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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236500 |
| Transcript ID | LotjaGi6g1v0236500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxysterol-binding protein; TAIR: AT5G57240.1 OSBP(oxysterol binding protein)-related protein 4C; Swiss-Prot: sp|Q9LVD4|ORP4C_ARATH Oxysterol-binding protein-related protein 4C; TrEMBL-Plants: tr|K7MBT5|K7MBT5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0236500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54648214..54654399) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGGCAAAGTTCATCTATATAAAGCAAGTGCACAAATTGCTCTATTAATTCCTCTGACGAGGCCACCACATCTCTCTC AATCTTCATCTACCGCTTCTTCCACTTTGAGCAACCACCTCATACAATTCCTTACTCTCTTCTGTGCTCTCTCTTTATCT CTCTCACACACAACCTGTGTTCTTAATTTCTTAACCTAGACATGGTACGTGCTTTAATCGATCTCTCTTCATAGTTTGTT TGTTTTCAACTTCTCATACATACACCTTTCTCTACGTTTATCCTACGTATATTTTCATTAGCCACATATACTTCGATTAT ATCATCTTATTCTATGTTTGCACTATAGATTATCATCCTTTCTATATTTTTTCTTGTTTTCTAATGTATGGCTGTGTTTT CTAGCATCTTAGAAAGTGGCTTTAATGCAAAATGAGTTGTCTTCCAACGCATTCATAAAAAACATAAAGAATCACAGATA GTTTGTTGTTTCTGGATATGGAATGAAGCAAATTGTTATAGAAATATTTTATGATTCTCTCTTCAATCAAAGCATGTATG TGAAAGCGAAACAAGAAAATTAAGATTAAAGAGGTTGATGTTTTTGGTTCACGGGCACAATGTCCAAGAATATTTTTCAA TGCCGAGTTGGCGAACCCTAGTTGAATTTGTTTTGTTTTGCTTTCAAATTCAATGTGCCCCACGTGCAACGAAAAGGATA TATATGTGATATATCAAACATCATTTGCAGAATTATATGCTTTTCTTCTTCTTCGTTCATGAACCAACAATTAAATCTCC AGATTCTGTACATCATTTGTACTTTTCCCACATAACAGAGTCTGGCAAGTCTGCATTGTGAATTTTGTGAAAAACTCTTT ATTATTCATCAAAATCCTTGTAAAATTTAGGGTTTGGGGGATTCTTTTCTTGTTTTCTAAATTTATTTATTTTTTTCGTA AAAAAATTGTTCAATCGAGATCTTTTACAATGTTAAAATAACCATGAATAGGATCTGTTTTTAATAAAAGTAATAAATAG AAGTTGTAATCAAACATGCTTTTAGTCATTTAAAGTTGAAAAAGTGTGAGCACTAAAAGAAAGAGTTTTTTGTTCACACT AAAAGAAAGAGTTGAGTATAGGACATTGTTTGGACTTATTTTCGTTAAGCTTTTAGTAGTGGTTTCTGATTTGGGAGAGA TCAAGCTACCCGTTGATAAGGGGTAGGAGAGAGGGGATCTGGACGCGTTGAAGGACTCCAAGTAGGCAAGGTCCCGGGAG GGGCTCCTGCAAGACACTCCGATGCTAAAGTCAGTGAGAGAAGTTGTAAGAATGGTGAGTTTGGAGAGAATACGTTACCT TTGAATGAGAGAGGTGCTTCCTTTATATATGAGAGGTTGAATTAGGGTTGGAGCCATGCAACGTCATGCATGGCTCGTAC AAGGGGACACAGCTCACCGTTGGATTACCTGTAGAGGAACAGTGATCCAATGGTTTGGGGGCCCCTACGGATCTGCACCG GCCAACCTACCCCTAGGGTGGTTGGCCTAGGTCAACCTCTATCTAGTGGGCCCCGGGTACCTTGTCCTTACCCTTGGCGG TGGGGCCTGTAAGTAGGGCGTTTCCAGACCCTCTGATCCGTCCCTTGATAGGGACGTTCCGTGGGGTCCAGCCCTGTCCT