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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0245900 |
| Transcript ID | LotjaGi6g1v0245900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G17370.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8WV16|DCAF4_HUMAN DDB1- and CUL4-associated factor 4; TrEMBL-Plants: tr|A0A072VGT0|A0A072VGT0_MEDTR Transducin/WD-like repeat-protein; Found in the gene: LotjaGi6g1v0245900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55816271..55823474) extracted from Lotus japonicus Gifu genome v1.2.
CACTCTCCGCCCTAATACTCTTCCGGCGCCGCGTGTTTCCTCCTCCTCACCACCACCAAACCGCACGCTCTTACCTCCGG CGCCGACATGCCACCGCCACCAGGTAAATCAACACAATCCATTACATACGCATGTGTCTCCAAAACTGTCTTTGTTTGTT AATTTTCACCTGTCAATCAATCAATCAACTATAGCGGCAATAGACTAATGATTTCTGTTGAAACAGAGCTTCCAGGGTTC TACTATGACCCAGAGAAGAACAGGTACTTCCCCATCAAAGGTCCAATCCCTGGTTCTTCTTCTTCTTCAAAGCCTAAGAC CAAAACCACTGACCTAAATTCATCACAACCCTCTTCCTCTAAGGTATCTGTAATGTCTGAATGAATTTGCCCCGTTTGGA AAAACGGCTTAATTATGCGCTTATGGTCATAAGCAACCATAAAGGCGTTTATTCATAAGCTATTTTTAAAAATTTATTAA AATAAATTGAAAATAAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATCATGAGTAGCTTATGAAAATAAGCATAA GCTCTCTCAAACACTTACACAAGCGCTTATGCTATCAGATAAGCTCAAATAAGCTCTTCCAAACAGGGCCTTTATTTATT GGTTATTTGATTTTTCACATGATGCATTCATTTGAACTTTGAATTTTTATTGATTGTAGTTACAGCAGAAGAGTAGGAGT AGTTATTGTTGGAAGGTTAGGAACAGAACTACTTCTAATCTGCTTCAGGGTAGAGAGTTAGGTGGTCATCATGTTAGTGC CTCCCATAGCTTCAGTGAGGAGTTCAGGAAAATGCAAGCATCTCAACCCGCTGTACGTTGATTTCTTTAACGGTTTTCGC TTACATTTGTTTTGCTAAGGGGTTTTTGAGTCTAACCTAGGATTGGGGTTTTCAGGTGTGGAAGTACCAGGGAACTGATA AGATCGGTATTAGTGCTTTGGAGCACATGAAAGTTGATGTAAAGACGGCAGAGGGTCGAGTTGAAACTGATGTTTTATTG ACTGGCAGCATAAATGGCACGCTGAGGTAACTTATACTTTTCCCCCATTTGCATTTGTGCTTGTTTGCATTTTCTTACAA ATTTGAGGATGTTGGGTAGAATATCTTTCGACTTATTTGCTTGAAAAGGGGTGGGAAAATGAAAATAACTTACTATTATA TCCTTACAACAAATGAAGGAAAGGAAGCAACACAAACCTCGACAACATAAAAAAGCTATTTAACTGTGGTTTTTAGTGCT GGTAACATTTAGTTGTTAGTGATAACATATGTAAAGAGACTTTTGAATTAAAAAAAAAAATTGAGGATAGTTTAGTGATT AGTCAATACAATCAAATAATTTTAAGCCATTTTCATCATCTCTATGTCCTCCCATTTTGGGAAAGGAAGCAAAATTGGGT