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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231600 |
| Transcript ID | LotjaGi6g1v0231600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cotton fiber-like protein (DUF761); TAIR: AT5G56980.1 cotton fiber protein; Swiss-Prot: sp|O95996|APCL_HUMAN Adenomatous polyposis coli protein 2; TrEMBL-Plants: tr|A2Q545|A2Q545_MEDTR DUF4408 domain protein; Found in the gene: LotjaGi6g1v0231600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54032042..54037085) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTTTCATTTGATTCTTATAAAAAGGACAAAAATTGTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTAA TATTTTAACCAATGAATAATTTTTAAACTTAAGCCAAACATTAAGGTCCAACCCTCTTCCAATTTTGACACATCGCTTCC TTGGCGGCGATTCCTCCCCTTCAACTCCACAAACTGTGTCACAACCACCATAGCTAAGACCATCCTCCCAAAATGAACCA TATTTTAACTGAATCATGGTAGTTCACTTTTTTACTGAACCACCCACAAGCAAAACTAGGTAGTGGAAAATGGGGGAGTC GCCCTCCGAAGAAAAAAACTTTCAAATAGAATAGTATTTAAATTTAGGCTTAATCCTCAAATTAGTCCCTGTCTTTGCTT CGCCGTCTGAACCAGGTCCCTGACAGGAAAAATTTGTGGCATCAATCCCTCTTGTTCAAAAATGTTTGGAGCCAGTCCTC GCCGGAGCTCCGAGCTCCGGCGAGTGATGATGTAGCGCGCTGACTGTGTAAATAAAGATGACATGGCACTAAAAAAAATA AAAAATAAAAAATAAGGTTTAATTAACATAAATTAACTATTTCTAATCCTAACCCTAACTTAATTACCCAAATCTAATTA ACCCCAAATCAAAATCCCCAAATCAGAACCAACCAGGGAGATCTTCATGTTCCAGTCTCATCTTCTTCCTCAGGTTCCTT GTTCCAGTTCCAGTTTCACCTGCAACCCTCCCTCACCTCTTCCAAAACAAAGCTTCTGAACCATCCCTCCATCACCTACA AACCACCCCTGAAACCCACCCCCACCCAGAACCCATCGCAACCCACCCCACCCTCACCTGCAACCCGCAATAGAAACCCA CCCCCATCCCCACCCTCACCTGCAACCCACCACAGAAACCCACCCCCACCCCCATCCCCAGCCTCACCCGCAGCAAACCA CAGAAACCCACCCTCACCCAGAAATGGAGCCCACAAATCCCATCTAGAACGAAGGAGAAGATAAGAAGCAGAAGACAGAT TTGCTATGGGTATGAAACAAAGCTTCCTCTTCTTCTTTTCGATCTGGCTTGCTTGCTTCCTCCTCCCTCCACCCCTGAAA CCATAAGAATATCGAAGAGGAAAGGGAGGATGTTGATGATCGGACTAGGAAGAGCGGAAGAAACAAACCAAGCAAACCTA TGAGTCTCTCTACGCGACCGTCTTTGTGGATTTTGGCGCGGGGGGAGAAATCGACGGATACTTCATTACCAGAGCTTGAA TCCATGGCGGAATGGGATGGTGAAGAACTTCCGAGTGTTTCTTTTTATAGAGAAGGAAGAAGTGGGCAATAATGTTATGG GCAGAAGATTGGGACGTGGTGGGAGAAGTGAGAGGAGAGGAGAAGAAGAAGAAGATGAAGATTGGGATGTGGTGGGAGAA GTGAGAGGAGAGGAGAAGAAGAGGAAGAACAGATGAACCCTAATTTCAATTGAGGCAATTGGGAATTGGGTTAATTTGGG AGAGAGAATTAGGATAAGTTTGGGGGAATTAGGATCAAATTAAGTTTAATTAGGTTAATTATGTGTTTATTATATTAAGT TATATTATTTTTTTATTTTTTTTATTTTTTAAGTGTCACGTCACCTTTATTTAAATAGTCAGCATGCCACTTCATCCCTC GCCGGAGCTCCGAGCTCCGGCGAGGACGGGCTCCAAACATTTTTTAATAAGAGGGATTGATGCCACAAATTTTTTTCGGT CAGGGACCTGGTTCAGACGGCGAAACAAAGACAGGGACTAATTTGAGGATTAAGCCAAATATATTTTTGCCCCTCATAAG