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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0249300 |
| Transcript ID | LotjaGi6g1v0249300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G17565.1 F-box protein (DUF295); Swiss-Prot: sp|Q3EA00|FB235_ARATH Putative F-box protein At4g17565; TrEMBL-Plants: tr|A0A1J7HLP8|A0A1J7HLP8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0249300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56131014..56132724) extracted from Lotus japonicus Gifu genome v1.2.
CAATAAAAAATCAACAATTTATTATTTTCTGCAACTAATTAACAATATAAATACCTACATTAAAAAACATATAATGTCAA CCAACTATTATATATATGAAACATTCGATATAATCTATTTGAATGGTGATTTTAAAAAAATGCATGATCTACTAATCATG ATAAAGCATTTCAAAAAACAAAACTAATCATGATAAAGGGATTTGAAATCAATCCTTAATTATCAGATATAGATATATAT AGATGTGAAATTTGTTATTAAAGATATGTTTACAGCTGTGTTTTCATACCTTAGAGGCTAGGTCTACAGCAGCCATAGTG AAGCATGGCGGCAACACAGAGAAGGGGTTGGTCAGATCTGCAACCAGAGTTGTTGGAACTAGTTCTACGGAGGTTAGTCG TGAGGGACTACCTTAAGTGTCGAGGAGTGTGTCGGTCGTGGCGAAGCATTGTTGTCAATGCAATCAAGAACAAATGTCCA TCTCTTCCTCAATTCCCATCCCTCTTGTTGATTCCAGGTAAATCTTCTTCTGACAACAAAGTCCCTGCCACCCTATTGGA CATCACAGGGAACAACAAGCAGCTTCAACTCACCCCATCTCGTGCATGGGAACGTTACTTTGATTGCGTTCAGTCAAAAG AGGGATGGTTGATGTTCAGACAATGTAGAGCAATAAAAGATAACAACATATATCATACTTTGTTTTGGATTTTCAATCCG GTGTCTGGTGAAGAGTATAAGCTCCCGCTATTACCATGTAGCCCGCGGTACAACGCCTTTACGAGGGATATAGTTGCGAT CTCTTCTGCACCGGATTCTCAAAACTTCTTGGTGGTGGTTCTGAAATGTATTCACCACCGTGGTGATTATATCCAGCCGC CACTATGTTTTTGTAAGGTCAATGACAAGTCATGGACTCGCATTGAAACAAATGAGTCTCGGTTTGTGGATATCATGTTT CTGGGATGGAAATTATATGCTGTGAAAGAAGATTCTGTAACTATTTTCAATCTCAAGGATCTCAATGCTATTACAACTGA AAGATTGGTTGTGCAGTTACCCGAAACGAACTGGGAAAGTCAGAAACATTGGAGGCTGGTAAGAGACTACTCTACATGTG GGGAAGAGTTGTTACTTTCTGTTACAAGTAAGTTAATTGGGTATATTAATGATATTCTCATTTTTAAGTTAGATATGAGT GGCCCCAGATGGATAGAGGTAGATAATTTGAATGGTCGTGCCTTATTTATGGATTCTCAAGTGACTCAAGTTATCTCTAC GGCAAACCTTAACGGTCCGCCAGAGTTTATCAGAGGCAATTATGTATTTTTCACACTTTCTTCCAACTATTATGGAGTCT TCTTTATAGAGGAAAAAACAACTCAAACATTTCATTTCTCTCCCTCAGCAATCTCAAACGGACATTTGTGGTGCAATCTA TCCTTGTCCTTGGTAGGACTGTGAGGATAAATAATTGATTAACAAGATAGACTATATTCACATCTTCAAGTTGGACATAA GTGGCTCCAGATGGATAGAGGTGAATAATTTGAGTTGTCCGTGCCTTGTTTGTGGATTGTGCAGGGTTCAAGTTACCTCC ACTACAAACCTTAATGGTCCACCAGAGTTTATTAGAGGGAATTGTGTTTTTCTCTATGAATTTGATAACCATCATCTTAG GTCTTCTTTTTAAAGGAAAATTAAATTCAGC
