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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0223900 |
| Transcript ID | LotjaGi6g1v0223900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Adipocyte plasma membrane-associated-like protein; TAIR: AT3G51420.1 strictosidine synthase-like 4; Swiss-Prot: sp|Q9SD07|SSL4_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 4; TrEMBL-Plants: tr|I3STH9|I3STH9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0223900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:52886062..52890476) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAATAGTAGTTTAGTTCTAATAAAAATGATAAGAGAGATTTATTATACATTGATTGACATTAACTCTCCGTGAGACA AACAAAGACCAATGAATACGTGTACTCGTGTAGTACATGAAATTGTAACATATGTTTGATGTAAAATTCATTAGCCTTGA GCTTTTAGAAAGTTAACAGTAACACACTCCTGATTGCAGAGCACAAGTTTCTTATCCATGGCTTCCAATCCGACTACTCA ACCTTTCTCTACTGGAAAATGTGTAACACTAAGCTCAAGCTTAGTTCTAGCAGCTTTAGTTGCTCTCACAGTACAAGTCT TCTACTTCTCACCCATAGATCCAGTTTTGCTTGACATAACCCCTGCACCTTCAACCAAAAACAACAAATTACAGGTAAAA AGTCACTGCATGTTATCTTAAATGGTCTTCCCTTGAACTCAATGTGGTTTCATGTTGAAACAAACGTGTTAAAGTCCTGC TTCTCTGATCCACGTTAAGCTTAACATGTCAAATTCTAGCTTCTTCTCGAGATACGTGAAATCAAGTTTGTGTTGAATCT GACACCAAAACAAGCATGCACCTAGCCATGTTTGGATAACAGGCACCTAGAAACTACACATAAGCTTCTCTTCTGAGAAT TGATTTTGACTTTAAACTTAATTGTAAATCACTTGTAAGAGAATTTATGAACATGCCGTTAGTATTTAATACTTTACTCT GTTGTATATGTTGTTTTCCTTCACAGAATGTCAGTAAGCTTGGAGAAGGACTTCTGAAACAACCAGAAGATGTTTGCTTT GATGAAGAGGGTACTCTCTATACAGCTACTCGAGATGGTTGGATTAAAAGACTGCGCAGGAATGGAAATTGGGAGAATTG GAAGCATATAGATAGTCATGCTTTGCTTGGGATAACAGCAGCAAAAGATGGGGGTCTCATTGTGTGTGATGCTAACAAGG TAAACATGAATTCTTCCATAGCACAAGCAAAAACAACAAAAGCCCCAAAATCCATGTCTCATGACTTATAGTATGTGTCT GAGCCACTCATTTGGAAATCTTTCTAGTCAGATTCAATTCTATAGCAAAACTGTTGTGTTTTAGAATTGATTCTGATTAA AGATAAGCTAATCCGAATATGAAAATAATGGCTACATTTCTAGCTTCTAGGACTTGGTCATTAACTTTACTAATTAAGAA AAAGCCAAAAGGATCCAAGAAAAAAAATGTGCTACTGCAAGACTAAAGATTATAATTATGATTTGCAGGGTTTGCTAAAG GTTACAGAAGAGGGTTTCAGTGTTCTCACTACACAAGTAAATGGTTCTCCAATGAGGTAAGCCCCAGACGAATAATTCAT GTGCAGATTGCTCTTGTGTTTTGTTTAGTTTTATTTTCTCTTTCAAGGCATCATTCATTACTATTACTATATCTTTAAGG GTCCCTATCTTTAATTTGAAATTTTGTTGAATGTGCCTTTTGGGGCATGCTAACAGCTCTGGTTTTGTTTTGTTATCTAT TTGCACCGGTATGTTCTCATACTACATAGATAAAAAATGAACTGCATTCTCTCAGAGTGTGTCGGATGGAGCTTTTGTGA TTGTAGAGGTTAATGTAATTTTTGAGGAATTTAAAATGCATTGTGCTAAATTCAAACACAGAATTTTAACACAACCGATT TAAAAATTAAAACTCCTACCATAATTACATTACCCTCTATAGATTGGTGGTATGTATGAGTTGATAGTGACTAGGTAGGA AGGATCAAAGATTGATGCTTTTTTTATTCTTCAAATGTTTGAGCATTTTATGATGCTAATCAATCTTGTGCCCCAAAATG