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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0247000 |
| Transcript ID | LotjaGi6g1v0247000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Purine permease-related family protein; TAIR: AT1G30840.1 purine permease 4; Swiss-Prot: sp|Q9SY29|PUP4_ARATH Probable purine permease 4; TrEMBL-Plants: tr|A0A072V6T6|A0A072V6T6_MEDTR Triose-phosphate transporter family protein; Found in the gene: LotjaGi6g1v0247000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55931636..55933305) extracted from Lotus japonicus Gifu genome v1.2.
GGATTAATCATTCTTGTGGCCAGATATGTAATTACCCTGACTTCACACAATATCAGCTTATGACTAACTAACAGAGAGAT CTACTCTGCAAATCAAATCTCTCTCCACTATAAAGTATAAACCTCTCTTCCATTTCCATGGCACAAGCCCCACCAAATCC AATTCATCATCAATCTCTCAGCAGCATGGCCCCTCCCAAGACCAACGAAAACGACATTGAAATTGAATCCACTGATCATG AAAGCAGAGCATTTCAATCACTTCCAAATCCCCCATTATCCATGGCCAACAACAAAAAGCACCTGAAAGAAGAAGATCAA AAGTCCTTCACTAACAAGAGGTACATACCCCTTTTGATCATCAATTACCTAATGCTCTTTGTTGGTTCCCTCTCTGGTAG TTTGCTATCCAAGTACTATTTCATCCACAAAGGTTCAAGCAAATGGGTCTCAACTTGGGTCCAATGTGCAGGCTTTCCCC TTCTAATCATCCCAATTTTTCTCCTTTATCCTCTCAATTTAACCAAGAGAAAACCCTTCACTGATTTCACCCCAAGGTTG TTAACTCTATCAATTTTTGTTGGTTTCATGTTAGGGGTTAACAATCTTTTAATCTCATGGGGGGTTGCATATCTCCCTGT CTCAACCTCAAGCCTTCTGTTATCATCTCAGCTTGTTTTCAACCTCATCCTCTCTGCCATCATTGTGAAACACAAAATCA CATTTTCTAATCTCAACACTGTGATCCTTCTCACTTTAAGCTCCATCATCCTTGCATTGAATTCCAGCAATGAAAAACCA GAGGGGGTCACTAGAAAAAATTACTTTGTTGGATTCTTCTGCACCATTGGTGCAGGGTTGCTGTTTTCTCTGTATTTGCC AGTGGCGGAGAAGATTTACAAGAAGGTTTACTGCTATGAAATGGTGATTGAAATGCAGCTTGTGATGGAGATTGCAGCAA CAGCATTGGCTACATTGGGAATGGCAATTGATGGTGGATTTTCTCAGATGAAGGAAGAGGGACAGAGATTGTTTGATAAA GGGCCCAGAGTTTACATTGTGACTGTGATGGCTAATGTGGTGGCATGGCAACTCTGTTTCATGGGAACTGCAGGGATGGT GTTTATGACATCTTCGTTAACCGGAGGGATTTGTGCAACGGCATTGTTGTCCATGAATGTGTTGGGAGGGGTTGTTGTTT ACAGAGATGCTTTTGGGGGTCTTAAGGCTGTGTCAACTGTTCTGTGCATTTGGGGATTCTGTTCTTATGTTTTTGGATTG TATGTTAAGATGGTGAAGGAGAAAGCTAGAATGATGAGGAACAATAGTACTGGTTCATCCATGGAGTTGATCACTATTGA GAATCATGGTGGGAGTACTCATTGAACTAAGTGTGCATGTTTGGATACACAATCGGTATGGCCAAAATCATTAGTGAACT ATTATTAAAGTTAAGAAAAATTGCTTATATCCGCTTCTGACTTTAGCTGTAATTTTACTGTGTATTTAAAGATGGATTAT TTAGAATTGGATAAGATTATATATTGCAGTGAAGTTGTTGAGTTTGCATGATGGTGTAATTAATCAATTAGTGGCAATTA GACTCAGAAAAATTACTTGAGTTATTGTTTTCAATGTTAACATTTGCCTAATTGTATCTCTATTGAGTCA
CDS sequence (LotjaGi6g1v0247000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAAGCCCCACCAAATCCAATTCATCATCAATCTCTCAGCAGCATGGCCCCTCCCAAGACCAACGAAAACGACAT TGAAATTGAATCCACTGATCATGAAAGCAGAGCATTTCAATCACTTCCAAATCCCCCATTATCCATGGCCAACAACAAAA AGCACCTGAAAGAAGAAGATCAAAAGTCCTTCACTAACAAGAGGTACATACCCCTTTTGATCATCAATTACCTAATGCTC TTTGTTGGTTCCCTCTCTGGTAGTTTGCTATCCAAGTACTATTTCATCCACAAAGGTTCAAGCAAATGGGTCTCAACTTG GGTCCAATGTGCAGGCTTTCCCCTTCTAATCATCCCAATTTTTCTCCTTTATCCTCTCAATTTAACCAAGAGAAAACCCT TCACTGATTTCACCCCAAGGTTGTTAACTCTATCAATTTTTGTTGGTTTCATGTTAGGGGTTAACAATCTTTTAATCTCA TGGGGGGTTGCATATCTCCCTGTCTCAACCTCAAGCCTTCTGTTATCATCTCAGCTTGTTTTCAACCTCATCCTCTCTGC