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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0249200 |
| Transcript ID | LotjaGi6g1v0249200.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2C-like protein; TAIR: AT3G16560.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9LUS8|P2C40_ARATH Probable protein phosphatase 2C 40; TrEMBL-Plants: tr|I3T7Q6|I3T7Q6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0249200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56125171..56127170) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAGTCCGGAAGGAGAACTTAAAGTAAGTTTTGGCTATCAATGCAATAGCGATAGAGGTATCCCTTGCAAGGTTGC TACTGGCTATGAAATCCTTCCGGAAATCCAGAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCAAATT GTACACTAGCCAACACAAACATCTGCAATGGTGTGATAGGAGAAGAAATCCTTCCAAGTTTGGACTCTCCAAAATCCTTT CGCCGGGTACCCTCTTCCCCGAGTCTTGCAAAGTTGGACATACTATCATCTTCTCTCCACAGTAGTTTTTCAAACCTGAG TTGCAGCCCCTCTACTCCAAGTGAAATGCTTGAATGTGACCCTTGCACATTAAAATCCATGAGTTCTCCTTCCAGAAGTG AAGGTTTTCTTAATGGTACTGAAGTACAAGTAGCGGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAA GAAAATGGATGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCAGACTTTCTGGCTTGTACTCTTTA TGACACTATCATATCTTATTTTAACATGTTATGTTGGGATCTTGAACCAGATTCCATCAAAGCTACTGATAATATGGGTT TGGCTGGATCCTTTCATTGTAATCTGGATAATAGTCACACTCTTCATGAGCACCAATCTCTATCAAGATTTAAGGGAAGC ACCAATTCTAGTCCACCTGCCAAATCAGAAGCACCATTTTCAAATGCAGTTCTTAAAAGCCTGCAACATGCTCTTGCTCA GGTTGAGAATGATTTCTTGTGCATGGTTGAGCAGGAAATGGAGGAGCGTCCAGATTTAGTTTGTGTTGGATCTTGTGTTC TACTTGTTCTTCTTCATCGGAATTATTTGTATACACTTAATCTTGGCGACAGCAGAGCAGTGTTGGCTACGCGCGGTACA GATGGAAGAATGAATGGGAATGAGAGATTGAAAGCTATCCAGCTTACGAATAGTCATACAGTTGACGATGAAGCTGAGAG AGCTCAACTTCTTGCCAATCATCCTGATGATCCAAAGACTATTGTAGCGGGGAAAGTAAAAGGAAAACTAAAGGTCACTC GCGCTTTCGGGGTTGGCTACTTGAAAAAGGTTGGTACTCGTCTTTATATTAAAGACAATAAGTTTCCAAAAGATTTTGGA TAGTGCTATTTTGAAGAAGCTAAGGTAAATATATTACAAACTCATACTCACACCCAAGCTTCTAACGGTGAGTATTAACA TGTTTGAATCAGCTTTTTTTTTCCATAATCAATTCTGAAACTCAGAAGCTTCTCCGCAGAATTGATTATGGCTTTAAAAT TTCCAATTGTAGAAGAATTTCCAAACATGTACTATTTTGAAAAGTGTTGTGCATTTTCTGAGTTTTCTGGTTTATAAAAC TATGTATTGCAAAAAGTATATTTGTCCTACTTAACAAATAAACATGATTTTTTCCTCATGCAGAAAAATCTGAATGATGC ATTGATGGGAATCCTTCGAGTTAGTAATCTTAAAAGCCCGCCATATGTTTCAACCGATCCATCAGTGAATGTGCACAAAA TCTCAAATTCTGATCAGTTTGTTATAGTTGGGAGTGATGGTTTATTCGACTTCTTCAGCAATGATGAAGCAGTTAAGCTT GTAGAGTCTTATATCTTAAGCAATCCTTACGGTGATCCAGCAAAATTTCTTATTGAGCAGCTAGTAGTGAGAGCAGCTGA TTCTGCAGGTCAATTTTCAATATCTCATGCTAAATTTAGTTTTGTTTGCATGGATAAAAATTTCTGTTGTTTTACTATTT GATACCTAACTACCTAAGTGATTCTCTTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGGAGGA AGTATCATGATGATGTGACCGTAATGGTAGTCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAATTTGCATCTAA
CDS sequence (LotjaGi6g1v0249200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAGCAGGAAATGGAGGAGCGTCCAGATTTAGTTTGTGTTGGATCTTGTGTTCTACTTGTTCTTCTTCATCGGAA TTATTTGTATACACTTAATCTTGGCGACAGCAGAGCAGTGTTGGCTACGCGCGGTACAGATGGAAGAATGAATGGGAATG AGAGATTGAAAGCTATCCAGCTTACGAATAGTCATACAGTTGACGATGAAGCTGAGAGAGCTCAACTTCTTGCCAATCAT CCTGATGATCCAAAGACTATTGTAGCGGGGAAAGTAAAAGGAAAACTAAAGGTCACTCGCGCTTTCGGGGTTGGCTACTT GAAAAAGAAAAATCTGAATGATGCATTGATGGGAATCCTTCGAGTTAGTAATCTTAAAAGCCCGCCATATGTTTCAACCG ATCCATCAGTGAATGTGCACAAAATCTCAAATTCTGATCAGTTTGTTATAGTTGGGAGTGATGGTTTATTCGACTTCTTC AGCAATGATGAAGCAGTTAAGCTTGTAGAGTCTTATATCTTAAGCAATCCTTACGGTGATCCAGCAAAATTTCTTATTGA GCAGCTAGTAGTGAGAGCAGCTGATTCTGCAGGTTTCAGCATGGAAGAGTTGATGAATATTCCAGCTGGGAGGAGGAGGA AGTATCATGATGATGTGACCGTAATGGTAGTCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAATTTGCATCTAA
Protein sequence (LotjaGi6g1v0249200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEQEMEERPDLVCVGSCVLLVLLHRNYLYTLNLGDSRAVLATRGTDGRMNGNERLKAIQLTNSHTVDDEAERAQLLANH PDDPKTIVAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVSNLKSPPYVSTDPSVNVHKISNSDQFVIVGSDGLFDFF SNDEAVKLVESYILSNPYGDPAKFLIEQLVVRAADSAGFSMEELMNIPAGRRRKYHDDVTVMVVMLGMNQRTSKASICI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 226 | 226 | 31.672 | ||
| Gene3D | 1 | 235 | 235 | 3.9E-64 | ||
| SMART | 3 | 224 | 222 | 1.6E-16 | ||
| CDD | 4 | 224 | 221 | 7.70263E-43 | ||
| PANTHER | 5 | 236 | 232 | 5.4E-87 | – | |
| PANTHER | 5 | 236 | 232 | 5.4E-87 | ||
| SUPERFAMILY | 6 | 227 | 222 | 7.72E-38 | ||
| Pfam | 15 | 180 | 166 | 2.5E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi6g1v0249200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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