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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236000 |
| Transcript ID | LotjaGi6g1v0236000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member-like protein; TAIR: AT4G29950.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A; TrEMBL-Plants: tr|G7IG77|G7IG77_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi6g1v0236000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54582628..54588250) extracted from Lotus japonicus Gifu genome v1.2.
GAGACAACTCACCATACCTTCCATTCCAACAAGTCAAGCACATACACACAGAAGCACAATCACATACCTACCTTCTTTTC ATTTTTTCTCCATCTTCATTTCCCTTTTTCTGTTCACAAAACAAACTCATTATTCTCTCTCTCTCTCTCTAAAACAATTC ATCATCACAATGAAGCTTGAAAGAACATGAAGAGAAAAACACACAACTGCAAAAATCATTGAGAAAAAATTAAGCCACCC CAATTCATTTTTCCTCATAAATTCATCACCTTGTTCTTACTCCAAGCTCAATTGAGCTTCTTCTTACCTTCCCAGAGAGA GAAATCAAGTAAAGTTAGGGTTTTTTTATTCCTCTTTTAACTTCAGAGTTTTGTCAAATTTTGTTGATTTTCTTCTTCTT CTTCTAGAAAGTTTGTGTTTTTCTGGATTTGTGTCGAGTTTTAGCATCTGGGTTGGTGAGGAATTGCTGCATGGTCATGC CTCCTTCTCTGGTGGATCCATTGTTACCGTCTCCTTCGAGCTCTGACTCTGTTCCTCCGAGATCGGCGCCGGAGAATCGG CGATTCGGTGATCTTAGAGGCTTCCAGTGGCGTATAAATCTTGGGGTGTTGCCGTCTGCGTCTTCAGCTTCCATTGATGT TCTTCGTCGGGTCACTGCTGATTGTAGAAGGAGGTAAATTAGCTCATAAGTCATAATCATGTTTTTTGTGTTTTTAATTT TGTTTTAATCATGGTGTTAATTTCCTTAAAGCCATAAAGATGTTTAAGATTGCATCTACAGTTACTTGTTTATCTTCTTC TGTGTCAGCATCTATCATTGGTGGAAAATGAAAGATGTTGTTTAAGATGTTTATTTTTTTCTGCCACTAAGGATTGGTTG TATAATTTATGAATTTAGTGTTTGCCTGGCATTTTTAAGATGAGTTGTTTCTTGTTTGATACATATGATTTTGATATTTG TTATAATTGCACTCTAGAATTTTCTGCAAATTTTGCATTTTTTTGCCTATTTGGATAGTAATAGAAAACTGTGTTTTGTC TTATCAGGTATGCTAGTTTGAGAAGGCGCCTCCTTGTTGAACCACATGTTCGAAAGGATGGAACTAATTCACCTAATGCT GTCGTGGACAATCCACTTTCACAAAATCCAGGTAAATCCTAGTTTTTTTCACTCCATTCTAGCATCTTAGATGCAGATAT TTTCTAGTTTCAGATCTGTGGTTCTGCCAATATAGTTTCCTAGTTTCCAAAATTTCTGCAAAGTAAAGAGCATAGTACAT ATCTAAACTGCTAGTACACACTATCTTCAACTTTTCATCAGTTGGCTTGAATAGAGACTCATTACGTGGTATATAATTAG TTGTTTCCAGCTTATATACCTATTGTTTTTTTTCAAAGAACTTGTATATGGAAACCTCATTTGTTCTTGAGGAATATTAC CCATTCTTCCTGCCTATTTAAGGAAAATTCAATCAATCAGAAAATGAAGCTAAGAATTACTGGTAATTAACTAATGGTTA TGGTAAAAAAGCAGCGGACAAATAAGAAGAAAATTGTTGAATATGTTGTCCTTGTGTTGGAATTCTGTCATTTAGATTCT TAGTGGTTATCCCTCTCTATCTCTTGCCGGCATTAGTAAATTTATTTGTGATAGTATCATATGGCCTTATATGCAGATAG TACATGGAGTCGCTTTTTTCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTGTCACGCTTATACCCAGAACATG GCAGTTATTTCCAGACACCGGGATGCCAAGGCATGTTGAGACGAATTTTATTACTATGGTGTCTCAGGCACCCAGAATGT GGTTATAGACAAGGTAAATATCTCGGCCAAGTAATTTTGTCACAATATGTCAATCGTAATAAAATTTACCTCCATTTTCT TATGTTTTCTCATTTTTGGGTATCATGTCTTTTCTTTGAACACGCATTTTTGTTTGCTGTGTGTCTGATTTCTACACCAT TCAAAAGAATACCATTATATGCCTAAACTGTTTTTGATATCCTGTTCAAACATTTAAGGAATACATAAATACCTCTACGC AATGAACAATGGGTTTGGTTTATAAATTTTATATCCTATATTCTGTATTGCCAACAAATCCTTAACCCTGTAAAGACATG TTTCAATCTTGTGTATATTGTCAGATTCATGTGTTACTCAAATGACAATGATAACAAAAAGAGGACTCGAAATCAAGTGA TAAAATTATTGAGAAACGTAATATGTGGTAAAATGTAAATTTTATCAGTTTGGCTTCCTGGCTTTCAGATAGCTAGTTTT ACTTTAGCATTATATGCTATGGAAATAGTTGACTCAACATTAATTGATTTCTTTCATCCACTTATTTTATAGGAATGCAT GAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCGTCTTTCAGAAGTTCGGAAGCTTTATGAAGATCA ATTCACAGACAGATTTGATGGCCTTCTATGCCAAGAGAATGATCTTGCTTACAGTTTCGATTTTATGAAATATCCAGACC AGGTAGAGAATGAAATTGGCTCCTGTGGAAATGCAATGAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATAAGGACT ATTGTATTGCTAAGTGATGCATATGGAGCTGAAGGTGAACTGGGCATCGTTTTATCTGAGAAATTCATGGAACATGATGG TTACTGTATGTTTGATGCTTTAATGAAGGGGTACCATGGTTCAGTTGCAATGGCGGATTTCTTCTCTTCCTCCCCTGTAG CTGGGTCCCATACTGGCCTTCCTCCAGTTATTGAAGCCTCTACTGCATTGTATCATTTGTTGTCTGTTGTGGATTCATCT CTGCATAGCCATCTTTTTGACCTTGGGGTTGAACCTCAGTACTTTTCTCTCCGATGGTTGCGAGTTTTATTTGGACGGGA ATTTTCACTTGACAACCTCTTGCTCGTCTGGGATGAGATTTTCGCATCGGATAATAGCAAAAAAGAAAGAAGTGCAGATG ATAACATAGAATGTGGGTTTGGGATCTTAAATTCACCTCGTGGAGCATTTATCTCAGCTATGGCTGTAGCAATGTTACTT CATTTGAGATCTTCACTACTTGCAGCTGAAAACCCTACAACCTGTCTCCAGAGATTACTAAACTTCCCTGAAAACATTGA TATTGAAAAACTACTGGAGAAGGCTAAATCATTGCAGGACCTTGCATTAAGTGTTGATATTTCGTCCTCGTCGCTTTTGT TTGTAGGGTCTCATCACCAAAGTAAGTTTATGTCTACAAGACCCGTGACCTTTCCATCTGAATCTGTCTCTCCAAAAACT CCTCTGAACGTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCACAAGGATGAAGAGCTTAAGAAAGATGG TGCAGAAAATCAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTAAGAAGAACAGAGTCTGATC CATCTCCATCTAGGATTCAGAATGGAAAAAAGGAACCTAAGGTATCTGTTAGGCGCAGTCTGTTAAAAGATCTTTGTAAG GCACTTGGCTCGGAGGAAGATACAGAAAAATTACAGGGTCCTGAAACCCTAGGCCAGCAAGATAATCTTTCTGAAGCAGT TGAAGTAGAGGAGCAAGGTGATGGCTGTAATGGTGACAACAATTACTCATCTGATGATAGAAGTCCCAGTGGGAATTCTG