Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0226200.1

Overview

Field Value
Gene ID LotjaGi6g1v0226200
Transcript ID LotjaGi6g1v0226200.1
Lotus japonicus genome version Gifu v1.2
Description Stress responsive A/B barrel domain protein; TAIR: AT2G31670.1 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q9SIP1|UP3_ARATH Stress-response A/B barrel domain-containing protein UP3; TrEMBL-Plants: tr|A0A072TGG6|A0A072TGG6_MEDTR Stress responsive A/B barrel domain protein; Found in the gene: LotjaGi6g1v0226200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:53226153..53228029) extracted from Lotus japonicus Gifu genome v1.2.

GTTTAATCAGCTTATGTTCATGTTGTTCTCTTATGTACAGATTGTTTTCGGTTCGGGTTTTTTAGTTTTTTGTGGGTTCG GTGCTCACATTTAGTTTTGGGTTTGAGTTCGGGTAACCAAAAACTCATGGGGTTTAGGTTTGGTTTTAACTTTTGCACTC ATATTGAGTTTGAGTGTTAAGTTCAGGTTCAGGTGTGAGAATTGTCAAACACGCACCCACGAGACTTGTTGTCAAACCCT ATGTATGAGCCACTAAAAGTTGATTATTAGACTTACTAATTATGGAATTGAACATCCTCAACGTAAAATTAACCAAAGAA CCCAGTTTAATAGATAAAAATTTCTTAAATTAAAATCGCTCATTTTACCCTTAAAGTCTTAAATCACACAATGGTGATAA ATAAACAACCAAAAGTGAAATTAACCATTTAAATAATTATCACATGTGGTAAGTGCTCCCACCCACTCAGCATCTCAGTC ACCCCTCTTTGTCACAGATTTGAATAGTTATCATCACAAATCTTCAATTAATCTTGGTGTTGAATGTTGATGCGTGAATC AACAATGATATATACACGCCTCATTTTTTAAACATTTCATTTGCACCTATTTTTGTTTTTATCTCTCTCCTCTTATCATC TATCACATTTCATATTTTCTCTCTCTTACTTTTTCTTTTCTTCTTATCTCTCTCATCATTCCACCTCTTTGACCTTGGAA CTATTCGATTCACTTTTTACAAGAAAATACCAAGTGCCTCAACTATAGTACTTATGCAAAACGTGCAAAAATAAGTGAAA ATAACATAATAACAGTGCTATAATAGAACCAAACACATCAACATCAATTAACCTTGTTTTTTTTTCTCTGACAACATATC ATGCAGACTCTGACAACTTGTCCCTCACTTTCTCGCCGCCCAAACACTCACCGGCGTTCAAACCCCACTTCTTCCAATGC CGGCCCTCCAGACAACGATCTTCCATCAAGATGTCGTCGGCGGCATCACACGCCGTTGAGCACATCGTTCTCATCAGGGT CAAAGACGATGTCGAGCCCTCTAAGGTCAACGACATACGCTCCCTCGCGACATTGGACCAGGTCCGCCACCTCACGGTGG GGCCAGTTCTCCGCAGCCACGCAACCACCACCAACGCCACGTCAGACCTCCGCTTCACCCACTTGCTCCACAGCCGCTAC GACTCAAAGGAGGATCTCGAAGCCTACAATGCGCACCCTCGCCACCTCGGCGCCGTCAGGGGCTCCCTCTTCCCTATCTG CGGCGACCTCATGGCCGTCGATTGGTTCGGCGACGAAGACGCGCTTCCCCCGCACCCGACGCCGGGGTCTGCCATCCGGG TGAGCTTCTTGAAACTCAAGGACGGCGCCGGCGGCGAAGTTAAGGACGAGGTTTTGGATGCTGTCCGAAAAATGAGGGGC GGTGGCGGGGCGATTAGCGGCTTCTCTTGCGGCGGAAACTTCTCGCCGGAGTGGGCGAAGGGTTTATCGATCGCTTCGCT GGCGGTTTTTCCGGGAAGGAAGGAATTGGAGGAAGTGGATCCGAATGAGTGGTTGGTTAAGGTTAGGGAGCATTTGGAAA GTGTGGTGGTGGTTGATTATGTGCTTCCTTTAGAGTAATTCAATTTTTTTGTCTAATGTAATCAAAATAAATGTATTTAA AAGTATTAAGCTAATAAACTTAGTTGGATTTGCTTATAAGTGAAAATATGTATGTTAACTTAGAAAACCTCTATTATGTC CCAGTATGATAGCTCAAGTGGTAGGAGTTGGTGACATATAAGTTGGATAGGGGGAGGTCCATGGATCGATTCCTCACGGG TGCAATTTATCTTTCCGATGTAACAAAAAAAAAGAAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0226200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGTCGGCGGCATCACACGCCGTTGAGCACATCGTTCTCATCAGGGTCAAAGACGATGTCGAGCCCTCTAAGGTCAA CGACATACGCTCCCTCGCGACATTGGACCAGGTCCGCCACCTCACGGTGGGGCCAGTTCTCCGCAGCCACGCAACCACCA CCAACGCCACGTCAGACCTCCGCTTCACCCACTTGCTCCACAGCCGCTACGACTCAAAGGAGGATCTCGAAGCCTACAAT GCGCACCCTCGCCACCTCGGCGCCGTCAGGGGCTCCCTCTTCCCTATCTGCGGCGACCTCATGGCCGTCGATTGGTTCGG CGACGAAGACGCGCTTCCCCCGCACCCGACGCCGGGGTCTGCCATCCGGGTGAGCTTCTTGAAACTCAAGGACGGCGCCG GCGGCGAAGTTAAGGACGAGGTTTTGGATGCTGTCCGAAAAATGAGGGGCGGTGGCGGGGCGATTAGCGGCTTCTCTTGC GGCGGAAACTTCTCGCCGGAGTGGGCGAAGGGTTTATCGATCGCTTCGCTGGCGGTTTTTCCGGGAAGGAAGGAATTGGA GGAAGTGGATCCGAATGAGTGGTTGGTTAAGGTTAGGGAGCATTTGGAAAGTGTGGTGGTGGTTGATTATGTGCTTCCTT TAGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0226200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSAASHAVEHIVLIRVKDDVEPSKVNDIRSLATLDQVRHLTVGPVLRSHATTTNATSDLRFTHLLHSRYDSKEDLEAYN AHPRHLGAVRGSLFPICGDLMAVDWFGDEDALPPHPTPGSAIRVSFLKLKDGAGGEVKDEVLDAVRKMRGGGGAISGFSC GGNFSPEWAKGLSIASLAVFPGRKELEEVDPNEWLVKVREHLESVVVVDYVLPLE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33178:SF3
2 212 211 1.4E-70 –
PANTHER
PTHR33178
2 212 211 1.4E-70 –
Gene3D
G3DSA:3.30.70.100
8 106 99 1.9E-14 –
SUPERFAMILY
SSF54909
8 106 99 1.01E-16
IPR011008
ProSiteProfiles
PS51502
9 105 97 18.154
IPR013097
Pfam
PF07876
9 105 97 3.1E-15
IPR013097
SMART
SM00886
9 107 99 5.2E-12
IPR013097
SMART
SM00886
121 212 92 0.11
IPR013097
ProSiteProfiles
PS51502
121 215 95 14.712
IPR013097
SUPERFAMILY
SSF54909
122 212 91 2.41E-6
IPR011008
Gene3D
G3DSA:3.30.70.100
122 213 92 6.0E-5 –
Pfam
PF07876
123 211 89 3.0E-7
IPR013097

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0226200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…