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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0222700 |
| Transcript ID | LotjaGi6g1v0222700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT3G42950.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3T6P8|I3T6P8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0222700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52753437..52757402) extracted from Lotus japonicus Gifu genome v1.2.
TCAATCGCCAACAACACACTCCTAAACCCACGTTATCATTGGCTGAATCAAGCTCCACTCTGTTGTGATTCCGTTTTTGA AGAATAATGGTAGAGAATCCAGGGCCACTGGCTCGGTTTCAAGCACCCTTTACTTCTCACAGGACCCTTTTTGCGTTTCT GTGTGTTGCTACGTTTGCTTCTGTTTTTCTGTGGCAGGGGAATGAGATTAATGGGTTTTTGGTGTTGGGTGGTGTCGTTT CGGGGTGGACGCCGCCGTTGCTGCGGCCGGTGGCGTTCAATTTGACGGATTTTGGTGGGGTTGGTGATGGGGTTACTTTG AATACTGTGGCCTTTGAGAGGGCTGTTTCTGCTATTTCCAAGTTGAGGGAGAAGGGTGGTGGCCAGTTGAATGTGCCACC TGGTCTTTGGCTTACTGCACCATTTAATCTCACCAGTCATATGACTCTTTTTCTAGCTCAAGATGCTGTCATTCTTGGAA TTCAGGTTGGTTTTTCCTCATTCTGTTACTTATTTATGTTGTGTTTGTAAACATTTAGGATGAGTTTGGGTGAATAGCTT GTTTAATTGGGCTTATGTCAATAAGGCATAAGTGTTTATTTATAAGCTGATTTGAGAAAACTTATGGAAATAATCTGGAA ATAGCTTATATGTAAGCATAAGCTCTTATTCGTAAGCTAAATTGAACAATTTATAAAAATAAGCTGGAAACAACTTATAG ATATGTCATAAGCTGAAGATAAGCTCAAAAAGGCTCTTCCCATGGATTACATGATACCATCATTTCTGTCTTATAAGAAG TTCAAAGATAGAAATTTTACTTCCTAGTCTTTTTTCAATGGATTGAACTCGATTCAATAATAATAATGATAACGGTTATG AGGACTCAGGTCTTAGGGTACACTTGTACTCATTAGATTATGCTTTCTGCTGGATTTTATCATTGATCTCTTTGGTCCTG TATTTCTACTCGAAATCTATCTATCTTGATTTAATTGTAACTAATACTCTCATTATTAAAACTTGTATTTTCTATCTTAT GTGATGACTGACAGGATGAAAAGTATTGGCCATTGATGCCTGCATTGCCTTCATATGGGTATGGTAGGGAGCACCCTGGG CCTCGATATGGCAGTTTGATTCACGGTCAAAATCTTAGAGATGTTGTGATAACAGGTGAGGATTTTTCTTCCTTTTTCAG GACAAAGGTCTTTACTTAGTAAGTATCAAATTGTGTCAATGTTTGCTTTTGTTAGTCTTTATCTATTGATATAATCTGAT TGCTATTTTAAGGAAAATCAACAGATTGTCTCTTTATTCCTTGATTTTAGAGTCTCAAAAACAAAATAGTGTTATCCAAT GTTCTCTTTTAGTTGAGATACACAAATATTTTAAAGACTAAAGCTAGTGGAAACTGGAGAACAATATTTTATAACTTCTG CTTTTGGACAATAGATTCTCCCTCATATATGAATCCTCTTACCTACGAGTAGGTGTTCATTCATTAATGCAAACATTAGC CTACTTCAAGGGTGATATGCTTGAAAAGTATATTTTGTTGGTTAAATTTTCAACTTCGTGTATTTGATTGAATCAATAGT GTTTTGATACCAAATGGGAAACTGATAGAATCAGATTCAGGGCACCTATTAAGTAGTTATATCAGAGAAGGAATAAGATA GTTGTTGGTAATGGGCCTCAGCCCATTAACTGAGGGTTTGAGATTTGTATCACAATTGTAAAGGTAGTTAGTAGTTTTAA