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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0230900 |
| Transcript ID | LotjaGi6g1v0230900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G56960.2 basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q9LTS4|BH041_ARATH Putative transcription factor bHLH041; TrEMBL-Plants: tr|K7MBY3|K7MBY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0230900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53951366..53956121) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTACTCATAAAACCATTCCTCTCTTTCTACATCTCTCTCTCTCTCTCTTTCTCCACATGTTCATGTACACATTCAGT ACTTGTTACTACTACTTTTCAAGCTTATAACTTGCCAGGAGCAACAAGACAATTTTTTCTGTTCCCTCATTTCCCTTATG AAGGTGGGGCTACTTTTTTTTTTTTAATTTGAGTCATCTTTTAGTTATTTTTCTCCTATTTCCTTGAGTTTTCACACCTT GTTATAATTTTCTTCATAGTGGGGATCACCCACTTCAGTACTTTTCAAAACTCTTCCCTTTAACATCTTGAACTTTCAAT AGCTAACTATTTTATTAGCTAAATCAATTGTCTACCTTGCCAGTAGCCAGAAACTAGAAGCTGAATCTTCCATCATATAC AGTCTTTCTTGCTTTATATTGTCAATGAAACCAAGCCATTCCCTCTCAGATAGTAGTAGATTGTGTTTCATAGGAATAAA TTCCAATGGCATATAGACTTAGCAGAGGAAAAAGTATTACTAGAGACATGATACTATCATACATACACACTTTGATCTCA TAATGATGCAAAAGCAAAAACATTAGCATCAAGTTCCAATTAAGCACCCCATGGAAGGTGTCTTCTCCCTCCCTGCAGCC GCCAGAATTGATTTCATCCACTCTCTGGTGCAGTCTTTTGGCGGCTCATACATTTGCCTATGGTCACATGATGCCATGTC ACCAAAGTATATATATTTATGCATACACCTACATTATTAATAGTATTTTCTAATGTAACATGCTTTCTTATAAGGTATTG TGCTTGCAATAACTTGAGCTGGTTTTGTTTTTGTGGCATAGTCGTTTGTCCTTCTTGGATGGTTTCTACAATGTAAGCAA CATTAGCCAACCAAGCTCTTCCCTTGGTACTCTGGCACCACAGCTTTTCAACCAGTTCCAGAGTTTAACATTTGATGTCA ATGATGAGTAAGGCCAGCTCTCATATTTCACTTAGTTTAATGTAAATTGAGTGTGATACAATAAATTCTTCTTCTTATTC TGTAAATTAAATACATTTGTTTGTTTGTTTTATTCAGCCGTGTCCCTGGACTAGCTTTTAGGAATCAGTGGCCCTACCTA GAGCTGCAACAATTAGAACTTCTGAGACTGGCATCCACAGAGTTACAAGCACAATTCTATCAAGTAATTACTGTTCTAAT GCAAAAGAACTTATTACTTGAAATGCCATATTTTTATGTTGCTAAGGTAACTAATTTGTTTTATATTTTTACACAGGAAG CAAGGATCAAGGTTTGTTTGCTTTTGAAGAAACTTAAAATCCTTTATATATGTTTCCTCATGAAACAGGAATCTTACTAA GTCATTGCTTTCACCTTATTCTTCTCAGACTGCTGTTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAA ACATGTCTCAAGTAAGAAACTATATCTATACTATATAATGTTTTTTTCTGTGATCATAGTAATCCTCCACAAAATACAAT CCTGATCAAACCGGGAACTACCACATTCTGGTAGTCTAGTTTCCCCAGTGAGATTATTTTTTTCATTCATAAACTCGAAC TCGAGATCTTGTTTAAGAGTAATATAATTAAGCATGTACCACTTAAAGTAACCACGGATACTGTCTATTTATACTATCAT ATTAAGAAAATATAATGTCATTTTCTGAACCAAAATTGCTGAATTTTGATTTCCCACAAAAAAATTCTTTGCAGGCAGAC CTTCAAACAGCACTTAGGAGTTTGTTTCCAGAAGACTTTTCTAGACAAACCCAGCAAATTGATCATAATAATCCACCAAC ATCATCTTCATCTTCTTTAAGATCACCATCCACAGGCAGCCCTGAATACTCATCTCTGTTATTCAACAATATTCCAGGCA CTTCTTCTCAACCCCATTTTCCTGAGACCCTTAGAGGAGCTCTGCCTCCAATAAACCCATCCACAAGCCCCCACCACCAC