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LotjaGi6g1v0222300.1

Overview

Field Value
Gene ID LotjaGi6g1v0222300
Transcript ID LotjaGi6g1v0222300.1
Lotus japonicus genome version Gifu v1.2
Description DUF581 family protein; TAIR: AT1G74940.1 cyclin-dependent kinase, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3S700|I3S700_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0222300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:52699581..52701200) extracted from Lotus japonicus Gifu genome v1.2.

CAATTATATTAGAACCCCTAAGAAACCTTCCTAGCTATTTGGTCTTATAAAATACACTCCCATATCTCACCCTTAGTCTA GCACAAACTCCTATCTCCTCCCTCAATTCTCTCCACAAATTCTTGTCATGTTGGGCAAGAGATCCCAGCTACTAATCCGA AAAGTTTCAGAATTATTAGTTTTCGGTGACGGCGGTGCCGCCGCGCTTCTGGACACCATGGAAAGCCCAAGAAGCCCGTT TGAGCTGAACTCACCTAGAGGTATGAAAAAAAGCTACGATTCTGGCGGTGTTGGACTGGGAATTGTGGCGGCTCTTGACA AATCCCAGCAGCACCATGAGGTTCTTCTGCCCAAACCTGCTGTTTGTTCTGGACCAATCCCAGTTCAAACCGTGAAACGT GATAATCAGTTTCCAAAGATTGTTGTTGGAAGCCCAGAGGATTACACCTATGTGACTTACCATGAACCCAACAAAACCGC CACAAAGGTGGTTTACTATGATGGTGGTGAAGGTAGAATTTTCAGACATGGTTATGAATATGATATTAAAAACAAGAACA AGGTTGGTGTTTTCAGAAAAACCCCACCAACGCAAACTTCAGTGAAAGCTGAATCATTATTTCCCACCTCGGATTTTCTA AGTTCATGTCATCTATGCAGAAAGAAACTACATGGAAAAGACATATACATGTACAGGTACTACTACTACTATTACTAGTA TAAATTTGATAACTTCATTTGAATTTGGATTGTGGGACTTGGATTTATGAGTCAAATTTATTTTTAATGTGCAGAGGAGA GAAAGCATTTTGCAGTACAGAGTGTCGTTCAAGTCAGATAACGATGGACGAGCGCAAAGAGCGGTGTAGATCAAAAGCTT CAAGGTCTGTGGAGTTGTCAAGCTCTCAAAATTCAAGGGATCAAATGTTTTCAACTGGGATTGTGGCCCTTTAGCATTTG GTATCTATATCTATCAGTGGAAGATTCATAATTTGATGTATATGTGCCAAATCTTGGTTGTAGTAGCCAAAAGGAAAATT TTGATACAAAAAATAGAGATTTTGGTGTAGTGAAGACTAAAATGGCTTCATTTTTTGATCCTTGTTGTTATAGAGAATTA CGAACTTGAGATCTCAATTGCACAGATTTTGTTTGTTTTGTTCCTGAGTTCTGTTTAAAACAAGAACTAGTTAAAATGTT CAATCAATTAGAGATTGTTCCTGAATTCAGTTTTTCTGTTCATGTGGTTTGTTGCTTCTACTGCTTTTCCCTTTCTCCAT TATTTGTTACTTGAGAATTTGAAGTGGAAAAAGAAAAGAGTTTGGGTAGATTTTTTAGATTTGGTGGTAGTTTGATTGAG AGGATAAAATAGTGGAAGAGAAAGAAAAACTTGTGGATCCCACATCTTTTACTTCTCTTTTTAAAAAAGGAGAAAAAGAA CTCTCATTACATTTATTTTTTTTCCATAGACTTTGTCAGATTCTATTCTATGCTTGCTCATCATACCTATTATTTGCCAC TATGCCTCATAATACCTATTATTAATTATTGAAGACATTTTGTTGTTCGAACAGAAAAAAAATACTTCTTTACTCTTTCC CCAATTTTTACCCAATAAAC 

CDS sequence (LotjaGi6g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGGCAAGAGATCCCAGCTACTAATCCGAAAAGTTTCAGAATTATTAGTTTTCGGTGACGGCGGTGCCGCCGCGCT TCTGGACACCATGGAAAGCCCAAGAAGCCCGTTTGAGCTGAACTCACCTAGAGGTATGAAAAAAAGCTACGATTCTGGCG GTGTTGGACTGGGAATTGTGGCGGCTCTTGACAAATCCCAGCAGCACCATGAGGTTCTTCTGCCCAAACCTGCTGTTTGT TCTGGACCAATCCCAGTTCAAACCGTGAAACGTGATAATCAGTTTCCAAAGATTGTTGTTGGAAGCCCAGAGGATTACAC CTATGTGACTTACCATGAACCCAACAAAACCGCCACAAAGGTGGTTTACTATGATGGTGGTGAAGGTAGAATTTTCAGAC ATGGTTATGAATATGATATTAAAAACAAGAACAAGGTTGGTGTTTTCAGAAAAACCCCACCAACGCAAACTTCAGTGAAA GCTGAATCATTATTTCCCACCTCGGATTTTCTAAGTTCATGTCATCTATGCAGAAAGAAACTACATGGAAAAGACATATA CATGTACAGAGGAGAGAAAGCATTTTGCAGTACAGAGTGTCGTTCAAGTCAGATAACGATGGACGAGCGCAAAGAGCGGT GTAGATCAAAAGCTTCAAGGTCTGTGGAGTTGTCAAGCTCTCAAAATTCAAGGGATCAAATGTTTTCAACTGGGATTGTG GCCCTTTAG 

Protein sequence (LotjaGi6g1v0222300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGKRSQLLIRKVSELLVFGDGGAAALLDTMESPRSPFELNSPRGMKKSYDSGGVGLGIVAALDKSQQHHEVLLPKPAVC SGPIPVQTVKRDNQFPKIVVGSPEDYTYVTYHEPNKTATKVVYYDGGEGRIFRHGYEYDIKNKNKVGVFRKTPPTQTSVK AESLFPTSDFLSSCHLCRKKLHGKDIYMYRGEKAFCSTECRSSQITMDERKERCRSKASRSVELSSSQNSRDQMFSTGIV AL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 242 242 2.2E-93
PANTHER 1 242 242 2.2E-93
Pfam 164 211 48 1.2E-23
ProSiteProfiles 169 212 44 24.734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0222300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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