ATTCATCTACATATTTTGACCCGACTAGTCCTCCTAATGAGGCCAATGATCATGAAATTACCTTAGAGAAAAGTAGTGTT GGGTCAAATTTATCCCTTGGTGAATGCAGTGAAACTTCAGATACCAGTCCTAATGATTCACTGCTTCCAATCTCTCATCC TCCTGAGAGCATACCTCAGGCATCAGGGTGCAATAATGACGATGCAGGAAATCCAGGATGCCATGAAATTTCAGAAGCCA GTTCCAATAATGAGGCTACAAAATCAGGGTGCAATAATGATGATGCAGGAAATCCTCAATGCAATGAAATTTCAGATAAT GGTCCAAATAATTCACCATCTCCAATCTCTGGTCCTCCTGAGAACACACCTCAGACGTGCAATAATGATGATTCAGGAAA TTCAGTCACACATCCTAAAGAGAGAAAACAAAATAAATTCCAGTGGCTTTGGAAGTTTGGACGGAATAATGCTGACGTTA TCTCTGAGAAAGTAGGAGGTGCTGCTGAGGCTACAAAACCTACCAACAGTTCTAGCAGCCAAAGTAATAGACCCGCGCCG GCCTCATCTACATCTAATGGTCATTGTAGTTCTGTTAGCTATGGAGGAGAATCTGTGGACCAGAATGTGATGGGAACTTT GAAGAATCTTGGGCAGTCTATGCTTGACCATATTCAGGTAAAGCTCTTTCCACTGCCACTCTTCATTGACACATATTAAG TGCGCGTTTGTATCAGCATGTCAAAATCGATTTTGGATATAATTTATTTTGGTTAAATTAATTACGGTAAAAGTGAGTTG AAAGTGAAATGTGTTTGGATACGTTGATGGGAAAAGTGATTTCAATAGGGTGATATTGTGAAATCTTGTTATGAAATCCC ACAATTGATTGTCTACTGCAGAAGCTTCTCTACAGAATTGATTTTGGGACTAAAATTAATTCTCGAAGTCAATATCCAAA CATCTCAGTAACCACCTAAAAGTGATTATGGTCAATGAAAATTTATTTTGAGGCTCCCAAACGTGAAATAAAATATGTAC AATTTATTTATTTATTTCTGTGCTTCATTTTCTCCTTGGTTTTCTATGAAATGATGTAGACCTCAAAGCTGATAAGACCC CTTTACCCTGGTTTCATACTTGTTATCTCAATGACTGTTTGTGGTGCAGGTGATTGAATCTGTTTTCCAACAAGACCGGG GACAGGGAGCCTCAATGGAGAACTTATCTAAGAATGTTCTTGTTGGCAAAGGCCAGGTTACTGCCGTGACAGCTCTCAAG GAGCTTCGGAAAATTAGCAATCTTTTGTCGGAAATGTGAGTTGTATTGATCATGTACATAGATTTTGTAATTAGTGGGAA TAAATTGATTTTCTTCTGCTGCACTCCACCAAAGTTTTGAAGATATTTAGAGGGAGAAATATGTAAATATATGTATCCGG GTTACATAAATAAATTATGACTATCAATTTATGATTATGGTTTGCTTCTTGCAAACCATGCCTTCCATTTATTTATTTAT TTGCCATCGCATTTTAAAGTGATGCTTGTGTTGCTTGCCTGAGCTAAGTGAATTATGACAACTGACACTCATAAATTCAC ACAGACTACAATCTCTTCAAAATAGTTGAATGTACCACCAAACATCTATGAATCACTTGAATTACATTTTACTAAATAAG ATGGCTTCCACTATGAATTCCTAAGTAAGCATTGAACCATACTAGAAGGCAAAATAGACCATGATTGAGAACAACTAGGT TATTGAGAGATATGAAGGAAGATCGAAACATATTTTACTTTTTTTGGTTCAATAAAAATATTTTACTGAGTCTGGAGATC CGTTAACATGAATTTCAATCGCA
CDS sequence (LotjaGi6g1v0236000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCATGCCTCCTTCTCTGGTGGATCCATTGTTACCGTCTCCTTCGAGCTCTGACTCTGTTCCTCCGAGATCGGCGCC GGAGAATCGGCGATTCGGTGATCTTAGAGGCTTCCAGTGGCGTATAAATCTTGGGGTGTTGCCGTCTGCGTCTTCAGCTT CCATTGATGTTCTTCGTCGGGTCACTGCTGATTGTAGAAGGAGGTATGCTAGTTTGAGAAGGCGCCTCCTTGTTGAACCA