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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0217500 |
| Transcript ID | LotjaGi6g1v0217500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT1G48280.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|K7MCA1|K7MCA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51966266..51970794) extracted from Lotus japonicus Gifu genome v1.2.
GTACAATTATTAAAAACTAGTAAGAATAAGACTAGGACGAGTAACATGTAGTACAAGACACAAGACTAGATGGAAATTTT CTGTATATACCCTACCTTGTATTGTAGTTCATCGTATCCTTAGCCTTTGGATATGTGTCACTTTCTTTTTTGGTGTCCAA GTTAACCAAGTTAATCTCTATAATTGTGCTTTCCCATGTCATACAAGGTGATTTGGTGACATTTGCATTGCAATGTGCCA TTAATTAAGAAGAAGGAATAAAGAATCACCATTTCAGACTCCATTTCAGAACAAGAGCCATGAAGCAAAACATGCCACCC CCACAACCACCACCAACAACATCAATAAAAAGTTTACTAATGCTCCAGAACAGATTAAAGCCAACAAGATTCAGAACTTC TTCCAATTTCACCGAGCCTCCAAAGACACCACCAGAGGTTGTCAATGGGGTGGTGTTATCATCATCATCATCATCATTAT CATCAAGAAGAGCTAAGTCTGTAACCCCGGAATCGAAGAACAATTCAAGGGCCAAAAGGGGTCTTGTGATGATGAACAAG TCCAAACCCAATGAGGAGGTTGAGGGAACCCAAAAGTGCAGGGAAGTTGAAGAGGCTAAGGTTGCGGCTCAATATGCGAG TCGTCATTCCGTGGAACAGCTTGCTCGGCCTAAGAGAGGGGTTGGAGATTTTGTTTTGAAGATGAACAGAGAGGAAATTC ATGGGAAGAAGGAATTGCTAGAGAAGCTTGAGGTGAGGGAGAGTTTGATCAAGAATTTGCAGTCTGAAGTGCTTGCATTG AAAGCTGAGTTGGGTAAAGTTAAGAGCTTGAATGTGGAGTTGGACTCTCACAACAGAAAACTCATTCAGAATCTTGCTGC AGCTGAAGCTAAGGTGGCTACTATTGGTAGCTGTGAAAAGGTGAGAATCCAAAATTCCAAATGTTAATGGTTTTCTTAAA TAGTCTTAAGGGAAAATAAATGAATGCTGGAATGTTTTTTTTTTCTTTGACGGGTGTGAACCCGTTCGAGAAACTGTGAG TGACAGTCAAATTTGTGTCATCATCTTACGAGGATCTAGCTTTCCTACCATTGGACCAACACCTTGTTGGTGGAATGTAT TCTGCTTCTTTCTGTAATTATACTTTTTAGTTTGATTAGCCCATTTATTTGAATCATCAACTGCTGTTTGATTGAGTTTT TTATAGTGTTATATTCCAATGCAAAAATGAGATCAAATATCAGTTTTTGTACAAGGGTTATCAAGTATCATCTGTTTGAT GCCTTAAAATTGAGTCTTTACTTTTATAATTGTTGAAGGAGCCAATTGGAGAACATGAGAGCTCCAAATTTAAACATATA CAGAAACTCATTGCTGACAAATTGGAAAAGTCCAAGTTGAAAAAGGAAGCCATTACTGAAAGTTGCATTGTTAAAGAACC AGTTCCAGCACCAAAAGCAGTTCTTGCCATTCCTGGTGCTACATCTTCAAGAATAGGAACAAATCCTACACCGAATTCAT GCATGCCACCACCACCTCCACCACCAATACCGCCCTCAATCCCTTCAAGGCCTATCGCGAAAGCAACTAGCACACAAAAG