GGGTGTCCTACCCGGCCTTGGTCAGGGTTCCCGGAACAGTTTCCCATTTCCAAATGGCAAAACTAATGTATATAAAACAC GAAATCCAAATTCTAATGTATGCTAAGACGACAAATTGACCTTAATAAATCAGCCGTTGGTTTTAACTTTTTATGGCTGT AATGTATAGAACGCGGTTTTGACCTTAATTTATTGATTCCTTGCTGGCTTTGCCGGCTTCAATTTATGGTCAAATTAGGT CCAATTGGAGAGCATTGTTGTAGTCGTTAGCTGCTTTTACTTTACATAAAAAATATTAAATGATAGTAAGGGAAATCATT TATTTTCATTAATCACTATCTGTTCTTTTTGGAGAAATGATAGAACATGCACTTTTCTTTAATTTATGATTGTGAAAATT TTTTGTATTTAGTTCAGACACGAGAACATATTTCTCTTAGTTTTATTACATTTACATTTATACAAGAAAATAATAGCAAA AAAGTTTCAATGTACTCCTACTCCACAGTGCAAATTGAACATTAGGAAATGAAAATTACAAATCTGGCAACAACATTAGC TCTAGCGGTTTAGAAAATGTTAATATGAGAGGTGTGGTCGATTGTAGGTAAATAAGGAAGAGAAGAAAGAAAAGCAAATT ACACTCACAAGACCACAAACACTTGATAAGGAATCTGATTCAGAAGCTACTTACAATGCCCCTAATCTTTTGCAACGCGT CTTAAGTTTATTCAAGAATATTCGTCCAGGGTCTGATCTCACCCGCTTACAGGTAATACTGATTTATAACACTCATTTAC ACTACTCATGTATTATGTTGTCCTTTTATTGAAATAATGACACATATTCTATTATTAGTTGATATTTTTCCTTTTTTTTA AATTTAAAAATTGAAGAAAAATAATATTAATTAGAAGATTTGCTCCTATCTAGCGTTTGCCTACTTTGGGTTCTATCATT ATGGAGTATGGACTTTCTGACACCACCAACATGACCATTGCTTATTAAGTTATGTCCCACAGATTGTTTCCCCTACCCTA TTGACCAAATAAATGCCAGGAGTTTGTTTATTTATTGAAAAAAAGGGTACAAGGGTACCCAACTCATTACAAACAGACCA AACAAGTTGTACAGATTATGAGTCCAAAGTGCCAAACCCTGCAGTCCAAACTCAAAACAGCAGAAAAAGTACAGAGCATT GAAACATAAAATAGGTTCACTTTCAAAATAGGAGAAAAAAATAATACTACTATAAAGTGTGGATGCGTTTAAATGAATTG ACATTCTTATTGACTCTTTCATAAATAGTACCATTTGATTTATAAATATAATTATTCTTAAATTTTCACAAATTCTTACT TATAATATGATATGATTATATACTTATTATGTGCAAGTGTGACTAATAATAACGATTTTATTTTGCGATGAAATGTGTGA TACGTGTGACAATGAGAATTGCATGACCATGATGATGTGATGTTAGACACATTTATATTAAAATTTTGTGTTTATCTTTC TCCATAACTATCAAATAAGTGAGTTTTTCGTAGAAGAAAGATAAATGCAAAATTTCATATGACGCTATGATAATTCAACT CAGATACAATAAACACTCATCTAGTTGTAAACCTTGCTAGTGCTATTCGCAAATATAGTGCATATTTGAAAACTTGGTCG AAAACCACAGTGAATTGAAATCATGGCAGATAGAAGTAACTCTCCTTAGCTTTTACTTCTGTCTACCATGATTTTGAATT CACCGTAGTTTCCAAACGAGTTTTCTTCTATCAACCATGATTTTAATTCCATTGTGGTTTTCGACCAAGTTTCCAAAAAG GTAGGAAATGGAAAACATGATAGTACTCATAGTAGTATCATTTGGGTCACCGTTTTACAGGGAGTGATGAAAATGTTTGG CCTTACTTGCAGCTGCCACCATTGTTCAACTTACCAAAGTCACAACTTCAGTGCTATGGTGAATCAGTGTATTGCGCGGC TTCGGACATGCTAAGTGTGTGCAACAGAGGGCAGAGTCCATTGGATAGGTTCATATCAGTGGTGGCATGGTGCATATCCA CCACACGCCCTGCAACTTTTGGGGCTGCTCCTTATAATCCCATTCTTGGTGAGACACATCATGTTTCCAAAGGAAATCTT AATGTGTTACTTGAACAGGTACTTGCTTCCCAATTCTGCATTTGCCTAATGCTTCTTACCTAACTTTATTGCTAATGGAG