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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0242700 |
| Transcript ID | LotjaGi6g1v0242700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT2G33720.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|O23659|Y2372_ARATH B3 domain-containing protein At2g33720; TrEMBL-Plants: tr|A0A1J7HN36|A0A1J7HN36_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0242700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55520881..55522403) extracted from Lotus japonicus Gifu genome v1.2.
TCCTACCGCAAGATCCATTCATGACCGTGCACCACTACCGGAGATCAAAAACATCCACTAGCTCAAATGTTCCACTGCTA AGATATTTTTAATAATTATGACGTAAATATATTGCAACAATAACAAATATACTCGTATCTCTCTTCTCTCTATATAAAGG CATGCATTACTGCAGGTCAAAATGGAACTTGTTAAAAAATCTAGCTATCATGCATCCCGGACGCACAGGCTCTCACAATG TTCCACGAGTAGAAAAGTATCACAAACCAACCACAATTTCTACAGAGTTATCACTGATTTCTACTAGCACCTTCATTAGC AACAACAACCACGGTGGTACAAGCAGAAGCCACTATAATTCTAGCGGTTCTAAGAGAAATAGGAAGAACACAACACCGTG GCAGAAAAATGGTAAAAAAACCCGCCACTAACAACGATGAAAGACAGTGCTGGGGGTGTTCAACATCACTTGAGCTTTAT GACAACCCATGGAAGATCAAGAAAGCCTTGACTTCGAGCGATCTTGGGAAGTTGAACCGGCTCTTGTTCGGGTCAAATTT GCTGCAGAATTTTATGGTGCCGGTGCTCGGTAGAGATGCTCAGAGAGACGCTGAGAGTGGAATGCGAACACCAGTTAGGG TTTGGGATGTTGACACCATGTCCATGCACCAGCTGGTTCTCAAGCGTTGGGCTTCTTCCAAGAACTACGTCTTGATTGGG AGATGGAACAGGGACTTTGTCAAGAGAAGGGTGTTGAAGAAAGGAGATGAGATTGGTCTTCAATGGGATTCTTATAGATC CTGCTTCAACTTCTCCGTGCTTAAGCGGATTGAGCAGACAAACAGTGACTTCAACCCCAAACCTACGTAAGTCAGAACAA TCTCATGACAAATGATGATCTACACACTTGATATTAGTTCTATTGGCTGATAATCATATGTTGGTTAAAAGGGGTTGTCT ATATAACTCATTATCGAAATTGGATTAAATCACTCATGGCATAGATGTACCAATCATATTGCAACATGTGTTCTTATATT ATCCACATCACTTAATTAGTCTCTTTTACTTTTCATTTTGATATTATTTATTTTATTAAATAATTTAATTGCAAAATAAC CTATATTTTTAGATAATAGTGTAGGACTCCTTTCTATAAAAAATCCTCAATCCCCATTTTCTTTCGCATCTTCTTCTCTA TCTTCTCCGGAAACAATCTCACAGCTCATAGGCAAAGTAGATGAGCATGGTCCGGTGGCGAATCTCCAACAGTTTGTAAT ATTTATTCATCCCAGTGCTTGATGGTGTTGATGAAATTTCATGTTTGATTTCACAATTGGGTCTGAAATTTGAGCTACTG GGTTTGAAGTTTCGTAAACCTAAAATTAGAAAATAGGTTCCATATGCTATTATCTAAAACTAGGGATTCTCAATTAAATA CGACATGGCCATGATTCATGACTTGAGATAATTTCACGTGGTTTTCCTCAATCCTCATTATTTTGTGCTTATTAGTAGTT TCT
CDS sequence (LotjaGi6g1v0242700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAAAAAACCCGCCACTAACAACGATGAAAGACAGTGCTGGGGGTGTTCAACATCACTTGAGCTTTATGACAACCC ATGGAAGATCAAGAAAGCCTTGACTTCGAGCGATCTTGGGAAGTTGAACCGGCTCTTGTTCGGGTCAAATTTGCTGCAGA ATTTTATGGTGCCGGTGCTCGGTAGAGATGCTCAGAGAGACGCTGAGAGTGGAATGCGAACACCAGTTAGGGTTTGGGAT GTTGACACCATGTCCATGCACCAGCTGGTTCTCAAGCGTTGGGCTTCTTCCAAGAACTACGTCTTGATTGGGAGATGGAA CAGGGACTTTGTCAAGAGAAGGGTGTTGAAGAAAGGAGATGAGATTGGTCTTCAATGGGATTCTTATAGATCCTGCTTCA ACTTCTCCGTGCTTAAGCGGATTGAGCAGACAAACAGTGACTTCAACCCCAAACCTACGTAA
Protein sequence (LotjaGi6g1v0242700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKKPATNNDERQCWGCSTSLELYDNPWKIKKALTSSDLGKLNRLLFGSNLLQNFMVPVLGRDAQRDAESGMRTPVRVWD VDTMSMHQLVLKRWASSKNYVLIGRWNRDFVKRRVLKKGDEIGLQWDSYRSCFNFSVLKRIEQTNSDFNPKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 142 | 135 | 3.2E-57 | – | |
| PANTHER | 8 | 142 | 135 | 3.2E-57 | – | |
| Gene3D | 26 | 150 | 125 | 3.9E-18 | ||
| SUPERFAMILY | 26 | 137 | 112 | 3.33E-9 | ||
| CDD | 28 | 139 | 112 | 4.88671E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0242700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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