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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0220600 |
| Transcript ID | LotjaGi6g1v0220600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein Red; TAIR: AT2G26460.1 RED family protein; Swiss-Prot: sp|O48713|SMU2_ARATH Suppressor of mec-8 and unc-52 protein homolog 2; TrEMBL-Plants: tr|A0A151R9N6|A0A151R9N6_CAJCA Protein Red; Found in the gene: LotjaGi6g1v0220600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52423755..52428867) extracted from Lotus japonicus Gifu genome v1.2.
GGCAATTCTAAACCCAGGGGTGGGAAATCTAATTCCCGTGACCTTGGCCCCTGAATATGCTTCTGGCGTTCCCTCGCAAA ACCCTAGCTCCATTGTCAAATCCTCTCTTCCATTCCAACACCGTTCAATCTTCACGAGCAATAGCTTCATTCAATCTCTT CCGCCATGACCGCGCCCAAGAAAAATCACAAGGAGAAACCAATTCGCCGCAAGTAAGTTCAATCCAATTTCATCCATTTT CACAATCACATCGTTTCTCTGCAAATTTTTGTGTATGCATGCGTTTGATGAAGTTTTTCTTGTGATGTTGTGATTGATAG TGATGATGTTGTTACAGGGAAGAGAAACCGGAAGAGCCGGAACTTCCGAAATATAGAGATCGAGCTAAAGAGCGTAGAGA GGATCAGAATCCTGATTATGAGCAAACTGAACTTGGATTTCATGCTGTTGCTCCTCCTGGTACTGTAGATCCCCGGTAAG GTTTTCGCCGCCTTATTAGACAAATTTGTATGGTTCATGTTTGTGGTTGGAGTTTCTCGATTATAGCGCGAACCGAAAAG AGTGTTTGGTCTTTCTCTAACAACAATGTGGTGATGTTTTGTAGGTCATCTGATGCACACAAATTATCTATTGAGAAGAG CAAGTACCTAGGAGGTTTGTAACTTTGTAATTCAATGTTATTTGTTCTGCATAAACCAATTGTTGTCCTGGTTTGCTTAG AAACAAATGGTCTGAAGTGTGTTTGATTACCCGTTTCGCCTAACTAATTAGGTTTTTGGTTTCTTTTATTGTTGTATGTG TAATAAATGCTAATTACTTTGTAAAATTTGAGAGGGTTTGCTACTGGGGAATCGGATTTTAAGTACATTGGAATCGTAAG CATAAAATGTATTGAATTCACGATTCAATACGTTTCGTTTGTCACAGTTATCCCAAACATAGGTGATTTAAAGTTTCCAT ATATCGTAGACTCTAATATTCAACCATATAATATAGTTCGGCTTGCTTTCGATGATGTCGATCCACCCAATCCAATTAAG GTTGCTCTAACTGAGTGGGACTTCTTAGGCATACAGGGTGCTTGGAATTTAGATTCCTTATACCGTGTCCCTCCATAATC TATTTCCTTTTCTGCTACGTGTTGTTTTTTTCTTAATTATATTGTGGCTTGCATTAGGATGGAACATTTGTCTCTATTAT TACAAGCATGATTCTGGAATTGATATATATGTGAATGACATGTACCTTAACTTAACAAATGAGGCTTAATTGAGATGGTA ATCCTAATAACTTGGCATGTTGGCTTTAATGATATTGGTCAGGTGATGTGGAGCACACACATTTGGTCAAAGGTTTGGAT TATGCTTTGCTGAATAAAGTAAGAAGTGAGATTGTTAAGAAGCCAGATGCTGTTGATGATGTTGATGGGAAATCCAGGTA TTTTCGAATCAGAATTGTCAGTGATTGTAGTTATGTTGTTGTGCCGTTATGGATTAAATGATTTTATGAATTCTAAATAT TTATCTTTGGTGAATCTTACTTTTAATATGTGCTTGTGTTTTTTGACAGAGCATCTAAGGAAGACCAACAAGTATCAATT