Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0219800
Transcript ID	LotjaGi6g1v0219800.1
Lotus japonicus genome version	Gifu v1.2
Description	Haloacid dehalogenase-like hydrolase superfamily protein; TAIR: AT4G33140.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp\|Q97DU2\|Y3379_CLOAB Nucleotidase CA_C3379; TrEMBL-Plants: tr\|A0A151R368\|A0A151R368_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0219800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:52308853..52312879) extracted from Lotus japonicus Gifu genome v1.2.

AATTATCATTCGAAGTGAGCAACCATGTCTTTATCTAATTATCGAGTGCCGCCATGATTCTCTCTATATATAAAGCTAAC CACAAGCTTGATCACCATTTTTAGAGAAACAACAACAACATAGGATTGGAGAAGCAAGATCGCACAAATTCCGACATTGT CTTTTGTTTCAATTTAGGGCATATTCTGTTCTGAGCATTGGGGCATCTTCCAAAAATTCTTCTCAATCTGATCCATTTCT TCCTCAGGTTTTCCGTCAATTCCTTGCTCACACACTCTCCCCATCAAAAATTTCTCTCCTGGTCCTGGATCTTCGTTTGT TTGACTTAGGTTTACCAAGTTCTGTTTTTTATTTTCAAATTCACTATTATACTCAAGACATTCTCGTTCAGATTTTTTTT GTTGGTTGAGGATGTTTTTCGATGACCCTTTTGTTACCACATGATAATTTCTGATCAAAGTTTGATCCTTGATGCACCAT TGAATTGTTCTGATCAGTTTGATTCTCAGACTGGAATAAATGTCTTTGCTTTTTTGAACAGAGTTAAAATTTCACATGCT GCAAAATTTTCATGGTTTTGAGGCAATGATCCTGTGTGCTTTTTGATTCAGCAGTTTTTGCATCACCAATCTTGTTCCCA TGGCTCATTTGATAACCTATGATCCTAGTACCCATTTCAGCAAGGCTTTTTCCAAGTACCCTTCTCTTTCTTCTTCTGAG GTTAGAAGAGGCATTAGGTTCACTCTTAGAGGCTGCTATGATGCTAGTGGCAGTGTTAATGGTAATAGGGTCTTTCTGAA GAAGGAAAATACAAAGGGTTTTTCATATCTTCCTCGGCCCCCCTTGTTAGGTGGTTTAGAGAAGGGTACTTCTGTTAGAG ATGATGGCCGTGATGCTAATCATGTTAATGTTGAACATGGATCTCCGGGTGGAAATCCTGCTATACCCTTTTGTTTCCCT GATCAACATGCTTCTCAGAAACTGGTTGTTGCTGTTGATGTTGATGAAGGTATGTATCCAGAATGGTGATCATTTTCCAG TTGTAGTATTCGATTGCATTGCCTTTTCTTTATTTTTTTTTTCCTATATGCAGTTAGTGTTAAGAAAAAGTAGTCAGATT ATGCTGCAATTTTGTCAAAAGCTTCATACATGTTGGATATATATTGTCCTGAATTTTGCATGGTACATGTGTGAGTGAGT TGAAGCATATTTACATTTACTTTTGTTAAATGTGAACTTATAGAGTTTTAGGATTATCCACCTTTGCTTTCCCTCTGATG TGTATGTTTTTATCTGGGTTTTTTCCCCCATTTGCAGTGTTAGGAAACTTTGTGTCAGCTCTAAACAAGTTCATAGCTGA TCGGTACTCATCAAATCATTCAGTTTCTGAGTATCATGTGTACGAGTTCTTCAAGGTATCTCATGGTGACTGCTTCAGCA ATTCTATGTTTTCAGTAATTGGAAATTTGGAATTTGCATTAACAATAATTAAACAACTTGCATGTTCTTTCAGAGGCCAG TTTTATTGAAACCATACTTATGAAGTTAGGCTTATTAGATGATTTAACATTATTTGGTATTAGTATTCCATGATGTATTA TGCATGACATATGTTTAAGTTAAAGATTTGTTAGCTGGGGGTGTGGGAATTTGCAATGTGTTTTATCTTTTTGTTTTTCA TTTTGCCTGGTGCCTGCATGTTTTAAATGGGGAACTTTCTTCTGCATTTAGTGACAGGGTATCATCATTAAGTGCTTTAT TATTACGATTTCATATTTCCATTACTGTTTTTCTGTTATTGGCACCGCATACAAGATCCAGGGACATATATGTTCCATCT ATATCTACCCTGATGTTTAGGGACTGAATTTTGTGTAAATCTTTCCTTTTTCTGTAGAGTACTACTAATGAATAGAATAT GGATTTTTCTTCTTACTCCAGCTCTTTGATGGCTTTCTCAATGTTTTTAGACTTTTTGTAACCCTTCACTCTGTGCGCTT TTACATTATCTTGCCTTGAGGTGCAACTTATTGATGCTCAAAGTTTATCTGACTTTGCTCCCCTAGGTGCTACTGAAGAA AATTTCACTGATAGAAATTTAATCCGTACCCTTAGCATTTAGTCTGCTGTATAGCATTGAAGTTTGAGCATATTCGTATT TGAGATGTCTGATGCATCCTTCATTTCTGTTACAGATATGGAACTGTTCACGTGATGAAGGTAGCATCGTCCGTCGGACA