CATGTTCGAAAGGATGGAACTAATTCACCTAATGCTGTCGTGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAG TCGCTTTTTTCGCAATGCAGAGCTGGAGAGAATGGTTGATCAGGATTTGTCACGCTTATACCCAGAACATGGCAGTTATT TCCAGACACCGGGATGCCAAGGCATGTTGAGACGAATTTTATTACTATGGTGTCTCAGGCACCCAGAATGTGGTTATAGA CAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCGTCTTTCAGAAGTTCGGAAGCT TTATGAAGATCAATTCACAGACAGATTTGATGGCCTTCTATGCCAAGAGAATGATCTTGCTTACAGTTTCGATTTTATGA AATATCCAGACCAGGTAGAGAATGAAATTGGCTCCTGTGGAAATGCAATGAAAGTCAATAGTCTTGATGAACTTGATCCT GAGATAAGGACTATTGTATTGCTAAGTGATGCATATGGAGCTGAAGGTGAACTGGGCATCGTTTTATCTGAGAAATTCAT GGAACATGATGGTTACTGTATGTTTGATGCTTTAATGAAGGGGTACCATGGTTCAGTTGCAATGGCGGATTTCTTCTCTT CCTCCCCTGTAGCTGGGTCCCATACTGGCCTTCCTCCAGTTATTGAAGCCTCTACTGCATTGTATCATTTGTTGTCTGTT GTGGATTCATCTCTGCATAGCCATCTTTTTGACCTTGGGGTTGAACCTCAGTACTTTTCTCTCCGATGGTTGCGAGTTTT ATTTGGACGGGAATTTTCACTTGACAACCTCTTGCTCGTCTGGGATGAGATTTTCGCATCGGATAATAGCAAAAAAGAAA GAAGTGCAGATGATAACATAGAATGTGGGTTTGGGATCTTAAATTCACCTCGTGGAGCATTTATCTCAGCTATGGCTGTA GCAATGTTACTTCATTTGAGATCTTCACTACTTGCAGCTGAAAACCCTACAACCTGTCTCCAGAGATTACTAAACTTCCC TGAAAACATTGATATTGAAAAACTACTGGAGAAGGCTAAATCATTGCAGGACCTTGCATTAAGTGTTGATATTTCGTCCT CGTCGCTTTTGTTTGTAGGGTCTCATCACCAAAGTAAGTTTATGTCTACAAGACCCGTGACCTTTCCATCTGAATCTGTC TCTCCAAAAACTCCTCTGAACGTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCACAAGGATGAAGAGCT TAAGAAAGATGGTGCAGAAAATCAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTAAGAAGAA CAGAGTCTGATCCATCTCCATCTAGGATTCAGAATGGAAAAAAGGAACCTAAGGTATCTGTTAGGCGCAGTCTGTTAAAA GATCTTTGTAAGGCACTTGGCTCGGAGGAAGATACAGAAAAATTACAGGGTCCTGAAACCCTAGGCCAGCAAGATAATCT TTCTGAAGCAGTTGAAGTAGAGGAGCAAGGTGATGGCTGTAATGGTGACAACAATTACTCATCTGATGATAGAAGTCCCA GTGGGAATTCTGATTCATCTACATATTTTGACCCGACTAGTCCTCCTAATGAGGCCAATGATCATGAAATTACCTTAGAG AAAAGTAGTGTTGGGTCAAATTTATCCCTTGGTGAATGCAGTGAAACTTCAGATACCAGTCCTAATGATTCACTGCTTCC AATCTCTCATCCTCCTGAGAGCATACCTCAGGCATCAGGGTGCAATAATGACGATGCAGGAAATCCAGGATGCCATGAAA TTTCAGAAGCCAGTTCCAATAATGAGGCTACAAAATCAGGGTGCAATAATGATGATGCAGGAAATCCTCAATGCAATGAA ATTTCAGATAATGGTCCAAATAATTCACCATCTCCAATCTCTGGTCCTCCTGAGAACACACCTCAGACGTGCAATAATGA TGATTCAGGAAATTCAGTCACACATCCTAAAGAGAGAAAACAAAATAAATTCCAGTGGCTTTGGAAGTTTGGACGGAATA ATGCTGACGTTATCTCTGAGAAAGTAGGAGGTGCTGCTGAGGCTACAAAACCTACCAACAGTTCTAGCAGCCAAAGTAAT AGACCCGCGCCGGCCTCATCTACATCTAATGGTCATTGTAGTTCTGTTAGCTATGGAGGAGAATCTGTGGACCAGAATGT GATGGGAACTTTGAAGAATCTTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAATCTGTTTTCCAACAAGACCGGG GACAGGGAGCCTCAATGGAGAACTTATCTAAGAATGTTCTTGTTGGCAAAGGCCAGGTTACTGCCGTGACAGCTCTCAAG GAGCTTCGGAAAATTAGCAATCTTTTGTCGGAAATGTGA