GGAGAGGGATTTTTGCCCCCATTATTTCCCCTCCCCTCCGTTCTCTATCAGTCAAACAGTATGAAAGTGACAACTAATAC CCATATACCTCAATGTGTTATCAGTACTTGATGATCCTTCAAATTGATTGGATTATACTAGTTTCACTTGAGCCTAAAAC CAAGTTGACTTGTTAATTGATTCTTGTGAAGTTTGTTGTATAATGTTGATTACATTTACTAGTTGTTTCTTGTGAAGTTT GGAACTTGCAGTTTTTGTGAAGTTGGAAGGGTTGGGCAAAATTTTGACAGTGGTGTAACGTGGATGCCAGATCATGTGAA GAATTATGTTGGAGGGAAAGCAGATGAGCGTTATGAGGTGCCAGGGCCAGTTTCCAGACCTAATGGAGCTTCACTGATTA TGTCCTCAAGAGTATCCTGTATAAGATTGGGTTCAAAGTGCTCTTCCACTGCTGTGAATGATGATCCTATTGTTGGACAT GCGTTGTATCCTTTTATTTATTTATTGTTAATTTCTTTGTTATTGCTTCATAAACACTTTAAATATATACATTGGATCAT GCATGTATGGATTGATCAAGGTTAGAAGATGAAGTCATATAATAACCTTTAAGTGACTTCTAATCATGGTCACCATATGA GGTTATCTCTCATGATAAAGTATAGTGGCCAGGTTTATTTTTAACATACTTGTGTAAATCTCTATCATTGATATTGGGAG ATCCAAATATACTTGTTTATGATAAAAGTTTGAAGTGAAGTATCTTAACATGGCAAATAGATTTACTACTTTGGGGTCAG AGACATCAGGTGGATCACTTTTTACTCTTGGTCTTGTTGAACCATTAGATCTTGGACCAAGAATACTGAACACATGGAGC AGACTGGAGGAAATTGCTTCCTTCAAGTGTACCCTTTGGACAGCAGAATATGATTATAATAGACATCGGGCTTCAATAGG CAAGTTATATACTGATCTCCTTCCTCTCTCGTCCCTCCCTCTCCCACACACACAGAAACACATACATGCTTAAATTCTCT TGCTTATGCTATGCCAAGTAATGTTAAATTCAAATGCAGCGCACGAGTTGTACAGAATGTGTTTAAAAGTTAATATTAAC TCATGGCCATTCAGATTTAGGGTATCTCATGTTCTCTTGTTTGCACTTCCCGTTATATATTTCAACGTAGTTTTTATTAT TACCAATTGCATCCTCAAGGAAATTTTTTTAAGCCATAACATGAATCCAAACTTGTTACCAAGTTTAGCATGAATTCCAG ATTATCGAATACAATATCTATTTAAGTTCACTGCATGGGTGAACTATATTTCGGCATTGTTCGCCTCATGCTTATAGAAA ATACTATTCCTAATACCTCAAATCTGTCCACTATGAGTTTTTGCTAATAAAATTTAGCTACATGGAATGTTCTAGTGTTT GGCTTTAGTCTCTATCCTGCATATTGCTTCTACTTATCATGTATCAGGTTATGATAATGAAAAATGAGCCATACATAAAT GACTCAATAACTAGAGGTCTTGGTAGTTCATAAAGATGAGAATTGTGACATAATATATGAGCAAATTTTTTTACATTACA GGCTTTTGTCCCTGTTAATTTCATATCTGATCTTTTGTGAATTATTCATTTGTGTTTTTCTTTGTCTTTCTTAGGTACTA ATGTGGGAGGTGCTTTGGTGGATCTTGAAACTAGGAAGACGTCATGGTTTTTAACTTGTAAAAGTGATGTTTTTGCTCAG CAGATAGTTGATTCAGTAAGTTATTCTCATTTTATTAAAAATTTGTGAGTTTTCCCTAGCAAAAGGCCACCCAGCACTTG GTATTTTATATTATCCATGTTCTCATTCAAATAAATAATTACATATTAGAAAAACATACATTTTCATCATGTTTTCATGA AAATGTTATTTTGAGTTTATTAACTAATATGAACTGGAACATTTCGTAGTGTGCAAAACGGGTAGCATTTGTTTCATGGA TATCATGTCATTAATCACCTGCACTGTTGTTACAAGAACATCAATAACCAAGCCTTTGTCCCGCTGGAGGCATTTGACTA