CACCACCAACAACAAGCCATTCAACTCCAAGCACTGGCTCAAACCACTCCAATTCAATTCCCTACTACTCCAAATATTGA ACATGATGCAATAATGAGAGCAATCCTCAATGTTATATCTCCTGTACCCTCTCAGCAGCAGAACTTGCCTTACATGGTGC ATCCAGAAGCTACTGCTTTCATGAGGTATAGTAATAGACCTGATCATATCACATCCTCCCAAATGGGGTCCAATCTCAGA AGGCAAAGCTTGATGAAGAGATCATTTGCATTCTTTAGAAGCTTGAACTTTGTGAGAATGAGAGAAAGGAATCAAGCAAC GCGTCCCTCTAGCACCCAGCTGCATCATATGATCTCAGAGAGAAGAAGGCGTGAGAAGCTGAATGAGAATTTTCAAGCAC TCAGAGCACTGCTTCCTCCAGGAACTAAGGTACAAAACTCATCAATTCCTTGTAGTTTTACAAACAATGCATTATTATGC ATGTAACTCCAACAACAGACATGAATAATAATAATTATTATTATTATATAATTATATTTCTAAGGTACCCCTCACGAGAC CTTATACTTAAATTAGACATTTTATTTGACTACTCACAAAAATTTTAAATTAGACATTTTAGTTATAGCATACATGAACT AGTTGTTTTTTCATTCGAGTCATAACATGTTATGAACCAATGTTTATAAAAACCGGGCTGGGCCGTTTGGATCGACAGGG AATCGGACCAGTAGTCGTTCCATAATGTTGTTGTTTATAACTAATAGAACAAGAATAGGATTGAACCGGTGATAAAAATC GGATTGAACCGGTCATATTAAAAAGAAAAACATTTCTTTTAATTTGAAAAATATTTTTAACCATTTATTATCTATTCTTC ACCATATAAAAGTATATCAGGTGAAGAACTTATAACAATTTGAATTTAACTAATCAATATTACTGAATATTTTATGTAAA TATATTACATATCATAATATTGAAAATTTTATTTAATTACAATAGGTTCAATCACAATTTAATTATCAAACTTTGAACCA ATGTCTCGACTGATTCGGTGTCCAACCGGCTTTCTAAATATTGTTATGAACCAATATAGTAAATATTGCTTTTTTAACTT GTTTTAGTTATTTCAAATAATTGCCTGAATAAGATCATGGTTTTGTCAGAAAGACAAAGCTTCCATTCTGATAACAGCAA AGGAGACATTGAGCTCTTTGTTAGCTGAAATTGACAAGCAAGCCAAAAGAAATCAGGAGCTGACGTCACTATTTCCAGCC AAAGAATCTACAACTGAAGGAACCAAAGCCACCCTATCATCATCATCAAATGAAAGATTCAGTGTCCAAGTTTCAAATGT ACTAGAATCAAGCTCATCTGAAGAGAGAACGGTGGACTTGCAAGTGAATTTGAGAGGACAAATTTCTCAAGCTGATGTGT TGATTCGATTATTGGAATTCTTAAAACAGGTTCACCATGTGAGCTTGATTTCCATGAGCACAAATGCAGAAGGGAATGCC ATTCATCAACTAACCTTCAGGCTAAGGATTATTCAGGTATGGAGCATCTTTTTAATTAATTATAGTAAAATAGATTGATT TTAAACATGTCCATGTATATATGTTTACAAACTATAAAATGTTAGAGAAAATGATAACTATCTAGTTAGAATATGTGTAA GGGCATGAGGACAGATATTAAAAAATAAAAATTAATGTATTATTTGTACATGATAATATATATTATTAATCTTTTGGAAG GGGGTGGCTGCATGATATGACAATATAATTCATATTCAAACGGTACTACATAGAATTAGATTTGGAGAAAATAAACGGCT ACTTTAATGCGATCCTGGAATACCCCTTTGACTAGCATATGGTAAGGAAAACTAATATTTTATATAGAGTACAATGTTCT ATAGTTAAATAAAAGGAAGGAGCTTAGCAGGTGCGTGCAGTTTGTGAGATTTGAGAGGGTGGTTTGGTGTGCTGATCGAG ATTTGTCACCTTCCTTGAATGATACAGAAACTACATATTCAATTTTCAAAAAGTGGATTCTATTTCGGCAGCCATCAAAC TTAAGTCAGCACGAAATATTCTTATAATTTACTGTACATAGTTACAATTTTGCCTTAGTTAAAGAAGAAACGTAAACGTG TGGTTGAGCTTGTTCAACTAATCAATTCATCTACATTTCAAAAATATTATTATATCATATATGTAGAATGCATTACTTGC GCCTCTTCTTTCTTGATCATTAACGTCACATTTTATTTAAAAAATCAAATTAATTAATACTACCAAAAACAAAAGTCAAG ATAGTCATCATTAGTGAGGGTGGAAAGTTTATATGAAGAATAATCTGGTCTCTATGTTCATGCAGGGAAGTGAATGGGAC GAGCTTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTGCCAAGTGGACCAATAGTTATGAGGGAC CTACATCGATCACCACTTATCTTTAATTTATACTGTAGCAGTTTTTATGATATGTTGGTTTCATAATTAATTGGTCTTAT TAAGTTAGTCCATTACTACTACCAAATTTTTGTGTTCGTTTCACGTGAAACGAATATTGATGTATATTAATTTTAAGCAA ATGAAAATGCACACATGGAATTGCATGTCGATCTCCATTTATCAATAATTTTTATGTAAGGCCACCCTACAGATAACATT TGATATAATTAAAATGAATAAGTGCAAAATAAAGGA