GCCCCTTCATTTGAAAAATTGTTTCACTTGTTGAAGAATCAAGAAGGGATGAAAGACACCAATGGATCAGTTAAACAGCA GAAACCAGTAGCTGTCAGTGTACATAGTAGCATTGTTGGAGAGATTCAAAACCGTTCAGCTCATCTTTTATCTGTAAGCA CTGTGTTTTTGTATTCAATTGCTGGTTATTAATTTCTGCTTCCTGTTTAATTTAGTTTTACCTTAAATTTGTCCTTTATA GATAAGGGCAGACATTGAAACAAAAGGAGAGTTCATTAATGGACTTATAAAGAAGGTGGTAGAAGCAGCATACACGGATA TTGAAGATGTCTTAAATTTTGTTAATTGGCTTGATGGTGAACTCTCATCATTGGTAAGTTTGTAGAAACTAGAAAATTTA TTAATCTTGTTGGGCAGCTGAGTTGTGTTAATTAATTGTCCTTTGGGATAATGACATATCAGATGTGTATTTTTTTGTGA TATAACATATATAGTTTTATTCTACTATAAATTTAAAATGGTGTAATAGTTATAAACTGCTGTAAAAAGGGAGCGATTTC TTAAATTCTGCATGTGTTAGTTCAGAGTAAAGACCAATTTTCTTTTACTGATTTTGCATTTAATGTTACTCCCACCATAC TTCTGGGTTTGTTGGTGCACTCAGTTTAATAGCATGTTTGGATCAGTTTTTCTTTCTTTGGAATCAATTCTAAAACCTAG AAACTACTCACGGGAGCTTTTCCACAGAATTGATTTTGGCTCTAGAATCACTTGTAGAAGGATTTCCAAACATGCACTAA CCCTACTCATATAAGTCCCATGAGGAAGCCTGGTTAAGTTAACAGGCACTCAGGCAGAGCTACTTGGTTATGTAGTTTGG CAATGTCCATCTATAAAGTTTTATCAGTAGCTGAGAAATAGCTATCATACCAAAATACAATTGAGTGTGTTTTAAGGTGA TATTTTGATCAAATTCTATAACTGAAAATATTGCTAATGGTAGGTTGCTAACTTGCTGTTGATTTCTTACAAGCTCCATA TTCTGTTTTGTGCAGGCTGATGAGCGCGCAGTTTTGAAGCATTTTAGTTGGCCTGAGAAAAAAGCCGATGCCATGCGCGA AGCGGCAGTCGAGTACCGCGAGCTCAAACTGTTAGAACAAGATATTTCCTCCTACAAGGATGACCCTGAAATTTCATGTG GAGCTTCCTTGAGAAAGATGGCTAGCCTATTAGACAAGTAAAAGAAATAGATCAATATCATGTATTTAGTATTAGTGTTA AATATGCTAGGGTTATAGTTTTAGGGGGTTCTTACACTCTACTCTCTCCTCTCATTGTGATAGATCTGAATACAGCATAC AGAGGCTAGTCAAATTGCGAAATTCTGTGATGCGTTCATATCAAGAGTACAAAATACCAACTGCTTGGATGCTTGATTCA GGAATGGTTACCAAGGTATCTTTGTTATGTTTCTATCATGTGTTACTTAGTAAGACTTGTTTCTGATCAGCAATTAGAAG TTTTATTTGAATTGCATTTATTATAGTTGAAATTAGTGTGTTTGGTTTCCTGTTTGCCTCAACGCAAACAAGAAAACGCA TTCCAAAGCACACATGAAAAAAAGATTTTGCCACGTTGACTTCAACATGGACTGACATTGAGTTTAACGGAAATCAAAAC ATACGGTCTTCTTTAATAAATATAGTACTAAATTTTTTGACTTGCAATGTATGAGCCATAGTTGCGCACAATTTTCTTGC ATTTAGTCGCGCTCCTCCACCATATATTGCTTTACTTTTTTGGTCTTGATTTGTGACTCAATGAAAATGAAACTCAACAT AGGAAGTTGACTGAAAGAATATTTTTCAGTTTAGTCCAAATCTGTTGCAATTGGTTACCCATGTACACATGATTTATTGT