CATCTATATGAGTCAAACGAGCGCTCAAAGCTCTGTCATGTATTAAGTTCACAAATAGATCATTCATCTCTAAACCTCTC TTCATACATCTCTAAACCTCTCTTCATAGTCTAGCCTATATTTTTCCTTGTTTTTGTTCTATATCCCTAAAAATTGGGTT ATCTCCACTTGGTCAGCATTTCTCATTGCTGCTTATACGAGTTTATTGGGCTATCGTGCACTTGGTCAGCTTTTCTCATC GAAGTTTCTATGAGTTTCCTCCATATATGTCCAAACCATATAAGACGAGACTTTACTATCATTTTTACAATGGGATCTTC CCCATCTTTCTATCTAGTGGATGCATTCCTAATCCTATCATTTCCTGTAAGCACTCATCAATGATAATATTCTTATCTTT ACAACGCTAAACTGGACTCTTTCCTGTTTAACATTCAGTCTCACTCTCACATAAAATTGGAAGTCTTATAACTGTGCAAT AAAATTTTCCTTTAAATCGCAATGTTGTTATTCTTCTTAAAAACATCAGAAGCAAAGGCAGAATTATTTAATTTTTAAAG ACTCATTTTGGAAAAGGCATTATAATAGGGTTCAAAGGGAATTGCTTTGTTGGATGTCAGAAAAACATCACTCCACTTTT AGCAATTAGGTACTGTATTCACATAAAGGCAGATGACCCACAGTCCCACACTAAACTTCTCTTCAGAGGCTTACTAAAAG GATGAAGCCATGTATTGGTCATATTTCTAGGACTGAGACATGGAGACAAGCAATTGTTTCTTGGCTCATTAAGTTAAGAA TTTCTTTTTAAAAATAAAGAGAGAATCGATTTAGGCTAGCTGGGAGCACACATTATGCTTCATCCTGCATACCGCAGCCT TTTTACATTTTCTCTCTTAGGTGCCTACCCATTTCCCTCTCCTTCTGTGCCGATGCACCAACCAATATTTTCTCCCTACT ATTTTTCAACAGTTTGGAACAATGCTTGTATGTCAGATTCTGCAATTTTGCTAAATTAAGTAAAAAAGTTAATTTGAGGT TCAATAATCAATGGTGTATTTTGGCAGGGGGTCAATGCGTGTATTCTCATGATGCTTTTTTGTCCTTAGAGATGGGATCT TTGGTGCATAACTCATGGTTTTTTATTTAAGGGAGCCTTCCTGATTTGCTGAGGGATTTGGGAATTAATTGCACTGATGA TCCCATTTATTTTTCCTTTGTGTTCATCCTTTTTTCAAGAGAATATTTTATCTACCTTTACCTTTTTACTTGTATAATTG TATTCCATATTCCTTTCTTCTCTTTAATAATTTTTTTATTTTGTAAAATGAAATGTGCTAGTGGATGGTTTTTGTCATTT TTTGTTAGCTTTTTCTAACAAAACTGTCATCATTTTGTCCATATTACAAGGTTATGATTCGTTAAATATTTAACTCTATT TGTTCACCGTGGCAGGGAAATGTGATTTTATGTGGACTTAGAAATGGGGCCATTGTCACTGCAGATTTTCGTGCGAAAAG AGAGAGACATAAGCATTTGATATCTAATACATCTTCAAATAAGAAAGTTGGAAGTTCTAATAAAGAATGGTTCAAGGTAT TTTCTTTATAAAGTTCAAATTGATTGTTAAGTAAAACTATATAGGTCTAATGCTTTACTCATAAATATTGCCAAGGCAAT TGCAACTTGTATTTTCATGTATCAACTAGTATAATTTTTGCACTTGTATTCACAGCATTTAAACTAAGGACTGAATTTAA AAAAAAAACTAACGGCAGCCTGGTGCACAAAGCTCCCGCATATGCAGGGTCCAGGAAGGAGTCCCATCATTGGGTGAAAC TGGAAGAACTATGCAGACAAGTTTTTCATACCCCAAATGGCCTTAAAAATATAGAGCCCATTCCCATTTGGCTGTATAAA ATTTTCACTTCCATCATTTTTATTATTTAATGTCCTTTAGTAGTTTCTTCTGCATTTTGTGCATCCTAGTTTTAGCGCCA GTATAAGTTTCTGATCTAGTCGATCTTGTTATTTTTTGTGCCATAATGGTACTCTGGAATCTTCAGTGAGTGATGATTCA