CGCACAGCAACTGCAAAGGTTCTTTTTGTAGATTTATATAAAATAGAAACTGGAGAATAATTTTGCAAATTTAAGTTGTA AAATTGAAACTGCTACGTTAGGAGTTATTAGAGCCCGTTGATATTGATACTTTTTATATGTGTTTCAGTCAGTTTATCAG TGGATTGTGAAGCCTCAGACCATTATTAAGACGAATGAGATGTTCCTGCCTGGTCGAATGACATTTATTTATGACATGGT GAGAATTTCTGTTTTGTTGACAAGTTAATGATGTTTCAAAAGATTCTATGGCTATTTCCCATTTTTCAGTAATATTTATT TAGCATTTAGCTTGTTTTGAAAACTCATTTTAGCCTTCACTGTGATTATATGAGAAATGAGGAGTGAATACCGAAGGTTA TATTTATATGAGTATTCACACTTATGATATAACCATCAAGTCCTGTGACTTCATTAAAAGAATATGTGATGGTCTATGTT GTTTTAATCTTCACCATTCTCAGGGTTATGCAATGCAGAATCGATCATGAACAAAAGTTGTGGCTGTTGTGCAATGTTAA CCTATGGCTAATACTACATGTTGCATCTATCTGTTTTTATTTGGGTCTGCATAAGGAATATGATACCTGGATATGATAAT ACTCATAGTAATGAAGGGAACAGAGAGTTATTCAATATACCAGATATAATAGATATCTTAAGAATAGGGTGGTTATTTGG CAAAGTCAGGGTTAATAAAACTCATGTCTGTGAACTGTTTGATCTAATTCTTTTATATTATACCTTTTAAATTCCCTGAA AGCAAATTTCTGACAGAAATTCTCATTTTTAATATGGTAGGATAGTGGATTTCATCATGATATTCCAACAACCTTGCACC GCAGTAAAGCTGACTGTCCAGTGCCAGAGGTTTATGATCTTGCCGATTCCTTTTTGACATTTGCCCAATTACACTGGACA GCTTGTCTCTACATACATTGCCTTATATGCTTTGCTTCATTCTGCACAGGAAATGGTTACAGTTAATGTTGACGGGTCTG TTCTAGATCGAATTGCTAAAATAATGACTTATCTTCGTCTTGGTTCTTCTGGGAAAGTCTTAAAGAAGAAAAAGAAAGAA AAAGATGTAAAAGGTAATACTGCCCTGAGCAGATCATTTTAGAATTTTTTATTATCATATTCTAGACGCACATTTAGTTT TCTTAAAAAACATGCTGCTGTATCTTAGGTGTATTTCTGCATTTTAGTTATTTTATGTAAAAGATCAGGATGGGTTTGTT CATAACTCTAAGCCATAGTTCGACGTGAATTTCTTTTATTATAAATGAGTGTGAAACTCTTGTTTTTTATTAGTTTGAGT TGCATAGGTCAATGATGTTGAGGAATTTCTCAATGTTAGAGAAATAACCAGGGAGATAATGAATGATAAACATTCATTGT ATCCTTTCTCGTGGATCAAGAACACCATGTGAAAATTCTCTCATGTTAAAATTGTGTCTATCTCTCTCTTCACATTTATG CATTAAATAGGTATAGGTGGGAGACCCTTTAACTGTTTATGAAAAGAGAGATGGACACAATTTCAACATGAGGAAACATG ACAGAATTTGCGCATGAGAGGATCCTAGTCCCCTTTCTCATGCACATTTTTTAAAATAATTTTTCTTGGAATCAATAGCT AAGCTAATAGGTTCCTGCCACACTCCCTTTTTTTCCAGGTAAAATTTTGGCTGCTGGTAATGGATATGACAAAGAGGATA AGCCAACAAAGGTTGAAGGTGGGGGGTTAAAGAATCAAACCGAAAGTGAATTCCTTCCGCCACCTCCACCTCCACCTCCC ATAAAGAAAAATCCACTTAATTCAAGAGAGAAACAAGGCCCAGCTGTTGCTAGAACAGATGATGATGACATTTTTGTAGG TGATGGTGTTGAGTATGAGATACCTGGTAAAGACCCGAGCCAGAGTCCTGTCTCTGAGGACATGGAAGAGTCTCCTAGGA ACAAAGAAAAAACTTCATATTTCACTGAACCTAGTTATGGTCCTGTCCCACCCTCCATGCTGCCTCAAGTGTGGCAAGAA CCGGTAAGTTTGTGCTGTTTATTTTAGTGTTGGATCGTTGATTTACTAGTGGAATATGATAGGAAAAAACTCCCTACTCC