TTTTAGAGTGGAGAGGGAATTGTATTCATACTTCATGATCATGCTAAATTTCCAATTTGCAGTCACAAAACCTGATTTGA TAGTAAAAAATATGCCATATTTGTAGATAAAACATGCATCTATGAATCTAGTAAAGGTGTACATTAAAAGAGTGACAATG GAGCTTGGATCGGCTCGGAACTCAGGCAGACAATCCAGTCAAGAATCCCTTCTGCTTCAGGGCATGCATTTTGCATATAG AGCTCATCAGGTATTTTTTAAGAAGCTGTCCTTTTTTTTTTCTTATACTCAATATTGATTTCGTTATATATTAGGCTGAT TCACTTATTTTGGTATGTTTTTGCAGTTTGCTGGAGGTCTGGATGCAGAAACTCTGTGTGCTTTTGAAGAGATAAGGAAA AGTGTACAAGGACACTTAGCAGGTTCTAGAGAACTTTTGTCTGGCATAGCATCATCATGAGAACTGAGAAGCCCCTGATA TATGTTATGCTAATCTTAATGGTTAGAAGAAATATGAATGAACATCAATATATTCTGAAGAAAGAACATTCCATAAAGTA GTTGAGGATGTCAAATGGCTAATCTGTTTTCAAATGGTCACAATAGAATGAGGTCTCCTCTAAAGTTGATCCCTCAAGAA CTCATTGAATTTGTCACTGAGATCAGATTTAGTAATTAAAGGACATTGAGGTTTAATTAGAAAAACACATGAATTAAATT AGTAATAACAAATTCTCAGTGTAATAAAAAATTATCATGGCTTAAAATTGTTTAAAATAAATATATAGTGTTAGTGTCAA GATTTCTTATCTACCTTGAATTTTCATCATTTGCTTTTATCACATTCACAGATCAACATACTGCCTCAATTGATCTAATT TCTGTTGACACTTCAAAATCTCTAACATAAAAGGAAAAACTTCTTGAAATTGTAAGTTTTGCCACAAAGAGAAAATAAGT AACATTAGTTACATTACTAAACAAAGGAAAATTCATTTGATCCTGTTGA
CDS sequence (LotjaGi6g1v0217500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAAACATGCCACCCCCACAACCACCACCAACAACATCAATAAAAAGTTTACTAATGCTCCAGAACAGATTAAA GCCAACAAGATTCAGAACTTCTTCCAATTTCACCGAGCCTCCAAAGACACCACCAGAGGTTGTCAATGGGGTGGTGTTAT CATCATCATCATCATCATTATCATCAAGAAGAGCTAAGTCTGTAACCCCGGAATCGAAGAACAATTCAAGGGCCAAAAGG GGTCTTGTGATGATGAACAAGTCCAAACCCAATGAGGAGGTTGAGGGAACCCAAAAGTGCAGGGAAGTTGAAGAGGCTAA GGTTGCGGCTCAATATGCGAGTCGTCATTCCGTGGAACAGCTTGCTCGGCCTAAGAGAGGGGTTGGAGATTTTGTTTTGA AGATGAACAGAGAGGAAATTCATGGGAAGAAGGAATTGCTAGAGAAGCTTGAGGTGAGGGAGAGTTTGATCAAGAATTTG CAGTCTGAAGTGCTTGCATTGAAAGCTGAGTTGGGTAAAGTTAAGAGCTTGAATGTGGAGTTGGACTCTCACAACAGAAA ACTCATTCAGAATCTTGCTGCAGCTGAAGCTAAGGTGGCTACTATTGGTAGCTGTGAAAAGGAGCCAATTGGAGAACATG AGAGCTCCAAATTTAAACATATACAGAAACTCATTGCTGACAAATTGGAAAAGTCCAAGTTGAAAAAGGAAGCCATTACT GAAAGTTGCATTGTTAAAGAACCAGTTCCAGCACCAAAAGCAGTTCTTGCCATTCCTGGTGCTACATCTTCAAGAATAGG AACAAATCCTACACCGAATTCATGCATGCCACCACCACCTCCACCACCAATACCGCCCTCAATCCCTTCAAGGCCTATCG CGAAAGCAACTAGCACACAAAAGGCCCCTTCATTTGAAAAATTGTTTCACTTGTTGAAGAATCAAGAAGGGATGAAAGAC