TTTTGTGAATGTCGTTTGCACTATTAGCTATAGCTATTGTTGATATGCTTACGTCTGTCCCCCTTGCAGCTCAATGGAAA CATATATCCTTCTCATACCATTTGGATGCCTTCATCTATATCCAGGTTAGTCAGCTATTTCCTTGCCAGTTGTCAACTTA TACATTGATTTGAGTTTTATTGATTTTGACCAATTATTTTCTGTCCTTTTTATTTGTGGGTTTGATAATAGCTTGGTGTC ACTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCCATGGATGGATCGGTTAGTTTGTTCTTAAGAAAACTAGTACCTA TTTTTAGCATATGATACTGATAATTTGTAGCATTATCTCATGTTTAGGCATCATTGTTCCTTTTACTCAAAATTGAAGAG AAAATATAAGTATTCGAAGTGTACAAACTAAGTTAAATAGATCCTCTGTAATTGAATTTCCTTTTTTCCCAGGAGATTAG CTTGACTTAATCCTCTTGGACTTGCATCATAGAGATAATGACCAATGAAGGCATTAGAAACACAAACCAATTCCTTGCAC CATATCACTCTTTTTGATGGAACTCCTTTTATGCAACTTGAATTGACTACATGATGAAAGAAAAATGTTTACAAAAATAA TCTTGATAGCAACCATTTCTTGCAGAATTCAAATAATGAGAGAACTGCTTAATTACTTGTTCTTTTACTTTTTAGATAAG ACTCTATGATCGCCGCCTGCTCCAGAGGGGTGCTGTCCAATCTTATGAAGGGCATGTGAATTCTCATACATGTATACAGC TTGGTGTTGATCCATCTGAGAGATTTGTTATGTCAGGTGGGTGTTATTTCACTTATGTTATTTATTTAGCATCCTAGTTT GAAAACTCTGACTCAAATCTTCTCAGGAGGGGAGGATTGCAAGCTACGGTTATGGAGCATCAAGTCTGGCGAGCTTCTTT TTGAAGATAAGTTCTCAGATTCAGTTCTCTCTACCGTGTGCCATCAAACATGCAAAAGGAGTGAGCACCATTTACTTTTG ACCTTTCTACTTTCAGTTTTATAAATTTCCTTGTTTTTTGTCATCAGCCACTTTTAGGCTTTGGTTTTACTGGTTACTAA CATTGAAGTGTTATTATTTGGCTGTGTAGCTTTTAAAGCAGATGAAGGAAATCAATACAAGCAGGACTCTTCTTTGGGTG CATGGCTTGGATCACATGAAGGACTATTTTATATGCATTGGTTATGAGTGTGAAGGGTTGAGGTTTAGTACCAATAGGTA TAGCTGCTAACTTTTCAAGGTGAATAGGTCTACTTGCTAAGGACATAATGGAAATGGAAGTAAGTTTCTGTACTGCCTGG TTGGTCTTGGTGTTAGCATTTAGGTGATCAAATAACTTGTGAATATGCTGCTGATACAGGTGACTAGTTACTTGGAGATT AGAGCTACCATTTATATTTGCACCATAGCACAGGGGACTAGTTACTTTCTAGATAGGGTTATTTAATATTAACACACACA GTTCCCTATTCAAATACTGGTATCTAAAACAAATGGGTTGAATACAAATGTATCCAGTGTTTTTTGTCAGTTTTTATTTA TTTA
CDS sequence (LotjaGi6g1v0245900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCGCCACCAGAGCTTCCAGGGTTCTACTATGACCCAGAGAAGAACAGGTACTTCCCCATCAAAGGTCCAATCCC TGGTTCTTCTTCTTCTTCAAAGCCTAAGACCAAAACCACTGACCTAAATTCATCACAACCCTCTTCCTCTAAGTTACAGC AGAAGAGTAGGAGTAGTTATTGTTGGAAGGTTAGGAACAGAACTACTTCTAATCTGCTTCAGGGTAGAGAGTTAGGTGGT CATCATGTTAGTGCCTCCCATAGCTTCAGTGAGGAGTTCAGGAAAATGCAAGCATCTCAACCCGCTGTGTGGAAGTACCA