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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0233600 |
| Transcript ID | LotjaGi6g1v0233600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide-sugar transporter family protein; TAIR: AT5G57100.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|I1MH55|I1MH55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0233600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54263290..54266844) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTAGCTTCTTAATTAGGAAAGATGCCAGAAAGATTCTCAAGCGCAAAGACAGTGATGCTGGTGAAAAAGGTTCCAT TTTCATCCTACCCACTTGTGTTTTTGGATGCTTGTTTATGGCTGCATTTGGAATTCAATATTTTGTCATATGGGTTTGCT TTTTCATGATTGATTAGTGAAGTTTGTCTGCACAATGAAGTTTATTCTGCATTATTAGTAAATACTTAAGTTGTTTTTAG AAAAACACAAATATTAGTTGATTCTTTTGTCATATGGGTTTTGCTTAGTGAAGTTTGACCTGCACAATGGACCCTTTTCA ATTTTCATGTACTTAGTTAGTATATACTCAAGTTAATTTTTTGAAAAAGCAAATATTAGTTGATTCTTCTGGGAGAAAAA TGAATATAGTTAAAGCAAAATGTTCAAGTAATGGAACCATGTTCTTCCATTAACTTTGTATGGTCATTTTGCAGGAAGAG CTTTGGAAGAATTGAGAGCCTCTCTCTTTAATCGATTCCGATCCCCTGAAGGTGCTAAGCGTCAACAACAGCGTACATGT GGTCCAGCTATTGCACTTTCCTTCAATTTTCTGGTTGCTGTTGGCATTATTTTCATGAACAAAATGGTTTGTTCAATCTG CCTAAAGCTGTGTTCTTTGTTCAAGTTTTGATGTAGGTGTAGCAGGACTTTTTGGTGCTGACTTTTGTTGTTGTTTGGCT TACTTGTTTTGTTTCAGGTGCTTCAAACTATTAAATTCAAATTCCCTATATTTCTTACATTGATTCACTATGGAGTGAGC TGGTTCTTTATGGCTGTACTAAAAGCATTTTCTTTCCTTCCTGCACCTCCTTCCTCGAAATCAACTCGAATGTCCACTTT GTTTTCTCTTGGATTTGTTATGTCTCTATCTACTGGCTTTGCTAATGTCAGCTTGAAGTATAATAGGTAAAGCAACCGTC CCACTAATTACTTTCTTATTCAATTTTTTTGTTTTATACTCTTAATCTAAACTCCATGTCTTCAGCATTGGTTTCTATCA GATGGCAAAGATTGCAGTGACACCATCAATAGTTTTGGCAGAATTTGTATTGTACAGTAAGAAAGTTTCTTTGCCTAAGG TATATTCACTCACTGTGGTTGTGTATGTATTTCTGATTATAATATGTATGAATATACGGGCCTGGCAGGGATACTGGCTA TTATATCATTTGTTAGGGTCTAGAGCTTTTATTTAGCTAACTCATTACTCATGAAATATGTATAGAATTTGTACAAGGGA GATATTTAATTTAAACAATATGGAGCTTCCTTCAATATGAGGAAATTGCTGCTCCTTCAATATGAGGCAAAATGCATAAC CAATTTGTAATTTGTAAAGCTAATATATGTATTGAACTTCCTCATGAATTATGACACCTATAAGGCACCCATATGTTTGT CGAGGATAACTAATTGTAGTAGATTTGAAGTGATTTCACAAGTGAAATTTCATTGTATGTACTCATAAGATCCTATGAAG GATGCAGCTCAAAATTGTGATCTAAAGAAAGGGTCTAGCCACTGAGACCATAGTTTTAGTGTTTGTGATTTGTGATTTGT TAGTCCATATAGTATTGTTTTAGAAACGACTAGCTTCATCTTGTATTATCTTTGTATGATTTAGCTTCTACGCTCTACAT CGAAATGATATCTGCATTGTGTATCCCAAAACAGAAGTTTAACCTTGTTTTCCTCCAAGAACTTTCATGATGACATGGTG TGTGAATATATGTCTGTGTGTGTGTGTGTTTTGTGTTTTTTTTTTGGGGTGGGGGGGAATGGACTTGTGACTTTTATTGT GCTCATCTTGTTCTAGGTTTAAATTCTTACTACAAAATTTGAAACTTCACAGACATTAGCATTGACGGTGGTATGTATTG GTGTTGCCGTGGCTACTGTCACTGATCTGCAGTTCCATTTATTTGGTGCTTGTGTAGCATTGGCATGGATTGTACCAAGT