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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0238600 |
| Transcript ID | LotjaGi6g1v0238600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SE09|A0A151SE09_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0238600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54822738..54827341) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGTATCTCAATCAACTTCTGTGCAGGTGGGGGAGGAGTCGAAGACCCCAAGGCCAATTTTGAGGCTGAGTGGTGAAG GAAGCATGTTTGAAACACGCCCATGCTCTGATCAAGAGGAGCTATCTGATCCCTTGACCATCCGAAATTCTGAAGGCTTG GCAGTAGTAATCAGAGACAATTTGATGGGCTCACATCCTCGAATTGTTGGTACTCAATCAGGGCAAAGTTCTTCTTTTTC TACAACTAGCTCCAGATATGCGGCTGGGAGGAGAGCTATCAGGCAGAGAGTGCTTTCTCTGTTTGACTCAGTGGAAGATT CAGATGTGGTAAATTGCAACAGGGTCTTTTGGTTGCGGCATAGGGAAACTGAGGCAAGAAGGATGTGGGAGCTGGGGAAG AATCTGGGGGTGTGCTATGAAGGTAATGAGGAAGCAATGATAGCCAGACTCGTTGCTATGGAAGAAAGGGACGAGAAAGG AGGCAATGACAGCGAGGTGCCTCAGGTTGGAGGGGTTATTCAGCAGGTGAACCCATGAAGCTTCTAAGCTATAATTCACG CGGGGTTGGAAGTAGGATAAAAGTGAGGTCTATCAGGAACTTAATTCAGAAAGAGACGATTGACATCGCCTGCTTCCAGG AAACCAAAATGGGGAATTTGAGCCATTCTTCGTGTCAGCTATTGTGGGGTAATGAGGAGATGGAGTGGATCCACTCTCCT GCCGTTAATCTTGGGGGTGGACTCCTATGCATTTGGCGTAAAGGTTGCTTCTTTGTTGAAGAAGTCTCTTGCAACCCAAG ATGGATAGGGTTAAGAGGAAAACTGAAAGACAGATTGGAGGATTGTGTGATTGTGAATGTTTATGCACCGTGTACTTCTG AAGGGAAACGTCAGCTATGGGCTGAAATTTTAGCATGGAAACAACGAAATTCTGCTGGTATGTGGTGTGTAGTTGGCGAC TTCAACACTGTTAGGAAAACTAATGAGAGGAAAGGGGTTGGTGCTGATCTGAGCCAATTCAGAAGGGACTCTGAACTGTT TAATGATTTTATTGATTCCATGGAGATTCAAGATGTGCCTATGACAGGGAGGAAGTACACATGGGTAAGACCAAACGGAT CATCAATGAGCAGATTGGATCGATGCATGGTGTCCTTGGAGTGGCTCGATGTGTGGCCAAACAGCATTCAACATGTCTTG GATCGCGACTTATCTGACCATTGTCCCATTATTCTGAAGCAGCTGAATCAAGAATGGGGGCCCAAACCATTTAGGGTCCT CAACTGCTGGCATAGTGATCCTAGATTTGGGAAATATGTGGTGGATTGTTGGAAGGAATTGGAGGTAAGTGGAAGAGGGA CGCATGTTTTTAAGGAGAAATTAAAGCTATTAAAAGGCAAGCTGAAACAGTGGAATGTGGAGATATTTGGGGACTTGAAT GTAAAAAGAAAGGTGATTGTTGAAAAAATGAAGGCCCTGGACTTAAAAGCTGAGGAGAATACATTGTCAGATGAGGAAAT CATGGAGCGGAGGTCGCTAATGAGTGAATTATGGCATGTTGGGAATCTGAATGAATCTCTACTATGCCAAAAATCGCGAC TTAATTGGCTGAAAGATGGGGATGAAAATAGCAGGTTTTTCCATGGAATTGTCAGATGGAGGCAGCGGCGTAACTCCATC AATGGGTTGTCACTCAATGGTCAATGGGAGGAGGATCCAGGAGTAATTAAGGAAGGTATCAGAAGCTTTTTTGAACAGAA