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LotjaGi6g1v0244100.2

Overview

Field Value
Gene ID LotjaGi6g1v0244100
Transcript ID LotjaGi6g1v0244100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Choline-phosphate cytidylyltransferase; TAIR: AT4G15130.1 phosphorylcholine cytidylyltransferase2; Swiss-Prot: sp|F4JJE0|CCT2_ARATH Choline-phosphate cytidylyltransferase 2; TrEMBL-Plants: tr|I3T4S6|I3T4S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0244100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55685226..55689089) extracted from Lotus japonicus Gifu genome v1.2.

AGAAGTGATGGAAGATCAAGTGCAGTGTGAAGTTGGCAAAAAGGAAAACCCTGTTCGAGTATATGCTGATGGAATCTATG ATCTCTTTCACTTCGGCCATGCCCGTTGTCTCGAACAAGCCAAGAAATCGTAATTTCAATATTTCATCGTTTTTTGTCTT TTTCTCTCCTACCCATGTCCCAATTTTTCATTTTTCATCTGAAAAGATTCCGTTTTTATGCTTTTGAGTTCAATTCCATG TTTTTGGGTTGTACTTGTTACATGCCATGGTCTAAACTTGACTTACTACACTAACCCTCAGTTTAGTTCATGCTTGGAAA TTATTCTAGAATTGATTCTGAAGGCAAAATTGATTTTGGTGTGAAACTGATTTGAGTACCTGATTCTGTTGAAAGAGAAA TTAATAGTTTAATACAAGCATGCTATTAGTTAATTTCTCATGGTTTTGTGTGGCATGTTGAATTAGTCTACTATGTTTTT GGCTTTGTGCTGAGTCTATGAAATCTGCAAATTACTGTACTTGTTGTTTGAGGGAATTTCTTCATGTTATTGGAATGATT TGGTGTTTACTTTTAATTGAAGGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATGATGAGACAACCCACAAGTAT AAGGGCAAAACTGTTATGACCGAGAAGGAACGATATGAGTCTCTTCGCCACTGCAAGTTGGTTTTTTTCTTTCTCTTTTG GTCTTTTAATTTGGAGTCATTATTGATGATGTTACAATTCAGTTACAAGCTTTTATGTTTTAAGAGATTAGTGATTGCAT CAGGCACGGTAATAAGATTGAAGTCGGATGACTTGGATAGTTGGATTTGAAATTTAGTTGCTTTCTCTTTTAATTACTAC ACTCTGTTAGGCAAATAATTGCATGGTCTCCTATCATGATACTCTCATCTCTAGTACCATGATACTTCTCTCGACTAATT TCAGTAATAGGTCGATGCATTGTGTGACTCAACCATGAAAGTATACGAGTGAGATTATTATTTAGATAAGTCATGAATGT AAGCTTAGTTTCCATTTTTAAATCTAGTGTTTGTGGACTGAGATAGCTATTGGTTAACTAAGTACAATTATGCTACTTTG TAATGTCTAAGTTCTTTGATGCCTTTGTGGTTATAGAAATCTATGTTAATTTTTTCATCTTCTGTTGCTGATAATATTTT GTACTAGTTTCACACTGTAGCCATTTTCAAGTTTATTCTGAGCTAGTGTGAACAAAATATTAGTTTTTGATACCCTTATT TTATTTGTATATATGGCTGTGAACCTGTGTTGGGTTTTACTTAAAAACAAAATTAACTACAAAATGCTAAAAACATTATT TTTAATCATTTAAAAGCCCCAAGTTCTGTTTGATTTTGTTTACTCCTAAAATCTTACAAGTGGTTGAAATCTTCCATTGA ACATATATAAATCGCGTCCGTTTCTTTGGCCTATTTAAATAACAATAATAAAAGTCTTATCTCACTAAGTGAGGTCGGCT ATATGGATCACACCATGCCATGGAGCTCAATCATGAACCAGATTGTGAGGTCGGCTATATTATTGATAGTGAGATCATTT TTTTAACAGTATCTTCCCAAGTTCTTTTTGGCCTCCCTCTACCTCTCTTAATATGACTAAATATCATGTTATCAACCCTT CTCACAGTGCCTCCAGAGGTCTTCTTTGTAAATGCCCATACCACCTTGAGCGATTTTCCATCAGCTACTCCACAATAGGT GACACCTCAATATGTCCTCTTATCCGCTCATTGTTTATCTTATTCTTTCTAGTGTGACCACCTATCCATCTTAACATTCT CATTTCTGCTACTCCAACTGTTTGGCCTATTTAAATTGCATTTTCTATTCACCTAATTTTCACTGTGGCATACTTGTATT AGAATGCTTGAAGCAGTTCAATTCTTACTGCAGGTGGGTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACTATGG AGTTCCTTGACAAGCATCAGATTGACTATGTCGCACATGATTCTCTTCCGTAAGGTTAACCAGTCCCAGGCTAGCTGTTT TTTATTGTTTATTTCCTGTATTTGATCAAGGCTCAAAACTAGTGAAGTCTTTGATGAAAAACTATCAACACCAGAATATA GTAACATTAAGTCAAGTGGACTCAGTGACTTGCTTGCAGCTGCTGTATGATAAGTTTAGGATTCTTAATCTGTAAGTATG GATATGAATATGATACAGGACATGGATTCAACATGGACCTAAGGGTATGGCATATAGGAGTACGGGACATGACAGGCCTG