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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0222200 |
| Transcript ID | LotjaGi6g1v0222200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT1G19210.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017; TrEMBL-Plants: tr|I3SZ39|I3SZ39_MEDTR Ethylene-responsive transcription factor ERF017-like protein; Found in the gene: LotjaGi6g1v0222200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52692887..52694021) extracted from Lotus japonicus Gifu genome v1.2.
TTTCGATTTTAGCTAGGATCACAAAAAGAACAAAAACCGTGACACATTTTAAGTGTGTGTGTCGGAAATTAAGAGAAATG GTGAAGCCAAATAATGTGGAAAAACCTGCCAGGGAACAACAACGTGATTCCTCGTACCGAGGAGTGCGGAAGAGGAAGTG GGGAAAATTCGTGACGGAAATCAGGTTGCCCAACAGCCGCCAGAGGATATGGTTGGGTTCCTATGACACTGCTCAGAAGG CAGCGCGTGCATTCGACGCAGCCATGTTCTGCTTACGTGGCACTGACGGGTGCTTTAACTTCCCCGACGACCTACCGGAC ATTGCCGGCGAGAGGTGCATGACCCCCTCTCATATTAGAGTCGTCGCAACCCGTTTCGCCAATTCGGAGCCCCAGATGGA TAATTCAGGTCGGGCCGTTAGAGCCCCTGTGGAATCGGAGGAGATCAGTTTGCTGCCGATGGAGTCACTATCTCCTCCTC TCTCTGAAGTGACAATTGCAACTGATAGTGACGCCACATCCAGCGGTTCGTCGTTCCATGATTTGTTTTCCGTAGCTGAG TCGGTTAATTACGACTCGGATTACTATGCTTTTCTGGGTTTTGATGATTTTAATGGGGATTTTTACATGCCGGAGCTGCC AAGTTTTGACTACACAGAAGAGAACACTGAGGGGTTGATATTTCAGGATTCGTTCTTGTGGAATTTCTAGAAAAGGCGAG TCAGTATTGCAGATAGTTTTATCATATTCGGACCAGTGGCGGACCCAACCTTAAATGAGGGGTTCAGATGAAACCCCTGA AAAAATATTGCACTTACCCCCCTATATAATTTTTTTCTGAACCCCCTGAAAATTTTAAATTATACTAATAGACAAGTTTT GCACCTATTTGCACCAAAGACCCACAATCACTTACTTCTCTCACTAAAAAAATTGCACTTACCCCCTATATATTTTTATT GATGTGTTCATTTGAAAAATTTGAACCCTAACCTTGGATCCTGGATCCACGACCGATCTGGGCCAAGTCGGGTTTGGCCA TGGGTCAAAATTTATAGGACCAAGTCCTCTGCTAATTTGGTACTAATCAAAATAAAGAGTTAAAGTCAACCTTGCTGATA AGAATTATACACACC
CDS sequence (LotjaGi6g1v0222200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGCCAAATAATGTGGAAAAACCTGCCAGGGAACAACAACGTGATTCCTCGTACCGAGGAGTGCGGAAGAGGAA GTGGGGAAAATTCGTGACGGAAATCAGGTTGCCCAACAGCCGCCAGAGGATATGGTTGGGTTCCTATGACACTGCTCAGA AGGCAGCGCGTGCATTCGACGCAGCCATGTTCTGCTTACGTGGCACTGACGGGTGCTTTAACTTCCCCGACGACCTACCG GACATTGCCGGCGAGAGGTGCATGACCCCCTCTCATATTAGAGTCGTCGCAACCCGTTTCGCCAATTCGGAGCCCCAGAT GGATAATTCAGGTCGGGCCGTTAGAGCCCCTGTGGAATCGGAGGAGATCAGTTTGCTGCCGATGGAGTCACTATCTCCTC CTCTCTCTGAAGTGACAATTGCAACTGATAGTGACGCCACATCCAGCGGTTCGTCGTTCCATGATTTGTTTTCCGTAGCT GAGTCGGTTAATTACGACTCGGATTACTATGCTTTTCTGGGTTTTGATGATTTTAATGGGGATTTTTACATGCCGGAGCT GCCAAGTTTTGACTACACAGAAGAGAACACTGAGGGGTTGATATTTCAGGATTCGTTCTTGTGGAATTTCTAG
Protein sequence (LotjaGi6g1v0222200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKPNNVEKPAREQQRDSSYRGVRKRKWGKFVTEIRLPNSRQRIWLGSYDTAQKAARAFDAAMFCLRGTDGCFNFPDDLP DIAGERCMTPSHIRVVATRFANSEPQMDNSGRAVRAPVESEEISLLPMESLSPPLSEVTIATDSDATSSGSSFHDLFSVA ESVNYDSDYYAFLGFDDFNGDFYMPELPSFDYTEENTEGLIFQDSFLWNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 6 | 210 | 205 | 2.6E-68 | – | |
| PANTHER | 6 | 210 | 205 | 2.6E-68 | – | |
| MobiDBLite | 9 | 23 | 15 | - | – | |
| SUPERFAMILY | 18 | 78 | 61 | 6.41E-19 | ||
| Gene3D | 18 | 78 | 61 | 1.3E-25 | ||
| Pfam | 18 | 68 | 51 | 1.5E-10 | ||
| CDD | 18 | 78 | 61 | 2.46404E-29 | ||
| ProSiteProfiles | 19 | 76 | 58 | 21.127 | ||
| SMART | 19 | 82 | 64 | 3.7E-28 | ||
| PRINTS | 20 | 31 | 12 | 1.9E-9 | ||
| PRINTS | 42 | 58 | 17 | 1.9E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0222200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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