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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0226400 |
| Transcript ID | LotjaGi6g1v0226400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein ELF4-LIKE 4; TAIR: AT1G17455.1 ELF4-like 4; Swiss-Prot: sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4; TrEMBL-Plants: tr|I3STN0|I3STN0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53253573..53256255) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGAGGGTCCTAACGTGAGCGTGACTGTCAAAATCTACATGTTTTCAGTTCCTCTCTCTCTCTCTCGTCTGTCCTGTT CTCAATCACAGAAGAATTCACAGGACAGGTCTGGAGATTCCATTTCCACTCTCACCTCGGTTCTCCCTCGTCTCCATTTT TTCATTCTCACTCTTCTCCACAAAATATAATGTTCCCACTTGAAAAGGTACGATTTTTAATTCATATATATATATAATAT ACACACATACACCATAATATTATTGTGAATAAACTATTCGATAAAATGTTTCTTTGAATCTTTCTATATTGCAAAAAAGA GAATTTTGTTTGCTGGCACTTGTTTCTTAACCTCTTTTTAGCTCATTCGTTGATTCTGCGAGCACCATGCTTTTCTTGTT TCAGTGCTGTTTCCTTGTTCTATCCATGTCGAATAAAATATTACCAAAAGGATCTATACAATTTGAGATACGTTGAATCG TCAAACTCCAATGGTTTTCCTTTTTCTGTTTGCATTTTTTTCTTCTACAAATCTCTGTTTCTCATAATTATACTTAGTTT TATACTTTTATTCAACGTATAGTTCTCAGAATTTGGTCAATAAGCATTTTGGACGGTTACTTCTTTTCATTTTTTGCTTT CCGTAATTTTGAGTGGAAAAGGTTAATGATTGTTGTCCTTCACTTCATAGCCTCATTTTCTTCTCTGCATCATCTCTTAG GATAAAAAACTTCAGTACAATGTGTAGATAGTTGAACTTCTAAAGTATTTAGTAGAAAATTTAATTTTTGTGTAGTGTAT ATGAAAACAATTTGTTAGGAGATTTCTCTCATTTAATGTGATTTAAAGACTCAAAAAAATTGTCTCATTGCTGTCGGTAA TGAGATATTTATTTAATGGAAAAACCTTTTTTTGGGGATAATTTGAGATTCTTCTATGGAACTCTGTGGTTTTAGGTAGC TATTTCCTCAGTACAATAAAAAAGTTTCCTTTTTATGGAAACGGGATCTGCTTTTCCTAACTTATAAAGAATAAAAAAGA ATTATGATTATAATAATGATAATAACAATAATAGTAACAATAATAATTCATTAATTCTAATCCATGCTTCTAGTCTGATT CCTCTGAAAAAGGAACTGATGGAGGTCATGATTTCTACTTCTGAGCTTGTCTCATCTGCCCAAAATGCCTTAAACAATTC CAAATCTGGTCACGTTTTGTCTCTCTGTTGTGGTTAGTGCAGGCCGGTACAGATAAGAGGATATGATTATGGATAAATTA TAAAAGAAATGAAAAAAAAACAACAGTTAACTACAGTAGTATACAGTACTTTTCAACTGATTTGATTTTATTAGCTTAAA CTGAGGTATTACAAGTTATTATGTGAATGTTGCCGTGTTAAATATTTAAATGGTGTTAGTCTTACTGTTTATAGTGATTA TGTTTATAGTGATTATGTCCGGCTTGAAAAGATATAAGTGGAGGAAACCTCGCAGATCAGCTAACATGAAATTGTTATAG TTAAAGAAGATATTTTAGATTCGACTCTTGTAAATGCGTTTTTCTTAAATAATTGATAGGTAGACTAGTAAAGTTTTGCT GTTTATAATCATCTTAGTCGGCTTAAATATGATTATCTGAAGGATACCTTAAAGAAGTATATATTAGTATAACTGCTTTC TCATCCTTTGTTATCTCTCTTCTTCATCTCAACTCTCATCTCTTTCTTTCTTTCTTTCTTTCTTTGTGGTCATGATGCAG GGCTGGTTCTGACTTGAATTGGCTTCTTCTGACTCCAAAAAAAAGAAAAGGGAGAAGAATTAATGGAGAATGACACATTC TCTGGTGTTGGACACGGTATACTACAGCAGATTGATGGCAAGGTGTTGCATACGTTTCAGAAGAGCTTTGTTCAAGTACA GAACATCTTGGATCAGAACAGGGTTCTCATCAATGAGATAAACCAGAATCATGAGTCTAAGGTCCCTGACAACCTTAACA GGAATGTGGGACTTATTAAAGAGCTCAACAACAACATAAGAAGAGTGGTTGACTTGTATGCAGATCTTTCAAGTTCCTTC ACGAAATCCATTGATGTTAATTCTGAGGGGGATTCAAGTGGTGCTGTGAAATCAGATGGGAAAGCTTGCCACAAGCGAAA CAGGCCTACATAGAGAGTTTCTTTCTTTGTCTTCTTAATTCTTTTGCTTGGTGGTGGAGAATCACAACTTCACAACTTGT ATTTGGATCAGCTTCTCACTCGTCAAAATCAGTTCTAAACCACAGAAACTACTCACCGAAGCTTTTCTCCAGAATTGTTT TGATTTAAAAAATCAATTGTAGAAGAGTTTCCCAGCATGCGTAGAACAAGATTAGATTCTGTAACTTAAGCTCTCTCTTG TATCTCATGTCTCTCTTTAGTTCATCACTTACTTCTTATATGTCCAATGAAAAAAAAATATTGATTTTGTACCCGGATTC CTCTCATTGTAACCTTGTAATTTTGGATCTAATAAAAGTCAAGCATGTTCAAAAGGAAAATCAGGCTTTTTTAAGTTTTA GTTTGGTTTTACCCTTAGATTATAATGTGATGGAAAGTAATTTTCAGATGACCCTTTTCTCTCTTTTATCAGCATTTTTC TGATTTCTTTGATCATTGATGAGCTAGATTGAATGAGGTAAAG
CDS sequence (LotjaGi6g1v0226400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATGACACATTCTCTGGTGTTGGACACGGTATACTACAGCAGATTGATGGCAAGGTGTTGCATACGTTTCAGAA GAGCTTTGTTCAAGTACAGAACATCTTGGATCAGAACAGGGTTCTCATCAATGAGATAAACCAGAATCATGAGTCTAAGG TCCCTGACAACCTTAACAGGAATGTGGGACTTATTAAAGAGCTCAACAACAACATAAGAAGAGTGGTTGACTTGTATGCA GATCTTTCAAGTTCCTTCACGAAATCCATTGATGTTAATTCTGAGGGGGATTCAAGTGGTGCTGTGAAATCAGATGGGAA AGCTTGCCACAAGCGAAACAGGCCTACATAG
Protein sequence (LotjaGi6g1v0226400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDTFSGVGHGILQQIDGKVLHTFQKSFVQVQNILDQNRVLINEINQNHESKVPDNLNRNVGLIKELNNNIRRVVDLYA DLSSSFTKSIDVNSEGDSSGAVKSDGKACHKRNRPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 115 | 101 | 4.7E-55 | – | |
| PANTHER | 15 | 115 | 101 | 4.7E-55 | ||
| Pfam | 16 | 97 | 82 | 1.7E-38 | ||
| MobiDBLite | 91 | 116 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Positive regulation of circadian rhythm | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. |
Expression pattern of LotjaGi6g1v0226400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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