TGCCCCCTTATTTATAATATTTGCTTCTCTTAAGATTTATTATGCTTGACTTATGTTCAATGGTGTATTGAGTTTACGTG TACTTTGATTTCGCTGTTTGGTCTCAGAATGGATATGATGTAATGCAAACACAAGCCTTGGCTGGTGGCTACCAAGGAGA GTGGCAGGAGTACCAGTATGTTGAACAACTGGCTTACCCAGATCAATATCTTCAGCCAGACATGCAGACTTATGATGCAC AAGCAGATTTAAATATTCCACAGGATCCACGCTTCATGACTCAAGAAGAAAAAGATCGAGGTTTAGGATCAGTGTTTAAA CGAGATGACCAGAGACTTCAACAGCTTAGGGAGAAAGATGCTCGTGAAAAAGATCCCAACTTCATCTCGGAGAGTTACTC TGAATGTTACCCTGGGTATCAAGAATATAACCGTGAGGTAGTGGACAGTGATGATGAAGCCGACTTGTCCAAAATGGATA TGGGTGGAAGGGTAAGTAACCTCTACTTACTGATGAGGAAATTGACTGCATTTCTTTTTATTTAATTGAAGTGGCTTACA AGTTACAATATATCTTGTCATCATGACTATTGTACATTTATACTTGCTTTTATCTCAAAATAACTAGTTGGCAAAAATAA TTTTGTTGAAACTGCTTCTGGATTGAGTCATATTGTTGTCCACTTAGAAGTGATAACTCAATTATGTGGTGAAAATTGGA GTATTGAAATCTGAACTCTCAACAGGCAAAGGGACGTCTTCATAGATGGGACTTTGAAACTGAAGAGGAATGGGCCACAT ACAATGAGCAGAAGGAAGCAATGCCAAAAGCTGCATTCCAGTTTGGTGTGAAGATGCAAGATGGGCGAAAGACACGAAAG CAAAACAAGGATCAGAAGCTCAACAATGACTTGCATAAGATCAATAAGATACTTGCCAGAAAGAAGATGGAGAAGGATGG TGGGAATGATGAGGGTGGCCAACAATATGATGACTCACCTCAACCTGGAAAGAAGCTTAGAGTATGAGTCCCGGTCACTA CACTGTAACATAATATTTATGGAATGAGACGAGAATTTAATTTTGTCTGAAGTTGATTATGTACTAATATGATGTATTTT TTTTCCTTTTATAGAATCTTTATTCAGGCTGTTTTCTCATGTTCATAGAATTCATAGAACAAAGAAAAAACAGCAATAAG ATCAACCGAGTGTGTAAAACGATGTTTTTTTTAAAGGAAGGGTGTAAAACGATGTTAAATCTAACATCAACTAGTGTTAA GAGAAGTTACAGCCTAAAACCTAATTTATTTTTAAAGTAATGCAATTTAGTTTATATGTTAAATTTAGTTTCA
CDS sequence (LotjaGi6g1v0220600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGCGCCCAAGAAAAATCACAAGGAGAAACCAATTCGCCGCAAGGAAGAGAAACCGGAAGAGCCGGAACTTCCGAA ATATAGAGATCGAGCTAAAGAGCGTAGAGAGGATCAGAATCCTGATTATGAGCAAACTGAACTTGGATTTCATGCTGTTG CTCCTCCTGGTACTGTAGATCCCCGGTCATCTGATGCACACAAATTATCTATTGAGAAGAGCAAGTACCTAGGAGGTGAT GTGGAGCACACACATTTGGTCAAAGGTTTGGATTATGCTTTGCTGAATAAAGTAAGAAGTGAGATTGTTAAGAAGCCAGA TGCTGTTGATGATGTTGATGGGAAATCCAGAGCATCTAAGGAAGACCAACAAGTATCAATTCGCACAGCAACTGCAAAGT CAGTTTATCAGTGGATTGTGAAGCCTCAGACCATTATTAAGACGAATGAGATGTTCCTGCCTGGTCGAATGACATTTATT TATGACATGGATAGTGGATTTCATCATGATATTCCAACAACCTTGCACCGCAGTAAAGCTGACTGTCCAGTGCCAGAGGA AATGGTTACAGTTAATGTTGACGGGTCTGTTCTAGATCGAATTGCTAAAATAATGACTTATCTTCGTCTTGGTTCTTCTG GGAAAGTCTTAAAGAAGAAAAAGAAAGAAAAAGATGTAAAAGGTAAAATTTTGGCTGCTGGTAATGGATATGACAAAGAG