAGTATACTATAAACTGGAAAGAAAAGGGAACTGGCTAGATTAAAATTCACATCTAGGTAGACTTTAACTGGATGGTT GCATTTGGGTACCTTTAATTTTTCTAATGCTCCTGCAGGGATGGAAATGTCACAGCTTTATTGTGGAGGCTGTAGGACAT TACTAATGTATGCAAATGGAGCTACGAGCGTGAGATGTTCCTGCTGCAACACAATAACCCGTGTACCAGGTACAATATAT TGCTACTACGTTGCCAGATTTGTGCAGATTTTTAATTGAATATGGATTTTATTGCACTGCTTGCTGACTTGACTTTTGTC GGTATTTACTTGTAAATTTTGTTCAAGACACCTATCACTTTTTAATGCTAATTATGAATCTCATGAATTTTCAGTGTTTA TTTCTTTCATTTTTAAGCATTTATACATGTATATTGTATAAACTATATACAACAAGAAAACCTTATCCCACTAAGGGAGG TCGGCTATCCGGATCGCATGACGTCATTGCGCTCGGTCAAAAATCAAATTTTACAGGATATTATTGACCACAAGGTCGCT TTTAATAATGTCTTCCAATGTCGTTGTTGACCTCTCACTGCCCCTCTTCTCAGAACTAAGACCCATCTTATTAACCCTTT ACCCTTCTCATTGATGCCTCCAAAGGTCTTCTTTTCACGTGTCCAAACCACTTTAACCGATTTTCTATCATCTTGTCGTG GATAGTTGCCACACCAATATCTCCTCGTCTGTATCTTTTCCATTCTAGTGTGTTCAGTGTTCACTCATCCATCTTAACAT TCTTATTTCTGCTACCTCAACTTTTTTCTCGCGTTGTTAAAGCCTAACATTCGCTACTATAGGGGATAGCTGGTCGTTTA GCGGTTCGGTAAAACTTTCCTTTGACCTTGGTAGGTACTTTGCAGTCACAAACAAGTCAATGTTTTTCTCAACTTTAACC ACCCAGCCTGAATTCTGTGTGTCACATCTTTGTCGATTTCTCCATTTGTTTTGTAATAAATCTCAGGTAATTAAAACTGT GAAACTTGTGGTATGACGTCGTTTACAATTTTTACTTCCAAATTCTTCTCATCTTGTGTGTTACTACAATTGCAATGCAT ATGCTTTGTCTTACTCCTGCTTAAGCAAAAGCCCTTAGATTCCAACGTCTTTCTCCAAATCTCAATTCTCAAGTTTACAA TTAACCTCTTCCCTGAACTTTCAATTAGAAAAATATCATCCGCAAACTGTATATAAAATCATCATAACAGCCAACCCATC ATGCACTCTAATGCTATGCTATAGCCTTTTTGGGATTGGCTGCTATGCATTGCTATCTGGGAATGACATATTGGGGGGAA ATAATTAAATTAAAACCTTAAGGTTTCCTATAGCTTTGTTTTAAATTCCTTACTATTTGAAATTTATAACTTTCTTCTGA TCATTTCCTAGACAGAATATAATTCGCTGCATTAAATGGCAAAAAACATGGATAAGTTGCCACAACCACATAACCCCAAA ACTTGGATTATTGTTAATTTGATTCTGTATTTTATGCTGATGACATGACAATTTGTATTGGTAAATGTTGTAGTCCAATG AGCTCTACAATAAGGGTATTATATGCATAAAACTTATAAGCACAGAATGTTGGGTTTTTATGAAATTTCGTTGAACGGGT TCCATTTTCTTCATCTTATATCATTCCAATGATGAATTCGATTGTTTTATTATAACAACTGATGCTTATTAAACAATTAT TTGCTTAAATTGTTCACTGACTTCTTTTTGATGCGATTCGTGTGTCAAACAGAATCTAACCAAGTCAGTCATATCCATTG TGGGAACTGCCGGACAGCACTCATGTATCCTCATGGAGCTCTCTCAGTCAAATGTGCAATTTGTCACTATATTACTAATG TCAGTGTAAGTATACATCGATAGAATAATATTGATACTGTGCATTTACTTTCTATTTTACCAAATTCTTTGGAAATCGTA AAATAAAATAGGGTTCATTTTGTTGTAAATTAGGCTTTCAGCAGTAATGTTCACTTTGTAGTTTCAATTCTATGGTTGGT TTCTTTAACGTTTTTCTTTAAATCTAGTTGTGTCAATCTCAGTCCTTTTGTCAGAAGACTAGAAAGTTTAGATGATTAGA