ATTTTTGTGCCGCCTTTTTCAATTAATAATCATTATTTTACTTAATTTTGATAAAGCCCCAGGAAGCACCCTAGACATTA CCCAACAATCTATTCAAATTACGAGCAGTGAAGACCCTATTAGGTGGTGTTTGAAAAGCTTACGATACCAAAATAATTCC AAAAGACATGTAGATGCTGACATCCATTAGCTAGCTAACAGAACAAGTGTCTATAAATTAACCAACCGTCTAAGGATAAC TACGAACGATGATGGTAAGGCTGAACAAGCTCGAACCAAGTTCCTAAAGGCATCATTACACACCCAAATTAAGTCTAAAT CACTCATAATTATATAGTGGTAAAATATATATTCATGCATGACCCTGTGCAGTCATGTTTGTCCGCTAGAAAAGACGAAA TTAACAATGTTCAAAATCACCATTTTCTTTTAAAAAATGACTAATGCAGCGAATTCCTCCAAGAATTAATTTAATAAACA TGTGTATTATGTGAAGGTGAGATATATAGATTGATTAAAAACATAAGTAAGTAAAATAAACAGCATATGTAGTGGTTAAT GAAAAATATCTAGTAATGTGACAAATTGTGAGGAGTCATCAAATTAAGATCCTCTCCATCCAGCACCGGCCTTTGCGTTA CATTCTCCTAATCATCCCAAACCAGAGTCAATTAACACGTTACATTTAAATAAATAATCATGCTACTTGATAATAATATA ATACTATAATAGAGAATTAGGAACAATTAATTAATTATTTACGTATCACCTGACGTTTGAGCAAACGGATAAAAAAGAAA CAGCTGATGAAATGAATGGAAGTTAACGTCTTCATATTTTTATATAAACAAAGAGTTGTAAACACTGCATTGCACCACCA TTCATTCATTCTCTGCAACAAGAGAGAAAAACACAAGCACCTGAAGAAAGAGAAACAGTTATCACAGATATCAACATCAT TCATCTGGAAACAAACACGGAATTAGTAGAATTAATCTCATGGGTGCTGAAGCTGAAGAAGGAGGTGCTTCAATTACTTC AGTATATGCTACTATGATAGCTAGTTGGCTCACACCGTCGTGTCTATTCATCTTGCTCAACCTTGTCATCGGCACCATCG CTATCACCTCTCGTTCCGCTTGTCAAAAAAGAAGGCAACTCGACTCGTGCGGCGCCCCTTCCCCCTCCCTGCTAGACCGA GTCACCTCCTTCGGACTCGGTTGCTGTAAAATCAAACCAGCAGCAACCGTGTCAGAATCCCAGAGGAGCGTTGTTGACCC GGTCCAGAACAGCGACTCGCCCCGGCTCAACCGGGTCCCCTCGTCCTGTGAAATTGCGAACCCTGCAGCTCCGGACCGGG ACCCGAATGAGCTAGGCCAGAATCAACTTCCCTGCGATGGGCTCGACCAGGTCCCCTCCTGTGAAACTGAGAGCCCTGCA GCTCCGGACTGGAATCAACTTCCTCGCGCTCCATCGTTCCTAGAGCGGATTGTGTCTCTGAATTTCCGAAGATCAGATTC GGTGAAATCCGAGAAAGGATCCGGACCCGATGTTACGGGGTTAATGGAAGAGGAGAAAGGCGTGGACGCGAGGGCTGATG ATTTTATCAAAAGCTTTAAGCAGCAATTGAGGATGCAGAGGCTTGACTCCATTCTACGTTACAGGAACATGCTCCGAAGA AATTGAGAGCAAGACAAGAGAATTAAATTGGTCCATTTTTTTCTTCACAAGCTGCATGAAGTTTGAACTGATTACAGTGA AGAATCAATTGATAGATTATTATTCCATTGCAGTAGAGAACAAGGTTAGGTTGCATGAAGTTACGTGTTCACACAATAGT AAAAAAGTAACGATGTAATGTTACATGTTAAGAAGGAAAATGTAACCACCATTCAATTGTGGTTTTGATTGGATTTGTAC TTTGTCCTGTATCTAGATAATTAAATATAGAATACAAGGATCTCTGTACAATTGAGAGGGAAATTCTGATAGAATTCAGA TTTCATCTTTCTACATATACAAATTTGAACATTGCAGACCATTGGATTCTTAAGGGACAACACTAGCTTCCTATTGGGTA TCTAAAGAAGGATAAGAAATCAATCCTCAGGCAAAAACTACCCTCACTGCAACTAGGAGAAGCCTCTTTGGTCTTGCAGT TGGAATTACAACCACCTCAAACCAATAAAACCTATATGCATACAAAAATTGGTATGCTCTCAGAGGAGGATTCCTTGAGC AATGATTACATATATACAAATCAGTAATTATGAGCTGAAATGTGGTAACCAGTCAATGAACTTCAGTAATAGTGGCGCGA GCATAGCTCAGAAGAACAGGAGTGGAAGGTGCAACAATGAATTCAAAACCCACTAGCAGCTTTCAATATGGTCAATGTAT TTGAAGTTTTAAACCCAAATTAGATTTTGTAAGCAGTGTAAGATGACAGCAGAAAGAAGTTGGTGAATTGATTGTCTCAG