ATTACCCTGATAATGCATATTGTGAATCAGTCTTGCTACTCTATTTCTAATGAAATTCTCTGGAATTATCAATAAGATAA TAAAAAATTCTTTGAAATTCTTAGGATTATATGATGGTGGACTGGTTAAAAATTAATACCTTTTTCTTGTGCAGCTAATA ACCGTGTTCATGAGTTTTTTAACACACCATACTTCAAGTCGGGGATCCACCCCATCCCAGGCGCTCAGGTGGCCCTGCAG AATTTATCAAGATTTTGTAACCTATCAATTGTAACGTATGCTTCTGGTATTGATTTTACTTCAACCTGCACTAAAATCTG GTTACCATCCACTAATAGCTATTTGCATATGTCAATGATCAGATCTCGGCAGAATGCAATCAAGGACCACACAATCGAGT GGATAGATAAGAATTTTTCAGGGTTGTTTCAGGAGATTCACTTCGGAAACCACTTTGCTCTTGATGGGGCGTCAAGACCA AAGTCAGAGATTTGTAGGTATGTCAACCTTCAATTCTCTCCTTTTGCCTAAAACCTGGTGCCTTATTATCAACTTTTTGA ACTATGCTCTGCATAGGCAGATCCAAATCCTTCTAGTTCTATGTCCCTTTTAAAGTTGAAGCCTTACAGGTTCAGATGCT TGTTGTTGATAGATTCTTATGCACTGTCAGGTCTTTAAATGCTAAGGTTCTTATTGATGACAACCCCAGATATGCCATAG AGTGCGCTGAAGTTGGAATTAGAGTTCTACTTTTTGACTATGAAAACTCCTATCCTTGGTGCAAGACTGAGTTTGCTGAC CAGCATCCTCTAGTGAAGAGAGTTAAGAACTGGGAAGAAGTTGAACAACAATTGATGTCATTGGTAGTTTCATAGTTAGC ACTAGATCCTGCAGCAGGATTTGTTAAAATACTCTTTTTAGATGAAGTACTGGACTATATTTCTTGTCTGAAATATTTAG CATTCATGAAAAAGAGATTAGGTCTAGGCAGAAAAAATATAACTTAGCCGATTATGTTATTTCCCCATTTTGAGCAGTAA CAAAAGTTGTTCATTATGCCAAAACATGTTGGCTATTTACAATGTTCTATGGTGTTGGATCTTACAATAGTAGAATTCTT TTCTGGGTTGGGTTATTTGGTTATATGTGGATCAAATGTAGGAGGAATTGGTTATGTGGATCACATTTCATCATTGTGTC AGGAGCAGAGTTTTTGGGAAGGTTATTTAGATTTTAAGTCCTTTCCAATGGTTTGGCTTGTAGTTTTTAATTGTTTTATT TCTAATTATTAAGCTATTCTTCACATAATCAACTCTTGTTTGACCTTTTCCAGTTTTGTAATTGTTTTATTTACTCAGAT CAAACTTTGCTAGTCAATCACTTACGAGCTATGATGCATTAAAGGGAAATATAAACCCTAGGTGAGAGTTTACTAATTGC GGCCGCTACCTTCCCTCCCCCAATGAGTGGTCTGGTGAGGATTTTCTCCTCAATAACCAAGTGAACACAGTTTCAGCTGC CACCCCCTCAGGGGGATTTTCTTCTCCTTTTGAGGGTTAAGGTGGCTGTTTTTATTTTGTGAGAGTTTATTTTCTCCTTT CCCTACCTCTCCATCCCCATCAAAGCCTCCATCTAACGTTTCCTCCTCCATTCATCGAGATCTTCTATCTCCCATTTGAT CTAGAAGGATGAGAAAGAAAACAAGATAGATCACAGGGCATTAATGAACCCATCTACTTAATGAAACACAATTGGGTGCT CCTCCTAGGAGGATAATAGAAACCCAA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0219800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCATTTGATAACCTATGATCCTAGTACCCATTTCAGCAAGGCTTTTTCCAAGTACCCTTCTCTTTCTTCTTCTGA GGTTAGAAGAGGCATTAGGTTCACTCTTAGAGGCTGCTATGATGCTAGTGGCAGTGTTAATGGTAATAGGGTCTTTCTGA AGAAGGAAAATACAAAGGGTTTTTCATATCTTCCTCGGCCCCCCTTGTTAGGTGGTTTAGAGAAGGGTACTTCTGTTAGA GATGATGGCCGTGATGCTAATCATGTTAATGTTGAACATGGATCTCCGGGTGGAAATCCTGCTATACCCTTTTGTTTCCC TGATCAACATGCTTCTCAGAAACTGGTTGTTGCTGTTGATGTTGATGAAGTGTTAGGAAACTTTGTGTCAGCTCTAAACA AGTTCATAGCTGATCGGTACTCATCAAATCATTCAGTTTCTGAGTATCATGTGTACGAGTTCTTCAAGATATGGAACTGT TCACGTGATGAAGCTAATAACCGTGTTCATGAGTTTTTTAACACACCATACTTCAAGTCGGGGATCCACCCCATCCCAGG CGCTCAGGTGGCCCTGCAGAATTTATCAAGATTTTGTAACCTATCAATTGTAACATCTCGGCAGAATGCAATCAAGGACC ACACAATCGAGTGGATAGATAAGAATTTTTCAGGGTTGTTTCAGGAGATTCACTTCGGAAACCACTTTGCTCTTGATGGG GCGTCAAGACCAAAGTCAGAGATTTGTAGGTCTTTAAATGCTAAGGTTCTTATTGATGACAACCCCAGATATGCCATAGA GTGCGCTGAAGTTGGAATTAGAGTTCTACTTTTTGACTATGAAAACTCCTATCCTTGGTGCAAGACTGAGTTTGCTGACC AGCATCCTCTAGTGAAGAGAGTTAAGAACTGGGAAGAAGTTGAACAACAATTGATGTCATTGGTAGTTTCATAG