TTCTGTTAGAAGTTAGTTAAATGATATTCCTATTAGAGGAATCAATAATAGAAGTTCTTCTTCTATCTTTCTCTCTGCAT CTGAACTAGTTCTATCCGAAACCAGATTCTTTTGTATTTATTAACTGCCTTATGTACTTCCACCTTACACCTCATTATAG CGAAAAACTTGAGATAACATCAATATTTGTTTATTTTCATCAATAATCTTGAATCTAGCTTTGACTTTTTAGCCAATACT CCAAATTTCATATATTTATTTGCCTCGAGTATGTGAGTATTTCACGTTAGATGAACTAAATAGAGTAGCACAGTGAACTT GTAAGCATGGTGAACTAATTAGGAATGATCCATGATCAGGAATTCAGGATATACAAATTAAGCTACCACAGTACTGGTCT CTTTTACTTTTGTTTGTGCAATAATCTCTGAGTGTCTCTGATTCTGTATATTGTCATAATTGACAGGGCATAACGGTACC ATAAATGGACAGGGACAATCATGGTGGACAAAATATCGCGAGAAGCTTCTGAACCACACAAGAGGGCCACTTGTTCAAAT CATGTGGTCTAGTGACATTGTGATCGCAAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCA AGAATGTTACAATAAAAAATGTCACCATATTGGCTCCTGTATATCATGCTCCAAATACTGATGGCATAGATCCTGGCAAG TATCCTCTGCATAGTACTGTGATTTATTTCATATCTTAATATATGTATGATCTGCTGGTTGCTGAAAGTTACTAAATGAT CATGATGGCAAAGAGTGTTCTTGATGGCTTCTAAGAGAACAGTGGGTGAATTTTTATTAAGGTAGAAATGGGCTTAGTGA TTTATTTTTTTTCCATAAGCTTGGGTGAGGTCTCAGATGATTGGGAAATGTATCCTGAAGTTTTTTGGAATTGAGGTAGC TGGTTTCCTACATGTGACATGTGTTTGCTTGTTTGTGCACGAATGAGATATTCTTACTGTCATCCGTGTCACTCTCTGTT TATTGGTTATATCTTGTCCAACACATGTTCTTTGTTATCATGTTAAAATGTTATCTGGAACACTAGATAAAATCTGAGAG AATCCCTGTTTGATTGTTTTTTAATAAGATGTTCATCAGTGCTAGTTTTTTGTATGGGGAATTTTAACAATTCACAGTTT CTATGATATGAACAGATTCTTGTGAAGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATA AAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAAGAATATAATAATCCGAAACCTTGTGGTTCGCTC TAATGTCAGGTAAAGTGAATTCCTATCTCAAGCCACTCATTCTTATTATCTTCCTTTTTGGCATCTTATTGTTCTTTGAT CATGTGTGGGCACCGGCTGAAGCCGTGTATTGCTGCCTCTTCATGTGTTCGTCAGAAAATCTATTTAGTGACTATGAAAC ATATCATATGTTGGGCATTGGATTTTCTGAATCTGCATACTGTTATGAATCATGGGCATACATGCATTGTTCTGTCCATC ACCATAATTTCTCATAGTTCTCTATTCAGTTCCTTTGTAAATAATATAACTTGATATTTCCTTTATGTGAAATGCAACAG TGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCACAGTGGAGAACGTTCTTGTATGGGAATCTC GGCGTGCCATAAGGATCAAGACTGCACCTGGAAGAGGTGGATATGTGCGACAAATAACTTACCGGAATCTAACGTTCAAC AACGTCCGTGTTGGAATTGTTATCAAGACAAATTACAATGAACACCCTGATGCTGGATATGATCCCCTGGCATTTCCAGT ACTTAGTGACATAAGTTTCATCAATGTGCGTGGCCAGGGAGTTCGCGTGCCGGTACGTATTGAAGGTAGTAAAGAAATTT CAGTTAGAAATGTGACTTTCCAGGACATGAATGTTGGCATAACCTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTC GAAGGTCGGGTAATAGGTACTATCTTTCCTGCTCCCTGTGGGAACTTTGATCAATACAATGAACAAGGGGAGCTGGTTAA GCATGCTGTGTCACAGAATGTAACAGATATAGATTATGAAATTTGA