TTCACCTATGGCATGAAAATGATTGCTAATACTGCTAAATACTCGATTTTTCATTGAAATAGATTGGGATCCTCTTAAAT CATATATGTCATTTTATCAACACTCAGGCTGACAATACATTACAATTATCATGCCAAAACCAGTTTATTAGCTCAAAGTC AAGGCTTCCCTTGTAAACCTTTAGGAGCACAAAAAATTGAGGGGAACAGGGAACTAGTTCACTTAAAGCTGGCAGTGCCC TGTGATGCCCACTTAAAATAGACTCTCCGAGAATCACAGTGGCATCAAAGAGTTAAAGGAAAAGAGATTCTGTAAGAATC ACTTTTGCAAGCTTGTTGTCCACCTTATTGCTTAAACACAGCATTAACTACTAATAAGATCTTTCCTTACTTTCATCTCA TTGTCCACTCACATGACATAACTGTATCAGTAGTAATAAAGAATAAAAACACAATTGAATCAATGCAGACAAATATATTA ACCTGAATCATCATCAATAAACATCATGGGAAATCAGATCAAATCCATTACAATAGTCCATAATCTATATATCAAGTGGA ACATAATATACATATCTAAATTATGTCACAAACACAGCAGAGACAGCTACTAACTTTACAATATCAACTGCCTGCCACCC ATATCTCAAAAATAAAAAGCAACAAACCAGTACTTCTGTTGTAAATAAGGAATTAATATAAGAATTATTATTAGAAGATT ATAT
CDS sequence (LotjaGi6g1v0231600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTGAAGCTGAAGAAGGAGGTGCTTCAATTACTTCAGTATATGCTACTATGATAGCTAGTTGGCTCACACCGTC GTGTCTATTCATCTTGCTCAACCTTGTCATCGGCACCATCGCTATCACCTCTCGTTCCGCTTGTCAAAAAAGAAGGCAAC TCGACTCGTGCGGCGCCCCTTCCCCCTCCCTGCTAGACCGAGTCACCTCCTTCGGACTCGGTTGCTGTAAAATCAAACCA GCAGCAACCGTGTCAGAATCCCAGAGGAGCGTTGTTGACCCGGTCCAGAACAGCGACTCGCCCCGGCTCAACCGGGTCCC CTCGTCCTGTGAAATTGCGAACCCTGCAGCTCCGGACCGGGACCCGAATGAGCTAGGCCAGAATCAACTTCCCTGCGATG GGCTCGACCAGGTCCCCTCCTGTGAAACTGAGAGCCCTGCAGCTCCGGACTGGAATCAACTTCCTCGCGCTCCATCGTTC CTAGAGCGGATTGTGTCTCTGAATTTCCGAAGATCAGATTCGGTGAAATCCGAGAAAGGATCCGGACCCGATGTTACGGG GTTAATGGAAGAGGAGAAAGGCGTGGACGCGAGGGCTGATGATTTTATCAAAAGCTTTAAGCAGCAATTGAGGATGCAGA GGCTTGACTCCATTCTACGTTACAGGAACATGCTCCGAAGAAATTGA
Protein sequence (LotjaGi6g1v0231600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAEAEEGGASITSVYATMIASWLTPSCLFILLNLVIGTIAITSRSACQKRRQLDSCGAPSPSLLDRVTSFGLGCCKIKP AATVSESQRSVVDPVQNSDSPRLNRVPSSCEIANPAAPDRDPNELGQNQLPCDGLDQVPSCETESPAAPDWNQLPRAPSF LERIVSLNFRRSDSVKSEKGSGPDVTGLMEEEKGVDARADDFIKSFKQQLRMQRLDSILRYRNMLRRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 14 | 108 | 95 | 1.2E-43 | – | |
| PANTHER | 14 | 108 | 95 | 1.2E-43 | – | |
| Pfam | 15 | 45 | 31 | 3.6E-10 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| Phobius | 43 | 228 | 186 | - | – | |
| MobiDBLite | 87 | 107 | 21 | - | – | |
| MobiDBLite | 87 | 129 | 43 | - | – | |
| PANTHER | 171 | 227 | 57 | 1.2E-43 | – | |
| PANTHER | 171 | 227 | 57 | 1.2E-43 | – | |
| Pfam | 194 | 227 | 34 | 2.7E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0231600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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