Download CDS Sequence

Protein sequence (LotjaGi6g1v0219800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAHLITYDPSTHFSKAFSKYPSLSSSEVRRGIRFTLRGCYDASGSVNGNRVFLKKENTKGFSYLPRPPLLGGLEKGTSVR DDGRDANHVNVEHGSPGGNPAIPFCFPDQHASQKLVVAVDVDEVLGNFVSALNKFIADRYSSNHSVSEYHVYEFFKIWNC SRDEANNRVHEFFNTPYFKSGIHPIPGAQVALQNLSRFCNLSIVTSRQNAIKDHTIEWIDKNFSGLFQEIHFGNHFALDG ASRPKSEICRSLNAKVLIDDNPRYAIECAEVGIRVLLFDYENSYPWCKTEFADQHPLVKRVKNWEEVEQQLMSLVVS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR35134 View details on PTHR35134 Search for proteins/transripts with this domain View external data on PTHR35134	1	316	316	2.2E-171	–
PANTHER	PTHR35134:SF4 View details on PTHR35134:SF4 Search for proteins/transripts with this domain View external data on PTHR35134:SF4	1	316	316	2.2E-171	–
ProSiteProfiles	PS01124 View details on PS01124 Search for proteins/transripts with this domain View external data on PS01124	1	31	31	8.754	IPR018060 Show description in modal box View details on IPR018060 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF56784 View details on SSF56784 Search for proteins/transripts with this domain View external data on SSF56784	104	312	209	1.61E-14	IPR036412 Show description in modal box View details on IPR036412 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06941 View details on PF06941 Search for proteins/transripts with this domain View external data on PF06941	115	311	197	3.0E-14	IPR010708 Show description in modal box View details on IPR010708 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1000 View details on G3DSA:3.40.50.1000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1000	117	279	163	6.8E-11	IPR023214 Show description in modal box View details on IPR023214 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.40.40 View details on G3DSA:1.10.40.40 Search for proteins/transripts with this domain View external data on G3DSA:1.10.40.40	128	180	53	6.8E-11	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0008253 View details of GO:0008253 AmiGO InterPro QuickGO	Molecular function	5'-nucleotidase activity	Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.	Subterm of View details of GO:0008252
GO:0009264 View details of GO:0009264 AmiGO InterPro QuickGO	Biological process	Deoxyribonucleotide catabolic process	The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.	Subterm of View details of GO:0009166 View details of GO:0009262 View details of GO:1901136
GO:0043565 View details of GO:0043565 AmiGO InterPro QuickGO	Molecular function	Sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.	Subterm of View details of GO:0003677

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0219800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0219800.1