Protein sequence (LotjaGi6g1v0236000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMPPSLVDPLLPSPSSSDSVPPRSAPENRRFGDLRGFQWRINLGVLPSASSASIDVLRRVTADCRRRYASLRRRLLVEP HVRKDGTNSPNAVVDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQGMLRRILLLWCLRHPECGYR QGMHELLAPLLYVLQVDLERLSEVRKLYEDQFTDRFDGLLCQENDLAYSFDFMKYPDQVENEIGSCGNAMKVNSLDELDP EIRTIVLLSDAYGAEGELGIVLSEKFMEHDGYCMFDALMKGYHGSVAMADFFSSSPVAGSHTGLPPVIEASTALYHLLSV VDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLDNLLLVWDEIFASDNSKKERSADDNIECGFGILNSPRGAFISAMAV AMLLHLRSSLLAAENPTTCLQRLLNFPENIDIEKLLEKAKSLQDLALSVDISSSSLLFVGSHHQSKFMSTRPVTFPSESV SPKTPLNVVPDSYWEEKWRVAHKDEELKKDGAENQVPTRKKGWTEKVKFSLRRTESDPSPSRIQNGKKEPKVSVRRSLLK DLCKALGSEEDTEKLQGPETLGQQDNLSEAVEVEEQGDGCNGDNNYSSDDRSPSGNSDSSTYFDPTSPPNEANDHEITLE KSSVGSNLSLGECSETSDTSPNDSLLPISHPPESIPQASGCNNDDAGNPGCHEISEASSNNEATKSGCNNDDAGNPQCNE ISDNGPNNSPSPISGPPENTPQTCNNDDSGNSVTHPKERKQNKFQWLWKFGRNNADVISEKVGGAAEATKPTNSSSSQSN RPAPASSTSNGHCSSVSYGGESVDQNVMGTLKNLGQSMLDHIQVIESVFQQDRGQGASMENLSKNVLVGKGQVTAVTALK ELRKISNLLSEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 15 | 851 | 837 | 2.0E-295 | – | |
| PANTHER | 15 | 851 | 837 | 2.0E-295 | – | |
| SMART | 17 | 414 | 398 | 8.1E-30 | ||
| ProSiteProfiles | 30 | 368 | 339 | 24.675 | ||
| SUPERFAMILY | 34 | 328 | 295 | 8.89E-28 | ||
| Gene3D | 99 | 183 | 85 | 3.1E-9 | – | |
| Pfam | 115 | 175 | 61 | 8.3E-13 | ||
| Pfam | 268 | 368 | 101 | 4.3E-10 | ||
| SUPERFAMILY | 304 | 443 | 140 | 2.12E-31 | ||
| Gene3D | 306 | 449 | 144 | 6.0E-32 | – | |
| MobiDBLite | 506 | 554 | 49 | - | – | |
| MobiDBLite | 506 | 535 | 30 | - | – | |
| MobiDBLite | 592 | 759 | 168 | - | – | |
| MobiDBLite | 600 | 667 | 68 | - | – | |
| MobiDBLite | 693 | 729 | 37 | - | – | |
| MobiDBLite | 783 | 818 | 36 | - | – | |
| MobiDBLite | 788 | 818 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0236000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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