CATTAATTGCACCCTTAATACAATATTAATTATTATGATTCTAAGTGAGGTTCACTTAAATTAGACAATTTCATTGCATC CGCACTAGCAATGAAGCCCATAGATTACAGTTATGAATATTTCTAATCGATTGAACCAGGTTCGCAGATGATGTGATAGA AGCATCAGATGGAGATATATATTTCAGTGATGCCAGTACCAAATTTGGTTTTGGTAACTGGTATCTGGAAATGCTAGAGG CCAGACCTCATGGACGAGTTCTCAAATACAACCCTGTATCAAATGAGACAACTATTGTCCTTGATAACTTGGCCTTTGCC AATGGTGTTGCTCTCTCTAAAGATCAAGATTATCTTGTGGTCTGCGAAACTTGGAAGTAAGTAAATATATATCTTGTCTT CCTTAGATTTTCTGGTCCTCTTTTGGTCAATTGAGTTTTTTTTGCCTTTGATGTCCCCACCTGTTCGGGAAACTATAGTT GTCTCTTCCAACAAATGATTTTCCTAGTGGTCGAGCCTGTGTTCTTGTTGGTTTCAATTGAGTCTCTTTTGGATATAGAA AGGACATCATTAATGTTGTTATGCATTGACTGCATTTTCTGTCATTTTACACTATTATTTTGTGAATCAGGTTCAGATGT ACGAGGCATTGGCTAAAAGGAGCAAACAAAGGCAAAACAGATATTTTCATAGAAAACCTCCCAGGTGCACCTGATAACAT TAATCTAGCTCCTGATGGCTCTTTCTGGATTGCTTTACTTCAGGTAATATTCATAATTCATATGAATTCTTAGTGAAAGA TAGTTTGCACATGAGCAAATGTTCTTGTACAACCATGTTGGCATGAAACAACTATTTAAACATAAAGAGAAGACATGTGA ATGGTATTTATTATATATCAATCGCGCCTCCTCTCGCAATAGTCCTTGTCGACCTAATTGGCTATTGCGTGGACAAAGCA ATTGCTCATATACCTTTATCTTTAAATTCAAAGGACTGTTAGACATAATTTGAAACACATTATCCTTTCAACACTTTAGG AGAAGACACATGAAAATTTTGTTTTATATTCTGTGTGACTGTTAGACATAATTTAAAACACATTATCCTTTCAACTGATA TTTTAATGTATCTTAAGCTTTTCAATTGATTGTACACAACAACTTAAAGGACTCTGAGTTTCAGACTAATTTGATTTTTT TTTTCTTTTTCCAATATTGATGCCAAAGATTACTTCTGAAGGACTGGGGTTTGTGCACACCTCCAAGGTATCCAAGCACG TGGTAGCTTCATTTCCATGGCTATTTAACTTGGTCAACGGTGCAAGAAAATCAGCAATGGTGGCGAATGTGGCAACAGAC GGCAAGATACTCAGAACGTTTGATGATAGTGAGGGGAAGGTGCTAAGTATGGTTACTTCAGCCGTGGAGTTTGAGGACCA TCTTTACTTAGGTAGTCTTAATACCAATTTTGTTGGAAAATTATCACTCCACAGTGCACAAAACCAGTGAAGTTCAACTC TAATTCAATAAGGGGTGTTTCTCTGCTTGAACCAAGCAATAAAAGCATCTTCTGATATGTATGATTCTGGTGAAGTCCAT CTAGGATATTGTCCCTATTGCGCAAATATGTTGTTCATTTTGTGTCTCTGCCTGCATCAAGCAAGAAAAACTTATTTTGG TATGTTTCATTTACTAATGTGTTCATTTTGAAACTAGGATCCTGCCATTGGCTGAACAAAAAAAAAGCATCAAGACTAAC TATCACCTGGAAATTGAAATTCTATTACCAACAGAAACAGAGAAATTCTCCCTCCCAAAGCAAGTTTCAAAAAATGAACT ATCATTGACTTTTCCATTTCGATACCTTTAACAAAGAATCCAAGAGAACAAACAAGCTTTCGATTAATAGCCGCTTAACG CTCATTACTTAGATAAGGATTTGCTCCAACAAAACATCAAAGGTGCTTTTAAATGCTCAAATGGAATTTTTACATGTTTT GATTTAAAAAAAAACTAAATGATTGAAAAACAAAGCAATTTATTTTACAAAAACCAAAGTTGACACTTGATACATATTGC AATTGAAACTTGAACTCATTAATAGTAGTTACAGGAGTCAACCTACTCTATCCTCATCTTCTTTTCTACTCTTGGTGAAG GCTTTTGTGTGTCCTTTACTTGGTCCCCTTTTGTTTTCCTACTATTTACGAACTCAGAGAAGGATGGTATTTGTGGCAAC TTTGCATTCACAGAACTTTCCATTGGCACACATTGGAAAGTTTCTGATCCAGCATTGCCTGAGGGTTCACTGCCAATATC TTCTTTTGTACAAGGATCTAAAGCAAGGGGTGTGAGGGGGTGTTCAGCTTCTGTCGTTGATGTGGAAGAACTAAGCGCTG ATGTGGAAGAACTAATCGCACAAAGTCGATCCATCAGATTGGTAGGACTTGTAGTTGTCAGCCACCTCACAGTACTTGCC ACTTGTGAATAATAGAATGATTTGCCAGCCTTGCCATATTTCTTGTAGCATTCATCCTCAAGAAATGATGCTGAGGTTTC TATTTCAATCCTGAA
