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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0226900 |
Transcript ID | LotjaGi6g1v0226900.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vacuolar protein sorting-associated protein 2 like 1; TAIR: AT2G06530.2 SNF7 family protein; Swiss-Prot: sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1; TrEMBL-Plants: tr|I3SFU1|I3SFU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53279872..53282173) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGCTTCTGGTGATATGCATGAATTACAAAAAAAAGTATGGTCTTTTTTTTTTCAATTTCAAGTTTTCAACCATACTT TGCAGCTATGAGAATCATAATTTTAAGGAACTAGTACTAACTGGCTTGTGTAGTTGATTATTTGATTGAAATTGTGGTAT TATCTCTGTGAGGATTGTTTGTTTCCTGCTTGCATTGACAAATTTTTTTGATTGATTTGGTTTGATATGCTTTTTGCAAA TTGAAACAATATGTATTGGTTTGTAAGGCTATGACTGTGAATTTTGTGACTTTCAGAGCTACTGCGGGAAAATAAGAGAA TGTTGGACAAATCGATTAGAGAAATTGAGCGCGAGAGGCAAGGTTTACAAGCACAAGAGAAGAAATTGATTTTGGAGATA AAGAAAAGTGCCAAACAAGGCCAAATGGTATTGTGTCTCTGTCTTGACTGTGTTATTTACCTCTTATAGTTGGTTTTTGG TTTTAGCATGTTGACTGTTGAACATGGTAGTTAAGCTGTTTTTTTTATCGGAGATTTATGCCACCCCACCTCAGCTACTT TGGTATAGGTGTGTGGTTGGCATTTGTAGCTCTTTTTTCTTTTGGAAAAACATGGTAATGTGTTGGCTGCTCAGATGATA TTCTTACTATTTTCATATAATTTGCTCTGTATCCTACCGTTGATACTTGTGGTTGGGGAGATTTTTCTGCTTAATCTCAT CATTTATAATAACCAAGATATATAAATTCACATTAGTTTTAGGGATTAGACTTGTTGCTGCACTTGGCGCAATCAGAATG ATTCCCTGCCTGTTTTCCTTATGGTTCTGTTACTGTTGCACTGTCTCATAACTAATTAGATTCTTAGCTCTCCTATCTCC TTAAAAATAAAGCAATAGACCTGAATTAAATTGCATGCAACAAATCAGAAGCATCTAATTTTTCCTTTCCTGGATATCTT TGACTCTTGAATTCCATTCATGTTTCTGATATTCTTTGCAATGTCAGTTGCAATACATGGTTTAGGAAACATTGGATTTA TGTTATTATGTACTAAATAGGTGAATAGGTGAATCAAGTTATGGTGTCTCTCATTCTCTACCAAACTAAATAAATTTGTA ATGTTTATTTTTCGATTATTTAAACAACTGATAAGATAATAATCAGGACTCTCATTTTCTTAAACTCCACTACATCCTGT TTAGTGGTATTGAGAAGTAGCATGACATTAAAATGTGAACTTTCAACTGATGTGGTTTTGGCAAGATAGTGTGACTGGCT TGCACATGATGAATGTAGTTTTTCTTCAACACTTTGACTAGTGTGTTTAATTTTTTTATACCAAAACTAATTTTATTTGC GAGGCTCTGTTTATGTGTATTTTATCCTCTGTCTATGGTTAACTTTTGATTTATTTTTTAAGGAGGGTTTTATGTTTCAC CAATACCATTTTTGTGTTTCATGTAATGTTGTCCAGGGAGCTGTTAGAGTTATGGCAAAAGATCTTGTTAGAACAAGGCA TCAGGTTGAAAAGTTTTATAAGCTAAAATCGCAGCTCCAAGGTGTATCTCTCAGAATTCAGGTATGTGGTTGTGTTGATT GTATCTATTGTTTTCAATTTGTAATAGCACATATTGTCATTACAGCATAGTAGTTCAGTCCTAAGGCTCATAGTATTTTG TGTTTCTTATAATTTGATTAACTGGCTAATACCTTCAAAGGTTTGATCAAAAGTCAAAACCCACTCTTTCACTTACATGA GTACTAAAAGCTAGTTGTTTTGTACTACAATTGTGCAGACATTGAAGTCAACACAAGCAATGGGTGAGGCGATGAAAGGG GTGACGAAGGCGATGGGGCAAATGAATAGGCAAATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACA GAATGAGAAGATGGAATTGACGACTGAGGTGATGGGAGATGCAATAGATGATGCTTTGGAAGGGGATGAGGAAGAAGAGG AAACAGACGATCTAGTGAACCAGGTTCTTGATGAGATTGGAATTAATGTAAACCAAGAGGTATACTCATTACTTATTTCC CATTGAACATTTGTTTTTCACATGAAAATAAATGATTTGAATGACTATAGTAATTAATGCATAACTTGTCATTTTGATGT ACAGCTTTTGAATGCACCATCATCTGCTGTTGCTGCTCCAGCTGCAAGTACTAAGGTTCCTCAAGTTGAAACTGCAGCGA CTGATGATGGCGGGATAGATAGTGATTTACAGGCAAGGTTAGACAACTTGAGAAAAATGTAG
CDS sequence (LotjaGi6g1v0226900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGACAAATCGATTAGAGAAATTGAGCGCGAGAGGCAAGGTTTACAAGCACAAGAGAAGAAATTGATTTTGGAGAT AAAGAAAAGTGCCAAACAAGGCCAAATGGGAGCTGTTAGAGTTATGGCAAAAGATCTTGTTAGAACAAGGCATCAGGTTG AAAAGTTTTATAAGCTAAAATCGCAGCTCCAAGGTGTATCTCTCAGAATTCAGACATTGAAGTCAACACAAGCAATGGGT GAGGCGATGAAAGGGGTGACGAAGGCGATGGGGCAAATGAATAGGCAAATGAACTTGCCATCTTTGCAGAAAATCATGCA AGAATTTGAGAGACAGAATGAGAAGATGGAATTGACGACTGAGGTGATGGGAGATGCAATAGATGATGCTTTGGAAGGGG ATGAGGAAGAAGAGGAAACAGACGATCTAGTGAACCAGGTTCTTGATGAGATTGGAATTAATGTAAACCAAGAGCTTTTG AATGCACCATCATCTGCTGTTGCTGCTCCAGCTGCAAGTACTAAGGTTCCTCAAGTTGAAACTGCAGCGACTGATGATGG CGGGATAGATAGTGATTTACAGGCAAGGTTAGACAACTTGAGAAAAATGTAG
Protein sequence (LotjaGi6g1v0226900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMG EAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTTEVMGDAIDDALEGDEEEEETDDLVNQVLDEIGINVNQELL NAPSSAVAAPAASTKVPQVETAATDDGGIDSDLQARLDNLRKM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 202 | 202 | 1.3E-121 | – | |
PANTHER | 1 | 202 | 202 | 1.3E-121 | – | |
Coils | 2 | 26 | 25 | - | – | |
Pfam | 2 | 166 | 165 | 2.4E-43 | ||
Coils | 99 | 119 | 21 | - | – | |
MobiDBLite | 171 | 191 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi6g1v0226900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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