TTTGAAGAATTGCATAGAAGTTGCGGCTAGTTGATTGGTTCTATTTTGAATCGTCTAGGTTTTCCTCAATACGAAAGACC CATTTGCAGCCAGTTGGCTCTCTATTGGTAGGTAAAGGGACCAAGGATAAGGTGGAGTTTCTGTGATGCATCCAACTCCA GTTTTTTGAGTGAGTGGATCATAGGGCGAGTGTTTAGGGGGTGGGACATGTGGGAGCAGTGGCGGAACTTCAACAAAATT TATGGGGGAGCTCAAATAAATTTAAATATATAAATTTTGAAATATTTTACTAACACCAAAAAAATATTTCATAGAGAATC AAAAGTCATTAGTCTAAGTACATAAATATGTTAATTCATATATTGATATCATATACTAAAATCAAAATAACATAAAATGT TGCTAACAATAATGAAATAACTAAATTTCCTTACATAAAATATTAGTATTATATTTATTTTTATAAGCTTGTTTTGTTGG GTAAGTCCCTACTCTTTCTACTTTTTCTAGTACTGTGACTTTTTTTAAAAAAAAAATTGGTATTGTGACGCTGACATAAG TTTTATTAGTTTTATATATTTTTTTGTACTAAATTGCTCTCACAATTTAAACCCTTGTGTGATGAAGGTTAAATATATTT TCAGAAATGAGGCTCCTGAGGATCAAACACTCAACATATAATTTAAACAACAACTTTTTATCATTGCAATTAACACTTGT TAGGTAATATATATGATTTTTACAGTATAATATATCCTATATACTAAAAGTTTTTTTGGCCAAATCTCTGAGGGAGCTAC AGCTCCCCTATGTCCACCAAAAGGTCCGCCACTGTGTGGGAGGGTTGACACCCGGGAGAGGGAATGGGGATGAGGAACCA GGACTAGAGTGGTAGATAGGTTTGGCATTGGATGTAGTGATTTGTGGAGGAGGGTGAGATATTCGGTGGAGACTACACAA GGGAATAGACTCAGGAAGTGGGGACATGTGGGAGGGTTGACACCCGGGAGAGGGAATGGGGATGAGGAACCAGGACTAGA GTGGTAGATAGGTTTGGCATTGGATGTAGTGATTTGTGGAGGAGGGTGAGATATTCGGTGGAGACTACACAAGGGAATAG ACTCAGGAAGTGGGGAAGACTGGGTGAGCAAAGGCAGCGGTAGGAAAGAGAATAGGGAAAGGGAAATTTTCCTCATTGAA TGTGATAGACATCCTTTGAGATATTGAGCTTGCATACCAATTCCAAGGGAGATGTTTAAGTGAATGAGGTTAAATGAGAA GAAAGTCTATGAGACTTTCCAAGGCAACAAACATAACAAAAATCTAGGAACATTACAAGATTGTAGTACAATGTGAAGTG TATCATGATTGGGGTGGCCAAGTCTAGAGTGCCACACAGCAAACAGGTATTTGCCCTAACAGTGTTAATGGTTGAGTTTG AGAATGCCCCCAGTGCATTCGCCGGCAGGGAGAAAGCAGGTGAGGCCGCTGCAATCGGTCACCCTTACTGGCGATGGCAG AGATTGCATCGAAGAATTTTGAGGGTCACCGCCGGACTCCATGATTTTCTATTGAAGCAGGGCTCCGATTAGGCATTGGC TCTTGATACCTTATTAGGTTGAGGGAGTTTGAGAAATGAATTTTGATTGTGTTCAGCAGTGTTCCATACACAAATATATA GAGTAATGAGGAAGTTACACTGGAGACCACTGCCGTAGCTAACTCTAACAATACTAAGAATATTAACTAACTGAGGAGTG AGGATACACTAGGATCAGGTCCATGCTATACTATGTTATGGAACTGGCAGCTGATCCAACATCTGACAACTCTGATTTCT TTATGCGTTTTACTTCATATCATCATGACATGAAATCTTAAAAATATGATGTGATTCTTTTTGCATTTTATGTTGTTTTT CTTTGTGCTGATTTTTTCTACCCCTTCATGGCTTTGCCTTCATCCTTCTGTAGATGACCAATGCAAGGTTTCCAATTCTT GTGCAGAGATCTAATGGAACAACCGAGTCTGAAACGACCACCTCTGAATCTGAGATAGCATCTTCTATTTCATCAGTATG