GCTGTAAACAAAATCCTTTGGTCTAGATTGCAGCAGCAAGAGAACTGGACAGCATTGTCGTGAGTAATTTACTATATACC ACCCTTATCTCTCCTTCCAAATTTCTAATACTTGGTGCTGATTTGCATCAGAGGATTTCTTTCTCTGTCTTGTCTAATTT GTGGATTGATCAACAGGCTGATGTGGAAAACAACACCTATTACTTTGATTTTCCTGGCTGCTATGTTACCCGGCTTGGAC CCTCCAGGTGTACTCTCCTATGATTGGAACTTAAGCAACTCCTTGGTGATTTTTGCATCAGCCATTCTTGGATTTTTGCT TCAGTGGTCGGGTGCTTTAGCACTAGGGTAAGTGACATTTCCAGTTCTTTTACAACCTTCGCTAGAAAAAGGATTTCAAT TTCTTAGACAATGTATAGGACCTATTGAGTATAACTTTGTAGAGACCCCACTTGTTTATGATCACTTTAGTGGGCTGTGA AGAACACATTGATGAAGTTTCTTTTAAGAATGAACTCATCTCCAAGGGACCAAGTTTATGTTCTATGATATTTAAAAGTG CAGTAGCATTTCACATTGGAAATTAAGGGTCTATATCACTGTGATGATAGGTTATAGGAAGGCTTGTTAATAGCGCTCTA TAGCGTAGTGCCGTGGGGGTTCACCACTACTCCACTATTCACCGCTAAAGCGCTGCAATAGCGCTTGAAATAGCGTTTTT TGGGCTTGCTGCTACGCTACGCTATCCGCCATTAACAACCCTGGTTATAGGTTTACTTTCATTGAATATTTAAATGTTCT CTGTGGCCATTTGGATATCTCTTATGGTTCTAAATACTTAATTGCCCTTATTTTCAAATGATGTCTCTATTGGTTTCGTT TTAGCTAGATACCATCTTCAAGTTACAGATTTATTTAAATTCTTAGAAACATCTAAGAACCCCATCAAGTAAAATATTTT GGAAATTTGTATATTTTTGCACCCCCAACCTTCTGATGTCAGTAATCATCTTGCAACCTGCTATAAAGATTGATGGGCCA TTTACTTTCAACTGAAGTTTGTACTAAATGGCATTGCACAATTAATTATGTCCAATATCATGTTGCTAACATTGAATACT AGACCATGTACACATCACAAGCATGAGAATCAAAAGCTTGTAAACCAGAACATTATCTTATCATGTTTTCTTTGGCTAAA TACTCTGGATTTACTTCTATTGAGGTTTGCCTTTTTTTTATAAATTGTAATCTACTTATCATGTTTTTTTCTACACAGTG CTACATCTGCCATCTCACACGTTGTTCTTGGGCAGTTTAAGACATGCGTCCTTCTGCTAGGTAACTATTATCTCTTTGGA TCCAATCCTGGCACAATCAGTATATGCGGTGCATTCACAGCTATCGCCGGCATGTCTGTTTTCACCTACCTTAATCTGAA GCAACAAACAAACAAGACATCTCCTCGACAAACTTCCTCCACATTACCAAAATCTAAACTTGGCAAAGAAAATGGCAGCA CCCATGAGGGACATTATGGGACAGAGTCTGTCTAA
CDS sequence (LotjaGi6g1v0233600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGCTTCTTAATTAGGAAAGATGCCAGAAAGATTCTCAAGCGCAAAGACAGTGATGCTGGTGAAAAAGGAAGAGC TTTGGAAGAATTGAGAGCCTCTCTCTTTAATCGATTCCGATCCCCTGAAGGTGCTAAGCGTCAACAACAGCGTACATGTG GTCCAGCTATTGCACTTTCCTTCAATTTTCTGGTTGCTGTTGGCATTATTTTCATGAACAAAATGGTGCTTCAAACTATT AAATTCAAATTCCCTATATTTCTTACATTGATTCACTATGGAGTGAGCTGGTTCTTTATGGCTGTACTAAAAGCATTTTC TTTCCTTCCTGCACCTCCTTCCTCGAAATCAACTCGAATGTCCACTTTGTTTTCTCTTGGATTTGTTATGTCTCTATCTA CTGGCTTTGCTAATGTCAGCTTGAAGTATAATAGCATTGGTTTCTATCAGATGGCAAAGATTGCAGTGACACCATCAATA GTTTTGGCAGAATTTGTATTGTACAGTAAGAAAGTTTCTTTGCCTAAGGTATATTCACTCACTGTGGTTGTGTATGTATT TCTGATTACATTAGCATTGACGGTGGTATGTATTGGTGTTGCCGTGGCTACTGTCACTGATCTGCAGTTCCATTTATTTG GTGCTTGTGTAGCATTGGCATGGATTGTACCAAGTGCTGTAAACAAAATCCTTTGGTCTAGATTGCAGCAGCAAGAGAAC TGGACAGCATTGTCGCTGATGTGGAAAACAACACCTATTACTTTGATTTTCCTGGCTGCTATGTTACCCGGCTTGGACCC