CDS sequence (LotjaGi6g1v0222700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTTTTTCTAGCTCAAGATGCTGTCATTCTTGGAATTCAGGATGAAAAGTATTGGCCATTGATGCCTGCATTGCC TTCATATGGGTATGGTAGGGAGCACCCTGGGCCTCGATATGGCAGTTTGATTCACGGTCAAAATCTTAGAGATGTTGTGA TAACAGGGCATAACGGTACCATAAATGGACAGGGACAATCATGGTGGACAAAATATCGCGAGAAGCTTCTGAACCACACA AGAGGGCCACTTGTTCAAATCATGTGGTCTAGTGACATTGTGATCGCAAATATTACTTTGCGTGACTCTCCTTTTTGGAC ACTTCATCCATATGACTGCAAGAATGTTACAATAAAAAATGTCACCATATTGGCTCCTGTATATCATGCTCCAAATACTG ATGGCATAGATCCTGATTCTTGTGAAGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATA AAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCCAAGAATATAATAATCCGAAACCTTGTGGTTCGCTC TAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCACAGTGGAGAACGTTCTTGTAT GGGAATCTCGGCGTGCCATAAGGATCAAGACTGCACCTGGAAGAGGTGGATATGTGCGACAAATAACTTACCGGAATCTA ACGTTCAACAACGTCCGTGTTGGAATTGTTATCAAGACAAATTACAATGAACACCCTGATGCTGGATATGATCCCCTGGC ATTTCCAGTACTTAGTGACATAAGTTTCATCAATGTGCGTGGCCAGGGAGTTCGCGTGCCGGTACGTATTGAAGGTAGTA AAGAAATTTCAGTTAGAAATGTGACTTTCCAGGACATGAATGTTGGCATAACCTACAAGAAGAAGCATATCTTCCAGTGT GCCTTTGTCGAAGGTCGGGTAATAGGTACTATCTTTCCTGCTCCCTGTGGGAACTTTGATCAATACAATGAACAAGGGGA GCTGGTTAAGCATGCTGTGTCACAGAATGTAACAGATATAGATTATGAAATTTGA
Protein sequence (LotjaGi6g1v0222700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLFLAQDAVILGIQDEKYWPLMPALPSYGYGREHPGPRYGSLIHGQNLRDVVITGHNGTINGQGQSWWTKYREKLLNHT RGPLVQIMWSSDIVIANITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAI KSGWDQYGIAYGKPSKNIIIRNLVVRSNVSAGISIGSEMSGGVSNVTVENVLVWESRRAIRIKTAPGRGGYVRQITYRNL TFNNVRVGIVIKTNYNEHPDAGYDPLAFPVLSDISFINVRGQGVRVPVRIEGSKEISVRNVTFQDMNVGITYKKKHIFQC AFVEGRVIGTIFPAPCGNFDQYNEQGELVKHAVSQNVTDIDYEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 2.9E-246 | – | |
| Gene3D | 1 | 317 | 317 | 6.7E-97 | ||
| PANTHER | 1 | 356 | 356 | 2.9E-246 | – | |
| SUPERFAMILY | 2 | 337 | 336 | 7.52E-90 | ||
| Pfam | 41 | 323 | 283 | 1.6E-49 | ||
| SMART | 113 | 140 | 28 | 37.0 | ||
| SMART | 141 | 162 | 22 | 160.0 | ||
| SMART | 175 | 197 | 23 | 6.7 | ||
| SMART | 203 | 224 | 22 | 36.0 | ||
| SMART | 232 | 253 | 22 | 210.0 | ||
| SMART | 266 | 288 | 23 | 6700.0 | ||
| SMART | 293 | 314 | 22 | 920.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0222700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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