ACCAATGGATCAGTTAAACAGCAGAAACCAGTAGCTGTCAGTGTACATAGTAGCATTGTTGGAGAGATTCAAAACCGTTC AGCTCATCTTTTATCTATAAGGGCAGACATTGAAACAAAAGGAGAGTTCATTAATGGACTTATAAAGAAGGTGGTAGAAG CAGCATACACGGATATTGAAGATGTCTTAAATTTTGTTAATTGGCTTGATGGTGAACTCTCATCATTGGCTGATGAGCGC GCAGTTTTGAAGCATTTTAGTTGGCCTGAGAAAAAAGCCGATGCCATGCGCGAAGCGGCAGTCGAGTACCGCGAGCTCAA ACTGTTAGAACAAGATATTTCCTCCTACAAGGATGACCCTGAAATTTCATGTGGAGCTTCCTTGAGAAAGATGGCTAGCC TATTAGACAAATCTGAATACAGCATACAGAGGCTAGTCAAATTGCGAAATTCTGTGATGCGTTCATATCAAGAGTACAAA ATACCAACTGCTTGGATGCTTGATTCAGGAATGGTTACCAAGATAAAACATGCATCTATGAATCTAGTAAAGGTGTACAT TAAAAGAGTGACAATGGAGCTTGGATCGGCTCGGAACTCAGGCAGACAATCCAGTCAAGAATCCCTTCTGCTTCAGGGCA TGCATTTTGCATATAGAGCTCATCAGTTTGCTGGAGGTCTGGATGCAGAAACTCTGTGTGCTTTTGAAGAGATAAGGAAA AGTGTACAAGGACACTTAGCAGGTTCTAGAGAACTTTTGTCTGGCATAGCATCATCATGA
Protein sequence (LotjaGi6g1v0217500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQNMPPPQPPPTTSIKSLLMLQNRLKPTRFRTSSNFTEPPKTPPEVVNGVVLSSSSSSLSSRRAKSVTPESKNNSRAKR GLVMMNKSKPNEEVEGTQKCREVEEAKVAAQYASRHSVEQLARPKRGVGDFVLKMNREEIHGKKELLEKLEVRESLIKNL QSEVLALKAELGKVKSLNVELDSHNRKLIQNLAAAEAKVATIGSCEKEPIGEHESSKFKHIQKLIADKLEKSKLKKEAIT ESCIVKEPVPAPKAVLAIPGATSSRIGTNPTPNSCMPPPPPPPIPPSIPSRPIAKATSTQKAPSFEKLFHLLKNQEGMKD TNGSVKQQKPVAVSVHSSIVGEIQNRSAHLLSIRADIETKGEFINGLIKKVVEAAYTDIEDVLNFVNWLDGELSSLADER AVLKHFSWPEKKADAMREAAVEYRELKLLEQDISSYKDDPEISCGASLRKMASLLDKSEYSIQRLVKLRNSVMRSYQEYK IPTAWMLDSGMVTKIKHASMNLVKVYIKRVTMELGSARNSGRQSSQESLLLQGMHFAYRAHQFAGGLDAETLCAFEEIRK SVQGHLAGSRELLSGIASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 98 | 73 | - | – | |
| MobiDBLite | 26 | 42 | 17 | - | – | |
| PANTHER | 27 | 577 | 551 | 4.9E-232 | – | |
| PANTHER | 27 | 577 | 551 | 4.9E-232 | ||
| MobiDBLite | 49 | 81 | 33 | - | – | |
| Coils | 133 | 198 | 66 | - | – | |
| MobiDBLite | 262 | 282 | 21 | - | – | |
| Coils | 412 | 432 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0217500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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