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LotjaGi6g1v0232400.1

Overview

Field Value
Gene ID LotjaGi6g1v0232400
Transcript ID LotjaGi6g1v0232400.1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT4G26150.1 cytokinin-responsive gata factor 1; Swiss-Prot: sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22; TrEMBL-Plants: tr|I3S8Q9|I3S8Q9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0232400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:54145649..54148971) extracted from Lotus japonicus Gifu genome v1.2.

CAACTAGCTAGGGTTAGTACAGAAGATAGTTATGCAAAATGCAGAGGTGTGCGCAGTGCGCAGCAGTGGGGTAAAAAAAT ATCTGGAAAAATAGCGTTTTTGTCATACGCATGGCGGGGTCAGCGTTGTAGCATTCCACACTCTCCTCCTGAGTTAATTT GTCTCTTTTATTTGTCTCCTTCATATCTCTGTCTTCAAGTCACGTGAATGTCTTTAGATTAGGTTAGGCTGTAATCTGTT CCCTATAAATGAGTTTTATTTACTAAAGCTTGTAAGTTGTAATGCTCAGAACCTTTTGGCCTTGTGTTTCTTCTCTCTAT CTTTTCTCCCAACCCTTTCTTCTAACTTTATTAGTGGACAAAAGGTAGGCCGTTGCAGTATCCATACCTCTCTCTCTCTC TCTCTCTCTCTACACTCATCCAATGACACCAACTTATCAGTATGAGGTATCTTCTATGCCTTTTGATCTTAATTATGAAG ATCACAGTCACCAGCTCTTCAATACAAACCATGATCAAGCCTCTTCTTCATTATCATGTTCTACGCTCTACAACCCGGAT CAAGATCAAGAAGCTAGATCTTACTACATGGAACCACAGCCCTTACAAAGTGATCATCAAGAGGTGAGTATTTTTTTCTC TTGGTAAGCAAAGATTCATTTCACCAAGCACAATAGGTGCTTGAACCCATATACAACTAAGAGGTGAGTCATTTAAGACA TATTCACACATCTAGACACATAGTTTAAGTGTGATTCAAAGTATCGTGAACCAAGAAAAATCTAGTTCTCAAGTTAAAAA GTTTCTCTTCAAACTAACTATAGCACAAAATGAGGGAATAAAATTTATTAAATGTTAATAATAAAAATATGACTCATGGA TGGACCAGAATTAACCCTAAAAGTATATAGAGCACCTGAAAATCTTAATTACATGATTATTTAATTAGGACATTTTGTAT ATTTATGTTTGCTTTTGATCAATTTAATGATGCATGTGATCTTTAGGCAGAGAAGGCTGTTCCTTCTAGCGGATCATGGG ATCATCCAGCAGTTGAAAAGGATGAAAACTACAGAAGTGACCTCAAGCTGAGTACTGTCCGGAAGAAATTAGAAAATGGG AATGAAAATCTTCAAGGTGATCATCATCAGGAGGATAGTTCAGCAAAGTGGATGCCTTTAAAGATAAGAATGAAGCGGAG ACTGATGGTATCGGATCAAACGAGTTCTGATCACGCCATAGCAGGAATCCAAAGCACTGATGAGCATAAGCAAGAAAATC AAAAGCTACCATTACCACAACATCTAAGAAGTACTGACAATAGCAGCTGCAACATTCCTTCAAACAACAACAGTAATATC CCTGCTGTTAGGGTTTGTGCTGATTGCAACACCACCAAGACCCCTCTCTGGAGGGGTGGACCAAGAGGTCCCAAGGTACA TACACCTTTTCCCCCCCTTTTTTTACCTGTATTTTAGCAATTTCTATGTATAAAAATATATAATTAGCTCCATGTTTTTC ATTTAATTTAATGTCATCGTCATTACGAAGTGTACAACATAATTTTAAGTTGTAGTTGCGGACACAAGTGTCATGATCCT TAAAGTTACGGAAGGTTATGTAAATGTAATTGATGCGGCTACAATTGTGATCCTTCTGACTCAAAAACCTTTGATATTGT GGCCGCAATTGCAGTTATGGACAACGATTTTTTTAGACGATTGTTGAGAACATAAACAATTAGTTAGTTAAGCTCTTTTA TTTCATGACTTAATGGGAACTCAAGCAAGTAGAACTTGAGCCATTCAATTATTTCTCCATTTAAACTAAATGTTGAAATT TTTATTTTGGTTGTAAACAGACACTTTGCAACGCCTGTGGGATTCGACAAAGGAAAGCGAGACGTGCCCTTGCCGCCGCT TCTACTGCTGCTGCAAATGGCGCCCCTCTCATGGCGGCAGCTGATCAGAAACCTCATGTGAAGAGAAATCACAAGTTGCA AATCAAAGGGAAGAAGTCCAAAACTGAGTTGAAAAAGAAGCCTAACCTTGGAGGGGGAGGTACAAAGAAGCTTGGTTCCG AGGAATTGACAATAAGCTTGAGTAAGAGCTTGGCTTTGCCACAGGATGAGAAGGATGCTGCAATCTTGCTCATGGCTTTG TCTCATGGCCTGCTTCATGGCTTCCCCTCACATCGTTACTTAGATTTATAAAAATTCTGTCATAATTAGAATTTTGATTG ACAAATTAATAATTTTAATTATGACAATAATATTATTTTTTTGCTGTGGGAGAAGAGGGCGTTATTAGGAAAACTGATAA TTGGGACGATAAATTATGAGGTGGGGGGGGGGGGTTGTTAACTTATTTATGTTGCATTTTGAACAAGTAGACAATGGTAC TCTCTTTTTCATGCATCATGAGTTACCTATAATCTCAGCAAATTAAGTAAGTTACAAGTGGTGGAGTTATGGAGTAGAAG