CDS sequence (LotjaGi6g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAACACAGAGAAGGGGTTGGTCAGATCTGCAACCAGAGTTGTTGGAACTAGTTCTACGGAGGTTAGTCGTGAG GGACTACCTTAAGTGTCGAGGAGTGTGTCGGTCGTGGCGAAGCATTGTTGTCAATGCAATCAAGAACAAATGTCCATCTC TTCCTCAATTCCCATCCCTCTTGTTGATTCCAGGTAAATCTTCTTCTGACAACAAAGTCCCTGCCACCCTATTGGACATC ACAGGGAACAACAAGCAGCTTCAACTCACCCCATCTCGTGCATGGGAACGTTACTTTGATTGCGTTCAGTCAAAAGAGGG ATGGTTGATGTTCAGACAATGTAGAGCAATAAAAGATAACAACATATATCATACTTTGTTTTGGATTTTCAATCCGGTGT CTGGTGAAGAGTATAAGCTCCCGCTATTACCATGTAGCCCGCGGTACAACGCCTTTACGAGGGATATAGTTGCGATCTCT TCTGCACCGGATTCTCAAAACTTCTTGGTGGTGGTTCTGAAATGTATTCACCACCGTGGTGATTATATCCAGCCGCCACT ATGTTTTTGTAAGGTCAATGACAAGTCATGGACTCGCATTGAAACAAATGAGTCTCGGTTTGTGGATATCATGTTTCTGG GATGGAAATTATATGCTGTGAAAGAAGATTCTGTAACTATTTTCAATCTCAAGGATCTCAATGCTATTACAACTGAAAGA TTGGTTGTGCAGTTACCCGAAACGAACTGGGAAAGTCAGAAACATTGGAGGCTGGTAAGAGACTACTCTACATGTGGGGA AGAGTTGTTACTTTCTGTTACAAGTAAGTTAATTGGGTATATTAATGATATTCTCATTTTTAAGTTAGATATGAGTGGCC CCAGATGGATAGAGGTAGATAATTTGAATGGTCGTGCCTTATTTATGGATTCTCAAGTGACTCAAGTTATCTCTACGGCA AACCTTAACGGTCCGCCAGAGTTTATCAGAGGCAATTATGTATTTTTCACACTTTCTTCCAACTATTATGGAGTCTTCTT TATAGAGGAAAAAACAACTCAAACATTTCATTTCTCTCCCTCAGCAATCTCAAACGGACATTTGTGGTGCAATCTATCCT TGTCCTTGGTAGGACTGTGA
Protein sequence (LotjaGi6g1v0249300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATQRRGWSDLQPELLELVLRRLVVRDYLKCRGVCRSWRSIVVNAIKNKCPSLPQFPSLLLIPGKSSSDNKVPATLLDI TGNNKQLQLTPSRAWERYFDCVQSKEGWLMFRQCRAIKDNNIYHTLFWIFNPVSGEEYKLPLLPCSPRYNAFTRDIVAIS SAPDSQNFLVVVLKCIHHRGDYIQPPLCFCKVNDKSWTRIETNESRFVDIMFLGWKLYAVKEDSVTIFNLKDLNAITTER LVVQLPETNWESQKHWRLVRDYSTCGEELLLSVTSKLIGYINDILIFKLDMSGPRWIEVDNLNGRALFMDSQVTQVISTA NLNGPPEFIRGNYVFFTLSSNYYGVFFIEEKTTQTFHFSPSAISNGHLWCNLSLSLVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 5 | 63 | 59 | 6.28E-7 | ||
| PANTHER | 7 | 349 | 343 | 8.5E-38 | – | |
| Gene3D | 8 | 46 | 39 | 2.3E-8 | – | |
| Pfam | 9 | 43 | 35 | 1.1E-8 | ||
| SMART | 12 | 51 | 40 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0249300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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