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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0216600 |
Transcript ID | LotjaGi6g1v0216600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT4G24130.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q5UQ90|YL532_MIMIV Cytochrome P450-like protein L532; TrEMBL-Plants: tr|I3SEE7|I3SEE7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0216600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51853369..51855102) extracted from Lotus japonicus Gifu genome v1.2.
CAATAACCAACACTGGTAGCAAAAATCGGTTGAACAACCACAACATTCAAATCAGCCAATTCTGCTCAACCTCCAGTTGA ACCCCACCAATTTCCCTTCCAATGAAAAACCTTCTTCAATTTCAGAGGCTATTTATTCTATTATGATGAAACCATGTCCT CCATAGTTAACACTTAACACATATCTTTCATTTAAAAGAAAAACGTTAACACTTAACACTCAATTTTCTTGCAATGGCTA GCAGCAACAGCAGCAGCAATGAGCGTGCAGGGGCAGAGATAGTGCACGGTTCCGAGAACTGCTACCGCCACTCGATAGAG CTCATAGAAGAGCTTGGATTCCCCACAGGGGTCCTTCCATTACAGGACCTTGTGGAGTGTGGCAGAGTGAGGGAGACAGG ATTTGTTTGGATGAAACAGAAAGCTCCAATTGAGCATTTCTTTGAAGGGACTAAAACTCTTGTGAGCTATGCAGTGGAGG TCACTTGCTACGTGGAGAAGTTCAAGATGAAGAAGATGAGTGGGATTAAGAGCAAGCAAGCGTTTCTCTGGGTGCCTATA TCTGAGATGAGCATGGATGGTCCTGGAGCAAAGAAGATTGTGTTCAAGACTCCTTTGGGGATTGGTAAGTCTTTCCCTGT TACAGCATTCATGACCATTGAGGAGAAGGAGAAGTACTTGCAGGGTAAGAAGGAGGAGGAGATTAAAGAAAATTGTTGAA ATGTGACAACTTAATTGGATTGGAGGTGGAGCTAGCTCCATGTTCTTGATAATTTGATTATATTTGAATAATGAATAATA GATAAGGTCTAATGAGATCTTGATTATAAAAGATCATCAAGTAGAATATATAGTGTTTACTATGTATGCATTGTTGTTTT GATGATGCTGATTTAATATGCATTCACATTTTGTTCTGTTAAATTATTTGTTGGTTTTTCTTAGAATAACTGACTGCTTT CTTAAATAGTATTTCGTCAAGAAGAATTCTTTAGAGTTTGGAGAACTATGTCAATTCAAGAGTTTCAAAGAGGGTATGGA TATGTCCTCCATCTTATAATTACTCTTTCTACATGTAAAATATTAATTAGCTATTAAACATTGTGTTTCTAATTACCAAC ATGGAATTGAGAAATTAAAGACAAAAAAGATAAAGGACTATTTCAGCATGATTTCCCCTTTGGGCTAGATAGCTCTTAAT GTTGATGGAAGCTCTCTTGGTAATCCAGAAAGGGCAGGCTTTGGGGTGTGTTAAGAAATGACACCAGGGATTGGTTTTTG AGTTTCTCTAGGCACTTGGGTTATATAAAGATCCTCAAGGCGGAGCTTTCTGCCATCTTTCAAGGGTTATCATTTGCCAT AATACTGGGTTTTGCTCGAATTAAAGTTTTATCTGATTCCATGATGGCCTTGGAGCTAGTTCGGAAGCCTGTGCCTAATA TGCTTCTATCGTCGAGGCCATGGAGCATGTGCCTTGGTAGGTTGATTTTGCATTTTTTGCTCATATCCTTAGAAGGTAAT TCAGCTGCTGATTTCTTTGCGAAGCTGAGAGCGTCATCTCCTACGGGTTGGTTATTCACAATAGGCCCCCTAATGGCATC AATTCTCACAGATGCTCTTGGAGCTCCTTCTTTGAGGATTTAGTTTTCTCGTCTCTTTTGCTCATTTTACCAAAAAAATG TTCAGTGTATACCCTTTGAGTGTAGACTGGAATGGGGGGAAAATAATATACCAA
CDS sequence (LotjaGi6g1v0216600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCAGCAACAGCAGCAGCAATGAGCGTGCAGGGGCAGAGATAGTGCACGGTTCCGAGAACTGCTACCGCCACTC GATAGAGCTCATAGAAGAGCTTGGATTCCCCACAGGGGTCCTTCCATTACAGGACCTTGTGGAGTGTGGCAGAGTGAGGG AGACAGGATTTGTTTGGATGAAACAGAAAGCTCCAATTGAGCATTTCTTTGAAGGGACTAAAACTCTTGTGAGCTATGCA GTGGAGGTCACTTGCTACGTGGAGAAGTTCAAGATGAAGAAGATGAGTGGGATTAAGAGCAAGCAAGCGTTTCTCTGGGT GCCTATATCTGAGATGAGCATGGATGGTCCTGGAGCAAAGAAGATTGTGTTCAAGACTCCTTTGGGGATTGGTAAGTCTT TCCCTGTTACAGCATTCATGACCATTGAGGAGAAGGAGAAGTACTTGCAGGGTAAGAAGGAGGAGGAGATTAAAGAAAAT TGTTGA
Protein sequence (LotjaGi6g1v0216600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSNSSSNERAGAEIVHGSENCYRHSIELIEELGFPTGVLPLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYA VEVTCYVEKFKMKKMSGIKSKQAFLWVPISEMSMDGPGAKKIVFKTPLGIGKSFPVTAFMTIEEKEKYLQGKKEEEIKEN C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 6 | 148 | 143 | 2.1E-19 | ||
PANTHER | 7 | 159 | 153 | 2.3E-79 | – | |
PANTHER | 7 | 159 | 153 | 2.3E-79 | ||
SUPERFAMILY | 8 | 145 | 138 | 1.06E-37 | ||
Pfam | 29 | 139 | 111 | 1.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0216600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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