CATCATTGTGAAACACAAAATCACATTTTCTAATCTCAACACTGTGATCCTTCTCACTTTAAGCTCCATCATCCTTGCAT TGAATTCCAGCAATGAAAAACCAGAGGGGGTCACTAGAAAAAATTACTTTGTTGGATTCTTCTGCACCATTGGTGCAGGG TTGCTGTTTTCTCTGTATTTGCCAGTGGCGGAGAAGATTTACAAGAAGGTTTACTGCTATGAAATGGTGATTGAAATGCA GCTTGTGATGGAGATTGCAGCAACAGCATTGGCTACATTGGGAATGGCAATTGATGGTGGATTTTCTCAGATGAAGGAAG AGGGACAGAGATTGTTTGATAAAGGGCCCAGAGTTTACATTGTGACTGTGATGGCTAATGTGGTGGCATGGCAACTCTGT TTCATGGGAACTGCAGGGATGGTGTTTATGACATCTTCGTTAACCGGAGGGATTTGTGCAACGGCATTGTTGTCCATGAA TGTGTTGGGAGGGGTTGTTGTTTACAGAGATGCTTTTGGGGGTCTTAAGGCTGTGTCAACTGTTCTGTGCATTTGGGGAT TCTGTTCTTATGTTTTTGGATTGTATGTTAAGATGGTGAAGGAGAAAGCTAGAATGATGAGGAACAATAGTACTGGTTCA TCCATGGAGTTGATCACTATTGAGAATCATGGTGGGAGTACTCATTGA
Protein sequence (LotjaGi6g1v0247000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQAPPNPIHHQSLSSMAPPKTNENDIEIESTDHESRAFQSLPNPPLSMANNKKHLKEEDQKSFTNKRYIPLLIINYLML FVGSLSGSLLSKYYFIHKGSSKWVSTWVQCAGFPLLIIPIFLLYPLNLTKRKPFTDFTPRLLTLSIFVGFMLGVNNLLIS WGVAYLPVSTSSLLLSSQLVFNLILSAIIVKHKITFSNLNTVILLTLSSIILALNSSNEKPEGVTRKNYFVGFFCTIGAG LLFSLYLPVAEKIYKKVYCYEMVIEMQLVMEIAATALATLGMAIDGGFSQMKEEGQRLFDKGPRVYIVTVMANVVAWQLC FMGTAGMVFMTSSLTGGICATALLSMNVLGGVVVYRDAFGGLKAVSTVLCIWGFCSYVFGLYVKMVKEKARMMRNNSTGS SMELITIENHGGSTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| Phobius | 1 | 68 | 68 | - | – | |
| PANTHER | 40 | 405 | 366 | 1.3E-208 | – | |
| PANTHER | 40 | 405 | 366 | 1.3E-208 | ||
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 69 | 94 | 26 | - | – | |
| Pfam | 72 | 385 | 314 | 1.1E-99 | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 106 | 129 | 24 | - | – | |
| SUPERFAMILY | 116 | 217 | 102 | 9.02E-9 | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 141 | 166 | 26 | - | – | |
| Phobius | 167 | 171 | 5 | - | – | |
| TMHMM | 168 | 190 | 23 | - | – | |
| Phobius | 172 | 190 | 19 | - | – | |
| Phobius | 191 | 196 | 6 | - | – | |
| TMHMM | 197 | 214 | 18 | - | – | |
| Phobius | 197 | 217 | 21 | - | – | |
| Phobius | 218 | 228 | 11 | - | – | |
| TMHMM | 229 | 247 | 19 | - | – | |
| Phobius | 229 | 250 | 22 | - | – | |
| Phobius | 251 | 261 | 11 | - | – | |
| Phobius | 262 | 284 | 23 | - | – | |
| TMHMM | 268 | 290 | 23 | - | – | |
| Phobius | 285 | 303 | 19 | - | – | |
| Phobius | 304 | 322 | 19 | - | – | |
| TMHMM | 305 | 327 | 23 | - | – | |
| Phobius | 323 | 333 | 11 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 334 | 355 | 22 | - | – | |
| Phobius | 356 | 360 | 5 | - | – | |
| Phobius | 361 | 383 | 23 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 384 | 415 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Purine nucleoside transmembrane transporter activity | Enables the transfer of a purine nucleoside, a purine base covalently bonded to a ribose or deoxyribose sugar, from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0247000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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