ATTTCAGGAATCAAATGGGGAGAATCCTAACCTTAATGGCGTCCATTTTAAACAACTTGATGATGCTGATAATGCATTTT TGACAGCAGAAATTGATATGGGAGAGATCAAAGCAGCAGTTTGGGCATGTGATAGCAATAAGAGTCCCGGACCGGATGGA TATAACTTTAAATTTCTCAAGGAGTTTTGGGGGTTGATCCAATCAGATGTGAAAGGAATGGTGGATGATTTTTTTAACAA AGGGAGATGGCCTAGAGGGACAAATAGCTCTTTCATCACCTTGATTCCTAAATGTGACTCTCCTCAAGGGTTAAATGAAT TTAGGCCAATCTCTTTAATTGGTTTTGCATACAAAATAGTGGCAAAAATCCTGGCAGATAGGATGAAAAAAGTACTGCAG AAGGTGATCGATGCAAATCAATTTGCTTTCCTTGGAGGTAGAGGGATGCTGGATAGTGTGATAATTGCGAACGAGGTTTT TCATGAAGCAAAAAATTCAAAACTACCTTCTCTTATCTTTAAGGTAGATTTTGAAAAGGCTTATGATTCTATTAGGTGGT CTTTCTTGGTGGACATGCTTCGGAGGCTCAATTTTGGAGAAAAGTGGATCAACTGGATTGAGGGCTGCTTGAAATCAACT TATGTATCTATTCTCGTTAATGGAAGTCCCACTACTGAGTTCAAAATGGAAAAGGGGATCCGTCAAGGGGATCCCCTTGC CCCATTCTTATTTCTGGTTGTTGCGGAGGGGTTGAATGGTTTACTTAAACAGGCAGTGGAAACCGGTAACTTCAAACCAT TCAGGGTCGGGACTGACAGTGGCGTTGATGTGGCCCTCCTCCAGTTTGCGGATGATGCTCTTTTCATGGGTGAGGCATCG GTCCAGAACGTGCTAACCTTGAAGTGTATCCTACGTTGCTTTGAATTAGTGTCAGGTATGAAGGTGAACTTTCATAAAAG CAAATTAGCAGGTATTGCGATTTCTCCTTCTGTCACTAATCGCTTTGCTGCCCTATTAAATTGTCGAGTCATGGAGGTCC CCTTTACTTATCTGGGGTTACCGGTGGGTGCTAATCCGAGACGTTTATCCACGTGGGATCCAATTGTGTGCAAGATCAGG TCTAAGCTCTCAAGCTGGAAGAGTAAGCAACTATCTCTAGGAGGGAGAATTTGTTTGGTAAAAAGTGTTTTAACAGCACT TCCCCTGTACTATATTTCTTTCTTCAGAATGCCAAAAGGAGTGTTCAAAAAATGTCAACAATTAATGATGAGATTCCTAT GGGGTGGCTCGGAGGAGGATCGGAAAATTGTTTGGGTGGGGTGGAACCAAATTTGTAAACCAAAATGTGAAGGGGGCCTT GGAGTGAAGGATCTGAAATGCTTCAACATTGCCCTATTGGGAAAATGGAGATGGCGCCTCCTACATGAAAAAGACAGCCT TTGGTGTAGAGTCCTGCTTGCTAAGTATGGTGATAAACGAAGTAAGAACGGATCAACATGGTGGAAGGATCTTCAATCAT CCTGTGTTGGGGCTGAAGCAGGGATGTGGTTTGAAAATGGCCTGTGCAGAAGGATTGGGGATGGATCCGACACCTTTTTC TGGTCTTAAAATTGGCATGGCAGAGGAAAATTTATGGAGGTATTCCCTGAACTGTACAGTATCTCAGAACAGAAGGAAAA TAGGCTGGCAGAAATGGGCTATTGGTCAAATGATACATGGATTTGGGACTTGCGTTGGACCTCTCAACTGATGAGTGAAA GTGTTCTGAAACTAGGGGTAATGGCTCAAATAATTTCATCTTATTCATTAGTAAAGGATAAGAAGGACTCTTGGGTTTGG GTCAAAGAAGGAGATGACATTTTCACTGTCAAATCTGCTTATGACTCTATAATTAATACAGAATCAGAGATTGATGATTT TACTTTTAAAGTGTTATGGAAGGCTTGGGCTCCCTCGAATGCTGCCGCTTTGGGATGGAGGGTGTTTCTCAATCGCATTC AAACAAAGGTAAATCTAATTAGAAGAAACATCCCAATCTCAGATCCTAACTGTCCATGGTGCGGGTTGTATGAAGAATCT GTTTCTCATGTACTGTTTGATTGCCTTTTTGCCTGGAAAGTCTGGTCTCAAGTTGTGAACTGGCTGGGATATTATTTTGT