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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0249600 |
| Transcript ID | LotjaGi6g1v0249600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translocator-like protein; TAIR: AT2G47770.1 TSPO(outer membrane tryptophan-rich sensory protein)-like protein; Swiss-Prot: sp|O82245|TSPO_ARATH Translocator protein homolog; TrEMBL-Plants: tr|I1L102|I1L102_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0249600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56138054..56138560) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCCAAGGCCTGCATGAAGCAAAGAAGAAAACTAAAGCCAAACGAGCACTACGTTCCCTAGCAATAGGAATCTT GGTCCCACTCACCCTCACATTAACCATAATCATCCTCTTCGGCTCAGGCCGCAAGTACAACCGGCTAACCAAGCCGGTCT GGTTCGCGCCATTATGGTTCATCCACTTAGCCACATTGGGCTCATCGTTCTTCATGGGGCTCGCGGCTTGGCTCGTGTGG GCTGATGGCGGGTTCCAAGGGGAGGAATCAGATGCATTGTCTCTGTATGTGGCGCATGTGTGTTTGAGCATTGTGTGGCA CCCGCTTGTGCTTGTTATGGGTGCGTTTTGGGTTGCGGCGGTTTCTTGCGTTGTGAATTTTGGGACTCTGTATCTGTGTT ACTTGAGGTTTAGAAGGGTGAACCCTTTTGCTAAAGATCTGGCTAAACCGTGTCTGTTGTGGGCTGCGTATCTTACTGCT GTTAGCTTCAAGCTCTTGTTTCTTTGA
CDS sequence (LotjaGi6g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCAAGGCCTGCATGAAGCAAAGAAGAAAACTAAAGCCAAACGAGCACTACGTTCCCTAGCAATAGGAATCTT GGTCCCACTCACCCTCACATTAACCATAATCATCCTCTTCGGCTCAGGCCGCAAGTACAACCGGCTAACCAAGCCGGTCT GGTTCGCGCCATTATGGTTCATCCACTTAGCCACATTGGGCTCATCGTTCTTCATGGGGCTCGCGGCTTGGCTCGTGTGG GCTGATGGCGGGTTCCAAGGGGAGGAATCAGATGCATTGTCTCTGTATGTGGCGCATGTGTGTTTGAGCATTGTGTGGCA CCCGCTTGTGCTTGTTATGGGTGCGTTTTGGGTTGCGGCGGTTTCTTGCGTTGTGAATTTTGGGACTCTGTATCTGTGTT ACTTGAGGTTTAGAAGGGTGAACCCTTTTGCTAAAGATCTGGCTAAACCGTGTCTGTTGTGGGCTGCGTATCTTACTGCT GTTAGCTTCAAGCTCTTGTTTCTTTGA
Protein sequence (LotjaGi6g1v0249600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQGLHEAKKKTKAKRALRSLAIGILVPLTLTLTIIILFGSGRKYNRLTKPVWFAPLWFIHLATLGSSFFMGLAAWLVW ADGGFQGEESDALSLYVAHVCLSIVWHPLVLVMGAFWVAAVSCVVNFGTLYLCYLRFRRVNPFAKDLAKPCLLWAAYLTA VSFKLLFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 7 | 168 | 162 | 2.1E-79 | ||
| PANTHER | 7 | 168 | 162 | 2.1E-79 | – | |
| PIRSF | 11 | 168 | 158 | 2.6E-30 | ||
| Gene3D | 16 | 168 | 153 | 6.4E-24 | ||
| Phobius | 21 | 42 | 22 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Pfam | 26 | 165 | 140 | 5.2E-21 | ||
| CDD | 40 | 166 | 127 | 7.74385E-18 | ||
| Phobius | 43 | 53 | 11 | - | – | |
| Phobius | 54 | 80 | 27 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 81 | 91 | 11 | - | – | |
| Phobius | 92 | 109 | 18 | - | – | |
| TMHMM | 92 | 109 | 18 | - | – | |
| Phobius | 110 | 114 | 5 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 115 | 135 | 21 | - | – | |
| Phobius | 136 | 146 | 11 | - | – | |
| Phobius | 147 | 167 | 21 | - | – | |
| Phobius | 168 | 168 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0249600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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