TCCAGGTGTACTCTCCTATGATTGGAACTTAAGCAACTCCTTGGTGATTTTTGCATCAGCCATTCTTGGATTTTTGCTTC AGTGGTCGGGTGCTTTAGCACTAGGTGCTACATCTGCCATCTCACACGTTGTTCTTGGGCAGTTTAAGACATGCGTCCTT CTGCTAGGTAACTATTATCTCTTTGGATCCAATCCTGGCACAATCAGTATATGCGGTGCATTCACAGCTATCGCCGGCAT GTCTGTTTTCACCTACCTTAATCTGAAGCAACAAACAAACAAGACATCTCCTCGACAAACTTCCTCCACATTACCAAAAT CTAAACTTGGCAAAGAAAATGGCAGCACCCATGAGGGACATTATGGGACAGAGTCTGTCTAA
Protein sequence (LotjaGi6g1v0233600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSFLIRKDARKILKRKDSDAGEKGRALEELRASLFNRFRSPEGAKRQQQRTCGPAIALSFNFLVAVGIIFMNKMVLQTI KFKFPIFLTLIHYGVSWFFMAVLKAFSFLPAPPSSKSTRMSTLFSLGFVMSLSTGFANVSLKYNSIGFYQMAKIAVTPSI VLAEFVLYSKKVSLPKVYSLTVVVYVFLITLALTVVCIGVAVATVTDLQFHLFGACVALAWIVPSAVNKILWSRLQQQEN WTALSLMWKTTPITLIFLAAMLPGLDPPGVLSYDWNLSNSLVIFASAILGFLLQWSGALALGATSAISHVVLGQFKTCVL LLGNYYLFGSNPGTISICGAFTAIAGMSVFTYLNLKQQTNKTSPRQTSSTLPKSKLGKENGSTHEGHYGTESV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 52 | 52 | - | – | |
| PANTHER | 8 | 184 | 177 | 4.8E-189 | – | |
| PANTHER | 8 | 184 | 177 | 4.8E-189 | – | |
| TMHMM | 53 | 72 | 20 | - | – | |
| Phobius | 53 | 72 | 20 | - | – | |
| Pfam | 62 | 349 | 288 | 1.0E-9 | ||
| Phobius | 73 | 83 | 11 | - | – | |
| Phobius | 84 | 103 | 20 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| TMHMM | 122 | 141 | 20 | - | – | |
| Phobius | 123 | 141 | 19 | - | – | |
| Phobius | 142 | 146 | 5 | - | – | |
| TMHMM | 146 | 168 | 23 | - | – | |
| Phobius | 147 | 168 | 22 | - | – | |
| Phobius | 169 | 179 | 11 | - | – | |
| Phobius | 180 | 204 | 25 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| PANTHER | 190 | 373 | 184 | 4.8E-189 | – | |
| PANTHER | 190 | 373 | 184 | 4.8E-189 | – | |
| Phobius | 205 | 209 | 5 | - | – | |
| TMHMM | 208 | 227 | 20 | - | – | |
| Phobius | 210 | 231 | 22 | - | – | |
| Phobius | 232 | 242 | 11 | - | – | |
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 243 | 262 | 20 | - | – | |
| Phobius | 263 | 281 | 19 | - | – | |
| TMHMM | 277 | 299 | 23 | - | – | |
| Phobius | 282 | 303 | 22 | - | – | |
| Phobius | 304 | 309 | 6 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 310 | 328 | 19 | - | – | |
| Phobius | 329 | 333 | 5 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 334 | 355 | 22 | - | – | |
| Phobius | 356 | 393 | 38 | - | – | |
| MobiDBLite | 361 | 377 | 17 | - | – | |
| MobiDBLite | 361 | 393 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0233600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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