TTACCGTGCTTTGAATTGTGTGTCACTGCCAATCCAAACACGCTATTCTTTTGGCTTGTTGAGTTTCCTTGATGTCCACT TCCAAGATAATTAGATTCTTGGTTTGCAAATGCCTGCAGGTTTCCCATCACCCTCCAGTAACTGCCCTGCATGCAACAGA TGAGAAGGAGAACATAGAAATGCTATGGTGTCAGCAACCTGTTCCAAAGTTTTATGGTACCTTCACCTTTTTCTTGGATC ATAAGTAATTCAATCAAACTGTTGTCATAACATCCTTCTTCAAATCCTAATTGTTGAACAATTGGTACAGCAAAAATCAG TAATTCAATAGTTAAATCGAGTGACCAGATTTCAACAAAGAATCAATGCAGGGGAAATATGATGCATTTGCTTGACTACA ATCAAATGTCTTGAAAGGGAAATATGAGAAGCATCTGTACTAGAACACTGTCATAAAATTGTCAAGTGCTGCATTAGTGC ATTTGATTATTTCTAGTCTCCAAAAAGAAAATTTTGCATTTTGACACAAAATTATTAGGAACTCTCAATTTCAGAGTTCA TCTAATCCTATATATCTTTCTGATTTTGAATCCAAAACCATGCAATACATTGCTTATTGTTAAGTTTAATTTGATCACAA TTTTCAATTTTGAATGATATCTTGGATTCTTAAATTCTTCACAAATGATCTAGAATAAGTATGCCAGTTACAACTGAAAA AAGTTCTAAATGTTGCTCCTTACAGAATGATATCAAGTTCTAAATGTTGCTCCTTACTGAAAAAAGTTGTGTAGATTAAT ATCTTTATCAAAAATTAAATATGCAGGCACATCAGTTGAAGCTCAAGTGCATGGTATACGTCGGTTGAAGCTCCTAAATC ATGGCGAAACATATGAAATGAATTGTCCTCACCTTCTGTTTAGAATTCTTCCAGTTCCTGGGGCTGATTGGGTTGGCACA GTTACTATAAGATGCCTAGAAACAGGTCTGGTAGCTGAGTTATCCTACAGATCAACTCATTCTTTTCTAGGTATTGGGGG AAATCATAAAGTGATCAAAGGGAAGATCCGTGACCCTTCATCTTTGAAAGTTCTATATGAAGTTGATGGTCATTGGGATA GGTATTATTTTCCTTCCAACCACATTCTGAACTTCTACTTTCTTTGGGTCATATATTTAGTAAAGGCAAAAATTATATAA AAATTGTGCGTTTGTGTAAACAGCTTTATTGAATGTTTAAGTCAATAAGCGCTTATGCGATAAGCTAATTTGAGAAGTTC AATGAAATAAACTGAAAATAGGTCATAGGTAAAACACTTCTTTATAAGTTTTTTTATATAAACTCTTCTAAACACTTAGG CTAAATAAAAAAAGTTCAAATAAACTCTTCCCAACAGGGCGTGATATATAACAATATAGAAGAGCTGAATATTTCTTAAA GTTAAGCTAAGACAAGCAAACATTAGATCCTGAAGAATCTGATTAATGGCAAGCTAAACATTTGATCAATTATTCACTAT TTAAGTGCCTAGATTATTTTCAAGAATTATATTTTCAAACCATATTACAGTTCTAATCCAAATCAATTTTCAGAACTGTG AAATTGAAGGATCCAAAAAATGGGATGGTTAGAGTCATATATGATGCAAAGGAAGTCATGTCAGGGCTCCAAGTTCCTAT TCTTAAAGATGCAGAGGTAACAGTCTATTCTCTGCCGCATTACACTTCCTTATGTTACTTCTTTATTTGTTTATGAATCA AGATCTTTCTGGCAAGGCCTGCAAAAGATGAATGTGACATGTTCTAGTCATGTTTTCCTGCATGTGACATGAGTTTCTTT TGTTGAATCAGAGTGTGTTGCCAACAGAATCAGCCCATGTTTGGAGTGAATTGAGTGAAGCTATTCTGAGAAAAGAGTGG GAGAAAGCAAGAGAAGCAAAGCATGCAGTGGAGGAAAAACAGAGGGAACTCATGACAGAAAGAGAAACAAAAGGAGAAAC TTGGAGTCCTAAGCATTTTATTGTATCTTACAGCAAAGAATCAGGGTGGGACTGTGTACCTACTCAAAAATGGGTTTCAG CAGCTCCCATTATAGCACAATGATTGTAGCTATTTAGTATGATAAGTTGATAACTTTATTTTTCATAGATATGTATCTAA GTAAGAAAAAGACAAGTTTTATGTGACTATCTAGTCAATAACAGAAAATTTTATGGTAAGAATTTTTCAATAAGAATATC TAGCTAGTGATGTCTATATTCTTTGC