GTGTCCAGATCAACCCGTGGGGCATTTTAACCAATTTATAGGCTGCTGCTATTTGGCGAAGAGGGAAGGACTGGCTGCAA TATGGCTTGCGGTAACTTGGCAATTGTGGATTGCGAGGAACGCATTGATCTTTAGGGGAGAAAGATGGGAGGTCTCGAGA CTGTCTGAGGCGATTAAAGCAAAATCTTGGGCATGGCTTCGTGCCAAAAACAAGAATTTTATTCACTCTATGTTTGAATG GTATAATGAGCCTATAACTTGTCTTCGTGATTTATAATGGTGGGACTTTATCTACTCGGGCTTAATCACTTGGAAGGGAT TTGTGATTGCTGATTGGAATGGTTTCATGTTTGTGGTCTGAATTATGCAAGAATCAACTAAAGTTCTAGTGGTGCAGAAT TTGTTGTCAGAATACGTGATGGTTAAGAGGACTTGGAGTCTTTAGCAGCTTTGAAGGATCCATTTGCTTAGTGCAGAATT TATATTTTTTCCCCTTGGTGGTATGCTTTGGACTTAGTCTTTTGTACTCTTTTTCCTCACTAGGTTTTCTCAATGGGATT TCTCCTAGTGAGGTTTAATGAGGCAAATCTTTAAGTCTAACCTCCTAGGGGCTTTCTTTCATTTACAAGTTGAGATGTAA TTTTTCACCTAACTTACTGATGACCCGGGATTTAAGGCTATTTT
CDS sequence (LotjaGi6g1v0238600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTATTCCCTGAACTGTACAGTATCTCAGAACAGAAGGAAAATAGGCTGGCAGAAATGGGCTATTGGTCAAATGA TACATGGATTTGGGACTTGCGTTGGACCTCTCAACTGATGAGTGAAAGTGTTCTGAAACTAGGGGTAATGGCTCAAATAA TTTCATCTTATTCATTAGTAAAGGATAAGAAGGACTCTTGGGTTTGGGTCAAAGAAGGAGATGACATTTTCACTGTCAAA TCTGCTTATGACTCTATAATTAATACAGAATCAGAGATTGATGATTTTACTTTTAAAGTGTTATGGAAGGCTTGGGCTCC CTCGAATGCTGCCGCTTTGGGATGGAGGGTGTTTCTCAATCGCATTCAAACAAAGGTAAATCTAATTAGAAGAAACATCC CAATCTCAGATCCTAACTGTCCATGGTGCGGGTTGTATGAAGAATCTGTTTCTCATGTACTGTTTGATTGCCTTTTTGCC TGGAAAGTCTGGTCTCAAGTTGTGAACTGGCTGGGATATTATTTTGTGTGTCCAGATCAACCCGTGGGGCATTTTAACCA ATTTATAGGCTGCTGCTATTTGGCGAAGAGGGAAGGACTGGCTGCAATATGGCTTGCGGTAACTTGGCAATTGTGGATTG CGAGGAACGCATTGATCTTTAGGGGAGAAAGATGGGAGGTCTCGAGACTGTCTGAGGCGATTAAAGCAAAATCTTGGGCA TGGCTTCGTGCCAAAAACAAGAATTTTATTCACTCTATGTTTGAATGGTATAATGAGCCTATAACTTGTCTTCGTGATTT ATAA
Protein sequence (LotjaGi6g1v0238600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVFPELYSISEQKENRLAEMGYWSNDTWIWDLRWTSQLMSESVLKLGVMAQIISSYSLVKDKKDSWVWVKEGDDIFTVK SAYDSIINTESEIDDFTFKVLWKAWAPSNAAALGWRVFLNRIQTKVNLIRRNIPISDPNCPWCGLYEESVSHVLFDCLFA WKVWSQVVNWLGYYFVCPDQPVGHFNQFIGCCYLAKREGLAAIWLAVTWQLWIARNALIFRGERWEVSRLSEAIKAKSWA WLRAKNKNFIHSMFEWYNEPITCLRDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 242 | 217 | 2.0E-31 | – | |
| Pfam | 77 | 164 | 88 | 7.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0238600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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