GGACATGTTACATAAGGAAACCCCAGAATTATGTATTGTGTTCATTATACTCTTATTTCCTAAAATAAATAAAACTAACC CTTAAAAGTGCTATTGAATTTTTTTGTGTGGAAAATGTAGCTGTTTAGAAGGAAAAGCAGATGACGAGTTCTATTTTTTC GTTAAAAAGAAACTTACATAAAATATATGGGTATTATGTGATAAGGGTAGGAGGAGATTGTCTGTGGCAGCTTAAGAGAT AAAGGAGAAAAGTTCTGTGCAATTTTTTTATTGAGGTTGTTAGAGTATAAAAATGTCTTATACATATTGGTCATACATAT CTTAAGAGTAATCCAGGATAATATATTTAATCTATCTAAAGGATTTTGCAATATGGATGGGTTTCTTTGCTTCACTACTT ATACTATTCTGTTAGGACCCCATTGCAAGGTATGGGACTTGAGTCCCACATGGGAAGTATGGGATTCTAATGTGGGGTTT ATAAGGCCTTGGGCTCTCCAACTACAACAGCTAGCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCAATGGTATCAGAG CCTTCCACCATGTCTCTGAGCTGCAAACGAGCGGCGCGGGTGGTGACGCCGGCATTGCCGTGTTCACCCGGGACTAGTCG TGGGGCTAGTGCACAGCCAGCCCGCGTGGGCGCCGGGGCTGCGGAGCGTGGTGGGATGTTAGGACCCCATTGCAAGGTAT GGGACTTGAGTCCCACATTGGAAGTATGGGATTCTAATGTGGGGTTTATAAGGCCTTGGGCTCTCCAACTACAACAGCTA GCTTTTGTGGTGTGGTTCTCCCAAGGTTCTTATCATATTCTCTTTTCTCTTGGTTGCTTAATAACTCCCCTATTTCTGTG TGACGCCGTTCTCCTTGTGTTCTAACTGAACTTATTCTGGCTGATGCTTTCTTCATTCATGTTCTTATATATTGTCATAT ACATTAATACTTCCTTCCTTATTCTATTATCATAGCTATGCTGATACAAGTGGAGCTGGAAATGATGTCTATGAATTTGT AAGTACGAGAAATAGCACTATCTTGCAATTTAGTTTCATATAATTTAATGTGCCCCCTGGTCGTGGCATAACTCCAAGTC TCCAACTCTGATTTGCCTTAGCTTGATGAATTTTTGTCATTTAATTTTCCCCCTCACTTTCCGCTTTATCCTTTGGCTAT GTCATTCTATATTTTGACTTAACACTACTTGTAAATATCTCAAAATTTTCAGCTTCCATTGATGATATGTGTATTAATTT TTTTATATAGGTTAAGTCTGTTGGAAAATTTAAGGAAACCAAGCGGACTGAAGGAATTTCTACTTCTGATATCATAATGA GAATTATCAAAGATTATAACCAGTATGTAATGCGTAATTTGGACCGTGGTTATTCAAGAAAGGATCTAGGTGTCAGCTAT GTCAAGGTTTGTTCTTTTGATCAGCAACTTAGTTCTGCATGCTCTCATTTTTCGTGTTTTATTAATTACTTTCCTTATTT GTTTGCTCTCTTGCTTAGTGGTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0244100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGATCAAGTGCAGTGTGAAGTTGGCAAAAAGGAAAACCCTGTTCGAGTATATGCTGATGGAATCTATGATCTCTT TCACTTCGGCCATGCCCGTTGTCTCGAACAAGCCAAGAAATCGTTTCCAAACACTTATCTCCTTGTTGGATGCTGCAATG ATGAGACAACCCACAAGTATAAGGGCAAAACTGTTATGACCGAGAAGGAACGATATGAGTCTCTTCGCCACTGCAAGTGG GTTGATGAAGTTATTCCAGATGCGCCATGGGTAATCACTATGGAGTTCCTTGACAAGCATCAGATTGACTATGTCGCACA TGATTCTCTTCCCTATGCTGATACAAGTGGAGCTGGAAATGATGTCTATGAATTTGTTAAGTCTGTTGGAAAATTTAAGG AAACCAAGCGGACTGAAGGAATTTCTACTTCTGATATCATAATGAGAATTATCAAAGATTATAACCAGTATGTAATGCGT AATTTGGACCGTGGTTATTCAAGAAAGGATCTAGGTGTCAGCTATGTCAAGTGGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0244100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDQVQCEVGKKENPVRVYADGIYDLFHFGHARCLEQAKKSFPNTYLLVGCCNDETTHKYKGKTVMTEKERYESLRHCKW VDEVIPDAPWVITMEFLDKHQIDYVAHDSLPYADTSGAGNDVYEFVKSVGKFKETKRTEGISTSDIIMRIIKDYNQYVMR NLDRGYSRKDLGVSYVKW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.620
1 178 178 3.6E-84
IPR014729
PANTHER
PTHR10739
8 177 170 4.6E-115 –
PANTHER
PTHR10739:SF47
8 177 170 4.6E-115 –
CDD
cd02174
14 165 152 1.26591E-91
IPR041723
SUPERFAMILY
SSF52374
17 149 133 2.88E-26 –
TIGRFAM
TIGR00125
17 84 68 1.7E-21
IPR004821
Pfam
PF01467
19 148 130 2.5E-34
IPR004821

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0244100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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