GATAAGCCAACAAAGGTTGAAGGTGGGGGGTTAAAGAATCAAACCGAAAGTGAATTCCTTCCGCCACCTCCACCTCCACC TCCCATAAAGAAAAATCCACTTAATTCAAGAGAGAAACAAGGCCCAGCTGTTGCTAGAACAGATGATGATGACATTTTTG TAGGTGATGGTGTTGAGTATGAGATACCTGGTAAAGACCCGAGCCAGAGTCCTGTCTCTGAGGACATGGAAGAGTCTCCT AGGAACAAAGAAAAAACTTCATATTTCACTGAACCTAGTTATGGTCCTGTCCCACCCTCCATGCTGCCTCAAGTGTGGCA AGAACCGAATGGATATGATGTAATGCAAACACAAGCCTTGGCTGGTGGCTACCAAGGAGAGTGGCAGGAGTACCAGTATG TTGAACAACTGGCTTACCCAGATCAATATCTTCAGCCAGACATGCAGACTTATGATGCACAAGCAGATTTAAATATTCCA CAGGATCCACGCTTCATGACTCAAGAAGAAAAAGATCGAGGTTTAGGATCAGTGTTTAAACGAGATGACCAGAGACTTCA ACAGCTTAGGGAGAAAGATGCTCGTGAAAAAGATCCCAACTTCATCTCGGAGAGTTACTCTGAATGTTACCCTGGGTATC AAGAATATAACCGTGAGGTAGTGGACAGTGATGATGAAGCCGACTTGTCCAAAATGGATATGGGTGGAAGGGCAAAGGGA CGTCTTCATAGATGGGACTTTGAAACTGAAGAGGAATGGGCCACATACAATGAGCAGAAGGAAGCAATGCCAAAAGCTGC ATTCCAGTTTGGTGTGAAGATGCAAGATGGGCGAAAGACACGAAAGCAAAACAAGGATCAGAAGCTCAACAATGACTTGC ATAAGATCAATAAGATACTTGCCAGAAAGAAGATGGAGAAGGATGGTGGGAATGATGAGGGTGGCCAACAATATGATGAC TCACCTCAACCTGGAAAGAAGCTTAGAGTATGA
Protein sequence (LotjaGi6g1v0220600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAPKKNHKEKPIRRKEEKPEEPELPKYRDRAKERREDQNPDYEQTELGFHAVAPPGTVDPRSSDAHKLSIEKSKYLGGD VEHTHLVKGLDYALLNKVRSEIVKKPDAVDDVDGKSRASKEDQQVSIRTATAKSVYQWIVKPQTIIKTNEMFLPGRMTFI YDMDSGFHHDIPTTLHRSKADCPVPEEMVTVNVDGSVLDRIAKIMTYLRLGSSGKVLKKKKKEKDVKGKILAAGNGYDKE DKPTKVEGGGLKNQTESEFLPPPPPPPPIKKNPLNSREKQGPAVARTDDDDIFVGDGVEYEIPGKDPSQSPVSEDMEESP RNKEKTSYFTEPSYGPVPPSMLPQVWQEPNGYDVMQTQALAGGYQGEWQEYQYVEQLAYPDQYLQPDMQTYDAQADLNIP QDPRFMTQEEKDRGLGSVFKRDDQRLQQLREKDAREKDPNFISESYSECYPGYQEYNREVVDSDDEADLSKMDMGGRAKG RLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKINKILARKKMEKDGGNDEGGQQYDD SPQPGKKLRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| PANTHER | 3 | 563 | 561 | 2.9E-188 | – | |
| PANTHER | 3 | 563 | 561 | 2.9E-188 | ||
| Pfam | 5 | 221 | 217 | 7.7E-77 | ||
| MobiDBLite | 234 | 345 | 112 | - | – | |
| MobiDBLite | 258 | 272 | 15 | - | – | |
| Pfam | 446 | 552 | 107 | 1.3E-43 | ||
| MobiDBLite | 514 | 570 | 57 | - | – | |
| MobiDBLite | 515 | 554 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi6g1v0220600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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