CDS sequence (LotjaGi6g1v0223900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAATCCGACTACTCAACCTTTCTCTACTGGAAAATGTGTAACACTAAGCTCAAGCTTAGTTCTAGCAGCTTT AGTTGCTCTCACAGTACAAGTCTTCTACTTCTCACCCATAGATCCAGTTTTGCTTGACATAACCCCTGCACCTTCAACCA AAAACAACAAATTACAGAATGTCAGTAAGCTTGGAGAAGGACTTCTGAAACAACCAGAAGATGTTTGCTTTGATGAAGAG GGTACTCTCTATACAGCTACTCGAGATGGTTGGATTAAAAGACTGCGCAGGAATGGAAATTGGGAGAATTGGAAGCATAT AGATAGTCATGCTTTGCTTGGGATAACAGCAGCAAAAGATGGGGGTCTCATTGTGTGTGATGCTAACAAGGGTTTGCTAA AGGTTACAGAAGAGGGTTTCAGTGTTCTCACTACACAAGTAAATGGTTCTCCAATGAGGTTCGCAGATGATGTGATAGAA GCATCAGATGGAGATATATATTTCAGTGATGCCAGTACCAAATTTGGTTTTGGTAACTGGTATCTGGAAATGCTAGAGGC CAGACCTCATGGACGAGTTCTCAAATACAACCCTGTATCAAATGAGACAACTATTGTCCTTGATAACTTGGCCTTTGCCA ATGGTGTTGCTCTCTCTAAAGATCAAGATTATCTTGTGGTCTGCGAAACTTGGAAGTTCAGATGTACGAGGCATTGGCTA AAAGGAGCAAACAAAGGCAAAACAGATATTTTCATAGAAAACCTCCCAGGTGCACCTGATAACATTAATCTAGCTCCTGA TGGCTCTTTCTGGATTGCTTTACTTCAGATTACTTCTGAAGGACTGGGGTTTGTGCACACCTCCAAGGTATCCAAGCACG TGGTAGCTTCATTTCCATGGCTATTTAACTTGGTCAACGGTGCAAGAAAATCAGCAATGGTGGCGAATGTGGCAACAGAC GGCAAGATACTCAGAACGTTTGATGATAGTGAGGGGAAGGTGCTAAGTATGGTTACTTCAGCCGTGGAGTTTGAGGACCA TCTTTACTTAGGTAGTCTTAATACCAATTTTGTTGGAAAATTATCACTCCACAGTGCACAAAACCAGTGA
Protein sequence (LotjaGi6g1v0223900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNPTTQPFSTGKCVTLSSSLVLAALVALTVQVFYFSPIDPVLLDITPAPSTKNNKLQNVSKLGEGLLKQPEDVCFDEE GTLYTATRDGWIKRLRRNGNWENWKHIDSHALLGITAAKDGGLIVCDANKGLLKVTEEGFSVLTTQVNGSPMRFADDVIE ASDGDIYFSDASTKFGFGNWYLEMLEARPHGRVLKYNPVSNETTIVLDNLAFANGVALSKDQDYLVVCETWKFRCTRHWL KGANKGKTDIFIENLPGAPDNINLAPDGSFWIALLQITSEGLGFVHTSKVSKHVVASFPWLFNLVNGARKSAMVANVATD GKILRTFDDSEGKVLSMVTSAVEFEDHLYLGSLNTNFVGKLSLHSAQNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 27 | 13 | - | – | |
| PANTHER | 19 | 361 | 343 | 4.3E-165 | – | |
| PANTHER | 19 | 361 | 343 | 4.3E-165 | – | |
| Phobius | 28 | 31 | 4 | - | – | |
| Phobius | 32 | 369 | 338 | - | – | |
| SUPERFAMILY | 36 | 363 | 328 | 9.48E-47 | – | |
| Gene3D | 60 | 369 | 310 | 3.7E-73 | ||
| Pfam | 160 | 242 | 83 | 1.9E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Strictosidine synthase activity | Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. |
Expression pattern of LotjaGi6g1v0223900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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