GGGAACTGATAAGATCGGTATTAGTGCTTTGGAGCACATGAAAGTTGATGTAAAGACGGCAGAGGGTCGAGTTGAAACTG ATGTTTTATTGACTGGCAGCATAAATGGCACGCTGAGTTTTTGTGAAGTTGGAAGGGTTGGGCAAAATTTTGACAGTGGT GTAACGTGGATGCCAGATCATGTGAAGAATTATGTTGGAGGGAAAGCAGATGAGCGTTATGAGGTGCCAGGGCCAGTTTC CAGACCTAATGGAGCTTCACTGATTATGTCCTCAAGAGTATCCTGTATAAGATTGGGTTCAAAGTGCTCTTCCACTGCTG TGAATGATGATCCTATTGTTGGACATGCGTTATTTACTACTTTGGGGTCAGAGACATCAGGTGGATCACTTTTTACTCTT GGTCTTGTTGAACCATTAGATCTTGGACCAAGAATACTGAACACATGGAGCAGACTGGAGGAAATTGCTTCCTTCAAGTG TACCCTTTGGACAGCAGAATATGATTATAATAGACATCGGGCTTCAATAGGTACTAATGTGGGAGGTGCTTTGGTGGATC TTGAAACTAGGAAGACGTCATGGTTTTTAACTTGTAAAAGTGATGTTTTTGCTCAGCAGATAGTTGATTCAGGAAATGTG ATTTTATGTGGACTTAGAAATGGGGCCATTGTCACTGCAGATTTTCGTGCGAAAAGAGAGAGACATAAGCATTTGATATC TAATACATCTTCAAATAAGAAAGTTGGAAGTTCTAATAAAGAATGGTTCAAGCTCAATGGAAACATATATCCTTCTCATA CCATTTGGATGCCTTCATCTATATCCAGCTTGGTGTCACTTCAGTTTGATGATCAGTACTTCTTGGCAAGCTCCATGGAT GGATCGATAAGACTCTATGATCGCCGCCTGCTCCAGAGGGGTGCTGTCCAATCTTATGAAGGGCATGTGAATTCTCATAC ATGTATACAGCTTGGTGTTGATCCATCTGAGAGATTTGTTATGTCAGGATTGCAAGCTACGGTTATGGAGCATCAAGTCT GGCGAGCTTCTTTTTGA
Protein sequence (LotjaGi6g1v0245900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPPPELPGFYYDPEKNRYFPIKGPIPGSSSSSKPKTKTTDLNSSQPSSSKLQQKSRSSYCWKVRNRTTSNLLQGRELGG HHVSASHSFSEEFRKMQASQPAVWKYQGTDKIGISALEHMKVDVKTAEGRVETDVLLTGSINGTLSFCEVGRVGQNFDSG VTWMPDHVKNYVGGKADERYEVPGPVSRPNGASLIMSSRVSCIRLGSKCSSTAVNDDPIVGHALFTTLGSETSGGSLFTL GLVEPLDLGPRILNTWSRLEEIASFKCTLWTAEYDYNRHRASIGTNVGGALVDLETRKTSWFLTCKSDVFAQQIVDSGNV ILCGLRNGAIVTADFRAKRERHKHLISNTSSNKKVGSSNKEWFKLNGNIYPSHTIWMPSSISSLVSLQFDDQYFLASSMD GSIRLYDRRLLQRGAVQSYEGHVNSHTCIQLGVDPSERFVMSGLQATVMEHQVWRASF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 59 | 59 | - | – | |
| PANTHER | 8 | 443 | 436 | 3.5E-121 | – | |
| PANTHER | 8 | 443 | 436 | 3.5E-121 | – | |
| MobiDBLite | 26 | 59 | 34 | - | – | |
| SUPERFAMILY | 135 | 443 | 309 | 2.82E-11 | ||
| Gene3D | 290 | 456 | 167 | 7.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0245900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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