GCCACATCGGTGAATAAAAATAATGAGTGAAGTAGGATTGAAAAGTTCCCTTATTATTATGATGAATTGTGGAGTAAAAA GCCCACATGCCTGAAATTAAAACTCATCTAGCTATAGATTTGAAGCATTGATCCTTCTTCACTGGTTAGTTCTTGTTTGA ATGAATTTTTGGTATGTCATTGGGGAAACGAAAATACAGTTCATGTTATGAATTCACATCTTGGAAGTCTCATCTTGATC TTAGGAAGGGGTACTCTTTTTCCTTCACTAGGTTTTCCCAAGGGAGTTTTATCCTAGTAAGGTTTTAATGAGACCCCTTT CTTTGATCTTTTTTCCAAGGTGGGGTTGGTGGCGGGTTCTCTTTCTTTCTGTTTTATTTAGATCTTTTGCTTTTGTACTC ATTTTCTTCTCTATCTCTTTGTATTGGGTTGAAGTACCTCTTTGTACTTCACTTAATATATTCATTTCATTGCCTATAAA AAAAATGTTATGAATTCACATGTGAGCAATGCTATTTAATACTAGAGTTTAATTTCTATGCATGGACGGTTTAAAGTTTT TTTACACCGTCAATCAATCAGATTTTAAGGATATGAGAAAAATTTTCTTTTTATTTAATTTCATTAATTGACGTGACACA TCATTGGAATCTGATTGGCTGACGGAATGAAACTTCAACGAAACCATTTGTTCCTAATATATATTATTTTTTGAATGAAA ACAGCTAGGCTGTGTTAATTAGATTGATGGAGCATGGTGGGAAGGAATGAAATGGTGCAATGTTCTTTTGTTTGGATTTG TAAACTAAAGGTGGAATGAGATGGAGTGTTCCTCTCATTTTAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0232400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACACCAACTTATCAGTATGAGGTATCTTCTATGCCTTTTGATCTTAATTATGAAGATCACAGTCACCAGCTCTTCAA TACAAACCATGATCAAGCCTCTTCTTCATTATCATGTTCTACGCTCTACAACCCGGATCAAGATCAAGAAGCTAGATCTT ACTACATGGAACCACAGCCCTTACAAAGTGATCATCAAGAGGCAGAGAAGGCTGTTCCTTCTAGCGGATCATGGGATCAT CCAGCAGTTGAAAAGGATGAAAACTACAGAAGTGACCTCAAGCTGAGTACTGTCCGGAAGAAATTAGAAAATGGGAATGA AAATCTTCAAGGTGATCATCATCAGGAGGATAGTTCAGCAAAGTGGATGCCTTTAAAGATAAGAATGAAGCGGAGACTGA TGGTATCGGATCAAACGAGTTCTGATCACGCCATAGCAGGAATCCAAAGCACTGATGAGCATAAGCAAGAAAATCAAAAG CTACCATTACCACAACATCTAAGAAGTACTGACAATAGCAGCTGCAACATTCCTTCAAACAACAACAGTAATATCCCTGC TGTTAGGGTTTGTGCTGATTGCAACACCACCAAGACCCCTCTCTGGAGGGGTGGACCAAGAGGTCCCAAGACACTTTGCA ACGCCTGTGGGATTCGACAAAGGAAAGCGAGACGTGCCCTTGCCGCCGCTTCTACTGCTGCTGCAAATGGCGCCCCTCTC ATGGCGGCAGCTGATCAGAAACCTCATGTGAAGAGAAATCACAAGTTGCAAATCAAAGGGAAGAAGTCCAAAACTGAGTT GAAAAAGAAGCCTAACCTTGGAGGGGGAGGTACAAAGAAGCTTGGTTCCGAGGAATTGACAATAAGCTTGAGTAAGAGCT TGGCTTTGCCACAGGATGAGAAGGATGCTGCAATCTTGCTCATGGCTTTGTCTCATGGCCTGCTTCATGGCTTCCCCTCA CATCGTTACTTAGATTTATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0232400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTPTYQYEVSSMPFDLNYEDHSHQLFNTNHDQASSSLSCSTLYNPDQDQEARSYYMEPQPLQSDHQEAEKAVPSSGSWDH PAVEKDENYRSDLKLSTVRKKLENGNENLQGDHHQEDSSAKWMPLKIRMKRRLMVSDQTSSDHAIAGIQSTDEHKQENQK LPLPQHLRSTDNSSCNIPSNNNSNIPAVRVCADCNTTKTPLWRGGPRGPKTLCNACGIRQRKARRALAAASTAAANGAPL MAAADQKPHVKRNHKLQIKGKKSKTELKKKPNLGGGGTKKLGSEELTISLSKSLALPQDEKDAAILLMALSHGLLHGFPS HRYLDL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47255
1 317 317 2.3E-79 –
PANTHER
PTHR47255:SF4
1 317 317 2.3E-79 –
MobiDBLite
mobidb-lite
60 92 33 - –
SMART
SM00401
185 236 52 2.0E-17
IPR000679
SUPERFAMILY
SSF57716
187 224 38 1.05E-12 –
Gene3D
G3DSA:3.30.50.10
187 231 45 8.7E-13
IPR013088
ProSiteProfiles
PS50114
189 221 33 12.36
IPR000679
CDD
cd00202
190 218 29 1.20141E-12
IPR000679
ProSitePatterns
PS00344
191 216 26 -
IPR000679
Pfam
PF00320
191 225 35 3.5E-16
IPR000679
MobiDBLite
mobidb-lite
255 281 27 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0232400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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