CTTTTGACTTTTTCTTTTGATGATTGTTCATGATACATACCGTCAGTCTTTTGTTGTGATATCTAATGAATATACGTATG ATCCTATTCCCTGCAGTCAAGGCCCCACTTCGAGAGCCAAACTGTTGTAGTAGAAAATCCCATGTCTGTTGATTCAAATG GGAAATTGGTAATTATTATTTCTTTCTGTTTTTTGTTAGCTTGGGATATGTATTCTTCTACTACATTTCACTTATTTTTC TATGATTTTTTAGCAAAGCAAGATTTATTTATGAGAACCTAAACTGTAACAGGTGAGCAATGTTGTTGTGGGCGTTGCAA CAAACCAGAGATGATAATCATCATGTTATGATGCTGTGTTAAAAGAAACATTATCCGGCTCGTTATCAGTTTCCGTTGCT TGAAGATATTGTTTGTGTACTTGATGTTGCAGCTGCAATGGTTTTGAATTGAGAATATTCTCCATACAAGGTCTAGACTG ATTTCATGTATTTATATGTAAAATATTAGAGAAGTGAAAAGAGCACAATGCTTGTAATCTTTGCTGCATTTGTATTATAG CCATGTAGGTTCTTACTTCTTAGATTATATCTTTAATTGCATGTTCTAGATGTGCAAATAAGATGGTGATGTTGATAATA GTTTCAGGCTTAAATATCTTTTTGATCCCTACATTTTTTTATTTGGTTTGGATAATTATTTTTTAGAAATTACCCTTTAC TCTATATTTTTAGAAATCACCATAAATTAGTCCTAATTTGTTTTTCTTTTGTTTGGTTTGGGTCCCTTGGC
CDS sequence (LotjaGi6g1v0213800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTGCCAGCTTGTGTGTAATGGGTGTAGGAACATCTTGGTTTATCCTAGAGGAGCCGGCAATGTTTGCTGTGCTTG GTGTAATGTGATTACCCCTGTTCCTCCTGCTGGGATGGAAATGTCACAGCTTTATTGTGGAGGCTGTAGGACATTACTAA TGTATGCAAATGGAGCTACGAGCGTGAGATGTTCCTGCTGCAACACAATAACCCGTGTACCAGAATCTAACCAAGTCAGT CATATCCATTGTGGGAACTGCCGGACAGCACTCATGTATCCTCATGGAGCTCTCTCAGTCAAATGTGCAATTTGTCACTA TATTACTAATGTCAGTAGATCTAATGGAACAACCGAGTCTGAAACGACCACCTCTGAATCTGAGATAGCATCTTCTATTT CATCATCAAGGCCCCACTTCGAGAGCCAAACTGTTGTAGTAGAAAATCCCATGTCTGTTGATTCAAATGGGAAATTGGTG AGCAATGTTGTTGTGGGCGTTGCAACAAACCAGAGATGA
Protein sequence (LotjaGi6g1v0213800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCQLVCNGCRNILVYPRGAGNVCCAWCNVITPVPPAGMEMSQLYCGGCRTLLMYANGATSVRCSCCNTITRVPESNQVS HIHCGNCRTALMYPHGALSVKCAICHYITNVSRSNGTTESETTTSESEIASSISSSRPHFESQTVVVENPMSVDSNGKLV SNVVVGVATNQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 1.2E-74 | – | |
| PANTHER | 1 | 170 | 170 | 1.2E-74 | ||
| TIGRFAM | 4 | 32 | 29 | 3.7E-11 | ||
| Pfam | 7 | 30 | 24 | 6.1E-10 | ||
| TIGRFAM | 43 | 73 | 31 | 1.1E-14 | ||
| Pfam | 46 | 70 | 25 | 1.5E-12 | ||
| TIGRFAM | 81 | 110 | 30 | 1.9E-12 | ||
| Pfam | 84 | 108 | 25 | 4.6E-12 | ||
| MobiDBLite | 114 | 139 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0213800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…