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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0226500 |
| Transcript ID | LotjaGi6g1v0226500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication protein A 70 kDa DNA-binding subunit; TAIR: AT2G06510.1 replication protein A 1A; Swiss-Prot: sp|Q9SKI4|RFA1A_ARATH Replication protein A 70 kDa DNA-binding subunit A; TrEMBL-Plants: tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit; Found in the gene: LotjaGi6g1v0226500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53262370..53266467) extracted from Lotus japonicus Gifu genome v1.2.
GAACTAACCCTTAATTTAAACCATAGTATTAAATATTTAAATGAACCATTTCATAGGTGCAAATGATAATTATGATTTTT GCACAGAATCAAAATTATTAACCCGTTTGTTCCACCGACCCGCCAACCGTTCCGGTTTATCTATCGGTTCAGCCCGCGAA ACCGTTCTCGAATTTTCGCTCTCTTTTTCTCTTCATTCCAGAGTTTGCTTCGGAATCGAGAACCAGAAGCACGATGTCGG TGAATCTGACGGCGAACGCGATTCCGACGATTATCGGCGGCGACGTGAACGCGAAGCCGCTAGTCCAGGTTCTCGACGTT GCCTTAGTCTCCGGCGGCAACAACTCTCAGCAGCAGCAGAGGTACCGTGTTGTGCTCTCTGACGCCGTTTCGTCTCACCA AGCCATGCTCGCCGCTCAGCTCAATGACCATGTCCGAAACGGCCGAGTGAAGAAGGGTTCCGTCGTTCAGCTTATCGATT ATATATGCTCTACTCTCCAGAATCGCAAGTATCTCTCTCTCCCTCTCCTCTTTTAGAAACCTAATTTTTCATTCCAGCAA TTTCTGCAATTTCTCGGTTGAAATTCAATTTACTGAAGCAAATATTTAAACCTAGAATATATATTTTTTGATTCCTAATG ATTCAGCAAAATGGGCATAGTTTTTAGGGAAAAAGTGAATTCTTGTAGCTTCATTGGAAGATAACATGTTTTTTAGTCAA GTGAAGTGTTATGTGAAGATGGGTAGAGGTAGGCAAGATAGAAATGTTAATAAATGCAACCTCATAGTCAATAATATCCC TCAAATTTTTGTTTTTGACCGAGCGCAATAGCATCGTGTGATACAGGTCCCTGAAAGATAACTCAAGTGGTAAGAGCTAG GGACACAAGGGTTGGGTGGGATGAAGGGTGAAGGGTGAAGGCTTCGAACCCTGGGGAGGACTAATTTTCTAACATTAGTG ACAACTAACATTTGCCTATAAAAAAAAAGCACCGTGTGATACAGATAGCCGACCTCACTTAGTGGAATAAGACTTTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTATCCTTATTGTAGAAATGCTAAATCTGAGCATATAGATGTTAGAGTAAAAAACT TGTTGCAAATGGAATGCAGCATCTTCAACTTCAGGTTTTTCATGTGAAACTAATTTAGGTTATTTTGTGTTTGTTTGTCA TGGTACAGGATTATTGTGGTGCTTAACATGGAAACTATAATTCTGGATTGCGAGATCATTGGGAACCCGAAGTCATTTAT GAATTCTGATTTACCAATTTTGAGAAATGCTGCGGAGAATTTGCCCAGGAGTAGTGGTAATAATTTGGCTGCTAAGAATG CAAGTCATAATGTGCAGAATTTCAGACCAACGGTTCAACCGGCATACCAACCACCTCCTGTTTACAAAGGTCGTGGTGCG ATTGTGAAAAATGAGGCACCGGCACGCGTCATTCCTATTGCTGCTTTAAATCCTTATCAAGGTAGGTGGGCTATCAAGGC AAGGGTAACAGCTAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGAGATGGGAAAGTCTTCTCGTTTGATCTTCTTG ATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATTCTGTAGTTGATCGCTTCTATGATTCAATTGAGGCTGGTAAA GTTTACTTGATATCCAGAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTT GGATTCAAATTCAACTGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAGTTCTCCTTCAGGCCGATAA GTGACATTGAAAATACTGACAGTAACTCCATCCTTGATGTTATCGGGGTAGTGACTTCTGTGAATCCTTCAGTTCCCATC TTGAGGAAGAATGGAATGGAAACTCAGAGAAGAGTTTTGAATCTAAAAGATAGTTCAGGCAGGAGTGTTGAGTTAACACT TTGGGGTGAATTCTGCAATAGGGAAGGACAAAGGCTTCAAGAGATGGTAGATGCTGGGGTTTTCCCCATTTTGGCAGTCA AAGCTGGGAAGGTTAGTGACTTCAGTGGCAAGTCTATTGGTTCTATTTCTACTACACAGCTTTTCATTAATCCAGATTTC CCTGAGGCTCATAGCTTAAGAGATTGGTTTGATCAAGTTGGAAAAGATTCTGCTTCTTTATCAATTTCTAAGGACTTCAT TCCTGGAGGACCAAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAAGATGAAGGTCTGGGACGGTCAGACAAGCCAG ACTGGATAACAGTCAGGGCGACCATATCATTCATGAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGA GATCGACAGTGCAGTAAGAAAGTAACTAGGTCAGGGAACATGAGTTGGCAATGTGATAGATGCAACCAAGAGTTTGAGGA GTGTGACTACCGGTACCTTCTCCAAGCTCAAATCCTGGATCACACAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAG GGGAAGAGATTATGGGGTGCTCCGCAAAGGAGTTGTACTTCTTGAAAAATGAAGAGCAGGATGACGACAGGTTTGGAGAA ATAATCAAGAGTAAACTCTTCAACCATTTTGTATTCAAGCTGAAAATAAAAGAGGAATTATATGGTGACGAACAGAAGGT GAAGATTACAGTGGTCAAGGCAGATCAGGTGAATTATTCTTCAGAGAGTAGATACATGCTTGATTTGATTTCCAAATTTT GTAGGCAGTGATTGTAATGTGGTTCAAGTGTAATTTCATGCAACGATCATGCCTATTAGTATTAGTTTACAAGCTTTGCA TAGAAACAGTCATTAGCTTTTCCATTTCTTTTTTGGTGTAGTATTCTTTCATATCACACAGGAGGATCTATAACACTTTT AAGCGAGCGTTTACATAGGATATTTCGTTCCTCCCAGTGGTAACTAATATTTCTGTATGATCACACACTATTCTCAATTT ATCTACTATTATTCTGCTTACTCTCTGATTCGTTCTGATTTTTTGTCAGCTATGTTGATATTTCATATTCCATGAATTTC CATAGTGTTGGATTCAAAATGTAATCTATCATAGGTCTGCTTATTAATTTTGTTCCCGTAGAGCAGAAACATGTAACTAA TCTATTTCTGTGATGTGCCAAAACGAAGATAACATTTTAAGAATTGAAAACTTGCTCTCAAGTGGGGTTATTAGTCACAT ATTACTGGACACAACAGAAAGTTCACTTCATTTCTGAAGAACATTACAGATATGTATCACAATAAGAAAAAAAAAAATCA AGGCCAGCCCTGCAGAATTTCATCAGCCTCGCTTGACGGGATCGAAATTGGAAACACCAACCACAGCACCAATAATGACT ACAAGCACAACTCCACCAGCCGCGATGCTGAGCAAGAAGTTCTTGAGAGACGGTGAAACGGCAGCTTCAGCCACATCAGG AACCATCATTGAGGCGGTCATTGCAGCTGCTGTGAGCCCTGTCACAACTTTCTCCTTCATGGAGGCCCTGACTTGAAACC TTCCACTTGATTTTGATGCTGCTGCAGCCCTTGAGGACCGAAGATGCATTGGCTTGAAGAATGCCTCAGAGGTTGGCACC ACCCTCTGCTGGCTGGCGTGAGTTAGTGGCATTGCCATTGAAACTGCAGAAGTGGAAGCCATCCCTTTTCTATGGGTTAT TTCTTCTTCCCCTGCTAGTTTATTTGCTTGAAGCTTTTCTCTGAATAATTAGGAAATGAGTTTGGTGTGTTGTTTTGTGG GAAACGTGGTGGATGCAGAGTGGAATGAGAGGTGGAAAATTTAGGCATATTACATCTATCTGATGTGGTAGCTTCCCCAT TGGAAATGGATGGATAAGGTTATCTCATGGGTCCAGTCATCACTCATTGTGCTGAAATTTTAGTCTGAGGTCCTCAATTG GGTCATTATTTTCGGTAGTCTTTTGTTTTTCCTATTCACTTTATAGGATAAAGCAAGTAATCACAACTATTGATTGAGTT GCTTTAATAACTTTTGAA
CDS sequence (LotjaGi6g1v0226500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGTGAATCTGACGGCGAACGCGATTCCGACGATTATCGGCGGCGACGTGAACGCGAAGCCGCTAGTCCAGGTTCT CGACGTTGCCTTAGTCTCCGGCGGCAACAACTCTCAGCAGCAGCAGAGGTACCGTGTTGTGCTCTCTGACGCCGTTTCGT CTCACCAAGCCATGCTCGCCGCTCAGCTCAATGACCATGTCCGAAACGGCCGAGTGAAGAAGGGTTCCGTCGTTCAGCTT ATCGATTATATATGCTCTACTCTCCAGAATCGCAAGATTATTGTGGTGCTTAACATGGAAACTATAATTCTGGATTGCGA GATCATTGGGAACCCGAAGTCATTTATGAATTCTGATTTACCAATTTTGAGAAATGCTGCGGAGAATTTGCCCAGGAGTA GTGGTAATAATTTGGCTGCTAAGAATGCAAGTCATAATGTGCAGAATTTCAGACCAACGGTTCAACCGGCATACCAACCA CCTCCTGTTTACAAAGGTCGTGGTGCGATTGTGAAAAATGAGGCACCGGCACGCGTCATTCCTATTGCTGCTTTAAATCC TTATCAAGGTAGGTGGGCTATCAAGGCAAGGGTAACAGCTAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGAGATG GGAAAGTCTTCTCGTTTGATCTTCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATTCTGTAGTTGATCGC TTCTATGATTCAATTGAGGCTGGTAAAGTTTACTTGATATCCAGAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCA TTTGAAGAATGAATGGGAAATTTTTTTGGATTCAAATTCAACTGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTA GACAGCAGTTCTCCTTCAGGCCGATAAGTGACATTGAAAATACTGACAGTAACTCCATCCTTGATGTTATCGGGGTAGTG ACTTCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAGTTTTGAATCTAAAAGATAG TTCAGGCAGGAGTGTTGAGTTAACACTTTGGGGTGAATTCTGCAATAGGGAAGGACAAAGGCTTCAAGAGATGGTAGATG CTGGGGTTTTCCCCATTTTGGCAGTCAAAGCTGGGAAGGTTAGTGACTTCAGTGGCAAGTCTATTGGTTCTATTTCTACT ACACAGCTTTTCATTAATCCAGATTTCCCTGAGGCTCATAGCTTAAGAGATTGGTTTGATCAAGTTGGAAAAGATTCTGC TTCTTTATCAATTTCTAAGGACTTCATTCCTGGAGGACCAAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAAGATG AAGGTCTGGGACGGTCAGACAAGCCAGACTGGATAACAGTCAGGGCGACCATATCATTCATGAAGACTGATACATTTTGT TACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAGTAAGAAAGTAACTAGGTCAGGGAACATGAGTTGGCAATG TGATAGATGCAACCAAGAGTTTGAGGAGTGTGACTACCGGTACCTTCTCCAAGCTCAAATCCTGGATCACACAGGATTAA CTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGGGGTGCTCCGCAAAGGAGTTGTACTTCTTGAAAAATGAA GAGCAGGATGACGACAGGTTTGGAGAAATAATCAAGAGTAAACTCTTCAACCATTTTGTATTCAAGCTGAAAATAAAAGA GGAATTATATGGTGACGAACAGAAGGTGAAGATTACAGTGGTCAAGGCAGATCAGGTGAATTATTCTTCAGAGAGTAGAT ACATGCTTGATTTGATTTCCAAATTTTGTAGGCAGTGA
Protein sequence (LotjaGi6g1v0226500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLAAQLNDHVRNGRVKKGSVVQL IDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDLPILRNAAENLPRSSGNNLAAKNASHNVQNFRPTVQPAYQP PPVYKGRGAIVKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDR FYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFRPISDIENTDSNSILDVIGVV TSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEFCNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSIST TQLFINPDFPEAHSLRDWFDQVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTFC YTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQEAGEEIMGCSAKELYFLKNE EQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVKITVVKADQVNYSSESRYMLDLISKFCRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 111 | 111 | 2.26E-26 | ||
| Gene3D | 3 | 117 | 115 | 1.8E-28 | – | |
| TIGRFAM | 4 | 621 | 618 | 6.0E-192 | ||
| Pfam | 5 | 102 | 98 | 1.6E-27 | ||
| CDD | 9 | 103 | 95 | 2.27639E-31 | ||
| PANTHER | 15 | 115 | 101 | 1.5E-234 | – | |
| PANTHER | 15 | 115 | 101 | 1.5E-234 | – | |
| PANTHER | 151 | 621 | 471 | 1.5E-234 | – | |
| PANTHER | 151 | 621 | 471 | 1.5E-234 | – | |
| Gene3D | 177 | 285 | 109 | 8.0E-38 | – | |
| SUPERFAMILY | 179 | 291 | 113 | 6.0E-29 | ||
| CDD | 181 | 284 | 104 | 1.09121E-51 | – | |
| Pfam | 193 | 275 | 83 | 3.9E-10 | ||
| Gene3D | 290 | 429 | 140 | 2.1E-37 | – | |
| SUPERFAMILY | 296 | 423 | 128 | 1.78E-28 | ||
| Pfam | 302 | 406 | 105 | 7.6E-29 | ||
| CDD | 313 | 420 | 108 | 7.27813E-34 | – | |
| Gene3D | 436 | 623 | 188 | 1.7E-65 | – | |
| SUPERFAMILY | 445 | 622 | 178 | 1.44E-54 | ||
| CDD | 448 | 621 | 174 | 4.96472E-65 | ||
| Pfam | 464 | 614 | 151 | 1.6E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi6g1v0226500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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