CDS sequence (LotjaGi6g1v0230900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCAGACCTTCAAACAGCACTTAGGAGTTT GTTTCCAGAAGACTTTTCTAGACAAACCCAGCAAATTGATCATAATAATCCACCAACATCATCTTCATCTTCTTTAAGAT CACCATCCACAGGCAGCCCTGAATACTCATCTCTGTTATTCAACAATATTCCAGGCACTTCTTCTCAACCCCATTTTCCT GAGACCCTTAGAGGAGCTCTGCCTCCAATAAACCCATCCACAAGCCCCCACCACCACCACCACCAACAACAAGCCATTCA ACTCCAAGCACTGGCTCAAACCACTCCAATTCAATTCCCTACTACTCCAAATATTGAACATGATGCAATAATGAGAGCAA TCCTCAATGTTATATCTCCTGTACCCTCTCAGCAGCAGAACTTGCCTTACATGGTGCATCCAGAAGCTACTGCTTTCATG AGGTATAGTAATAGACCTGATCATATCACATCCTCCCAAATGGGGTCCAATCTCAGAAGGCAAAGCTTGATGAAGAGATC ATTTGCATTCTTTAGAAGCTTGAACTTTGTGAGAATGAGAGAAAGGAATCAAGCAACGCGTCCCTCTAGCACCCAGCTGC ATCATATGATCTCAGAGAGAAGAAGGCGTGAGAAGCTGAATGAGAATTTTCAAGCACTCAGAGCACTGCTTCCTCCAGGA ACTAAGAAAGACAAAGCTTCCATTCTGATAACAGCAAAGGAGACATTGAGCTCTTTGTTAGCTGAAATTGACAAGCAAGC CAAAAGAAATCAGGAGCTGACGTCACTATTTCCAGCCAAAGAATCTACAACTGAAGGAACCAAAGCCACCCTATCATCAT CATCAAATGAAAGATTCAGTGTCCAAGTTTCAAATGTACTAGAATCAAGCTCATCTGAAGAGAGAACGGTGGACTTGCAA GTGAATTTGAGAGGACAAATTTCTCAAGCTGATGTGTTGATTCGATTATTGGAATTCTTAAAACAGGTTCACCATGTGAG CTTGATTTCCATGAGCACAAATGCAGAAGGGAATGCCATTCATCAACTAACCTTCAGGCTAAGGATTATTCAGGGAAGTG AATGGGACGAGCTTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTGCCAAGTGGACCAATAG
Protein sequence (LotjaGi6g1v0230900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCNKGEIELGFLNMSQADLQTALRSLFPEDFSRQTQQIDHNNPPTSSSSSLRSPSTGSPEYSSLLFNNIPGTSSQPHFP ETLRGALPPINPSTSPHHHHHQQQAIQLQALAQTTPIQFPTTPNIEHDAIMRAILNVISPVPSQQQNLPYMVHPEATAFM RYSNRPDHITSSQMGSNLRRQSLMKRSFAFFRSLNFVRMRERNQATRPSSTQLHHMISERRRREKLNENFQALRALLPPG TKKDKASILITAKETLSSLLAEIDKQAKRNQELTSLFPAKESTTEGTKATLSSSSNERFSVQVSNVLESSSSEERTVDLQ VNLRGQISQADVLIRLLEFLKQVHHVSLISMSTNAEGNAIHQLTFRLRIIQGSEWDELAFQEAVRRVVADLAQCQVDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 393 | 393 | 1.4E-120 | – | |
| PANTHER | 1 | 393 | 393 | 1.4E-120 | – | |
| MobiDBLite | 36 | 80 | 45 | - | – | |
| MobiDBLite | 36 | 106 | 71 | - | – | |
| SUPERFAMILY | 208 | 273 | 66 | 1.16E-13 | ||
| CDD | 208 | 263 | 56 | 3.88502E-10 | ||
| Gene3D | 209 | 282 | 74 | 7.0E-12 | ||
| ProSiteProfiles | 210 | 259 | 50 | 13.732 | ||
| Pfam | 214 | 259 | 46 | 6.1E-10 | ||
| SMART | 216 | 265 | 50 | 7.8E-9 | ||
| Coils | 216 | 236 | 21 | - | – | |
| Coils | 256 | 276 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0230900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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