CDS sequence (LotjaGi6g1v0236500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAATAAGGAAGAGAAGAAAGAAAAGCAAATTACACTCACAAGACCACAAACACTTGATAAGGAATCTGATTCAGA AGCTACTTACAATGCCCCTAATCTTTTGCAACGCGTCTTAAGTTTATTCAAGAATATTCGTCCAGGGTCTGATCTCACCC GCTTACAGCTGCCACCATTGTTCAACTTACCAAAGTCACAACTTCAGTGCTATGGTGAATCAGTGTATTGCGCGGCTTCG GACATGCTAAGTGTGTGCAACAGAGGGCAGAGTCCATTGGATAGGTTCATATCAGTGGTGGCATGGTGCATATCCACCAC ACGCCCTGCAACTTTTGGGGCTGCTCCTTATAATCCCATTCTTGGTGAGACACATCATGTTTCCAAAGGAAATCTTAATG TGTTACTTGAACAGGTTTCCCATCACCCTCCAGTAACTGCCCTGCATGCAACAGATGAGAAGGAGAACATAGAAATGCTA TGGTGTCAGCAACCTGTTCCAAAGTTTTATGGCACATCAGTTGAAGCTCAAGTGCATGGTATACGTCGGTTGAAGCTCCT AAATCATGGCGAAACATATGAAATGAATTGTCCTCACCTTCTGTTTAGAATTCTTCCAGTTCCTGGGGCTGATTGGGTTG GCACAGTTACTATAAGATGCCTAGAAACAGGTCTGGTAGCTGAGTTATCCTACAGATCAACTCATTCTTTTCTAGGTATT GGGGGAAATCATAAAGTGATCAAAGGGAAGATCCGTGACCCTTCATCTTTGAAAGTTCTATATGAAGTTGATGGTCATTG GGATAGAACTGTGAAATTGAAGGATCCAAAAAATGGGATGGTTAGAGTCATATATGATGCAAAGGAAGTCATGTCAGGGC TCCAAGTTCCTATTCTTAAAGATGCAGAGAGTGTGTTGCCAACAGAATCAGCCCATGTTTGGAGTGAATTGAGTGAAGCT ATTCTGAGAAAAGAGTGGGAGAAAGCAAGAGAAGCAAAGCATGCAGTGGAGGAAAAACAGAGGGAACTCATGACAGAAAG AGAAACAAAAGGAGAAACTTGGAGTCCTAAGCATTTTATTGTATCTTACAGCAAAGAATCAGGGTGGGACTGTGTACCTA CTCAAAAATGGGTTTCAGCAGCTCCCATTATAGCACAATGA
Protein sequence (LotjaGi6g1v0236500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNKEEKKEKQITLTRPQTLDKESDSEATYNAPNLLQRVLSLFKNIRPGSDLTRLQLPPLFNLPKSQLQCYGESVYCAAS DMLSVCNRGQSPLDRFISVVAWCISTTRPATFGAAPYNPILGETHHVSKGNLNVLLEQVSHHPPVTALHATDEKENIEML WCQQPVPKFYGTSVEAQVHGIRRLKLLNHGETYEMNCPHLLFRILPVPGADWVGTVTIRCLETGLVAELSYRSTHSFLGI GGNHKVIKGKIRDPSSLKVLYEVDGHWDRTVKLKDPKNGMVRVIYDAKEVMSGLQVPILKDAESVLPTESAHVWSELSEA ILRKEWEKAREAKHAVEEKQRELMTERETKGETWSPKHFIVSYSKESGWDCVPTQKWVSAAPIIAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 6 | 386 | 381 | 2.7E-200 | – | |
| PANTHER | 6 | 386 | 381 | 2.7E-200 | ||
| SUPERFAMILY | 38 | 371 | 334 | 3.4E-88 | ||
| Pfam | 42 | 316 | 275 | 1.0E-46 | ||
| Gene3D | 120 | 299 | 180 | 5.3E-32 | – | |
| ProSitePatterns | 137 | 147 | 11 | - | ||
| Gene3D | 306 | 378 | 73 | 2.4E-9 | – | |
| Coils | 329 | 349 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0236500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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