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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0251100 |
| Transcript ID | LotjaGi6g1v0251100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen Ole e 1 allergen/extensin; TAIR: AT3G16660.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|Q56S59|PHYLL_TOBAC Phylloplanin; TrEMBL-Plants: tr|I3SRC2|I3SRC2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0251100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56312158..56313614) extracted from Lotus japonicus Gifu genome v1.2.
GTTAAAAATAGGAAGAAAAAGAAAATTGTTCATTTGGTACTGAGCACTTAGTTATGAAGCTTATCACAAGCACACGCAAA TTCCAATTTGGTAGGGGGTAATCATGCAGCATGGCACTTCTCTATAGTATATAATTGTTCATCTCCACAACTCAATTGTT GCAACCAAGTTATAATTAACTTGTTTTGATTAACCTATCCAAGAGAGAGCCATGACCCTGAAACATCTTATAATGATGAT ATCTTTGCTCATTGCTGTAATGGCAATTCCCCAAGCCCATGCCCAGCTTGGTATTCTGAATGATCTCCTGGGTTCTGTTA ATATTCAAGGAACTGTTTCTTGCACTTCCAATGACAATAATGTCGCAGCAGCAATCCCAGGTTTTTCAAGTAAGCCCAAA ATTCATTGCCATTCATTTTGCAAAGTTCTGACTTCTTCCTAAACTAATGTTTTTTTAGTGGGAGAGGGGGGGGGGGGTTA TGACTTATGAGGTTAAATAATATTTAATTATATTAAAGTCTCATTTCTACTAGATATATAAGTAATCTTTATAAAATTAT AAAATGTAGAACAATTATATATCTTATAAAAAAAATTGGGTAGAGTAACATTTAGCCAAATTTTAAAATGGTATCAAAAT TTATCATATATTTGTTAAATTTATCCAATTATATAAATCGTTTGCATATGTTAAATTTCACACTTTAAGTGTTCAAACCT GAGTCTGAGTAAAGTAGGCTAATGTGTCTCGGGATGACTAAAGAGATATGGCCCAAATAATTCAGGGTAAATTTGAAAAA CAGAGCACTAGGTTAAAATATATTCCATGATTATCCTTCTTATACTTCAATAGATGTTGCCTCATCTGTTATAGCTCAGT CTCACTAGTGATGATGCATGCTACATTTATAATAATATTTCAGATGCTCAAGTGCAACTGCAGTGTGGAGAAAAAGTGTT TTCTGATGCAACAACTGATGGTGATGGAATGTTTTCTATGATGGTGAATCCCCTGCTCTATGATCTGTCTTCCCTGCTAA GTGGTTGCAACCTTGTGATTCCTACACCACTCTCCAAATGCAACTCCAACCTTCCTTCAATTGGGGGACTGATATCAACC CTGCGTTATGTTGGGCTCAGTCATGTTGGGACTGAGACCATAGCCAACATGGAACCATCGGGATTTCATTTCAAGCCCTC AGTTTAAGGCGTTACAGTTAAGGAGGACAATGCCATCACAAACTTATAATTAAATAACATCTTTGCCCTCCTCCCCCTTT TATCACTTTTTTGTACTAAGTACTTGAAATTGCCTCCTATGCTATGTCTGAATTGGCATTTGGATAACTAAAGACCATGT GTGTTTCTGTTTTTCCTTCATTATTATGTGCTTTTGGCCCTAAACTTTAACTGAAGAGTGAATCATCTTAATCATCATAT TCATAACCAAGTAAGGC
CDS sequence (LotjaGi6g1v0251100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCCTGAAACATCTTATAATGATGATATCTTTGCTCATTGCTGTAATGGCAATTCCCCAAGCCCATGCCCAGCTTGG TATTCTGAATGATCTCCTGGGTTCTGTTAATATTCAAGGAACTGTTTCTTGCACTTCCAATGACAATAATGTCGCAGCAG CAATCCCAGGTTTTTCAAATGCTCAAGTGCAACTGCAGTGTGGAGAAAAAGTGTTTTCTGATGCAACAACTGATGGTGAT GGAATGTTTTCTATGATGGTGAATCCCCTGCTCTATGATCTGTCTTCCCTGCTAAGTGGTTGCAACCTTGTGATTCCTAC ACCACTCTCCAAATGCAACTCCAACCTTCCTTCAATTGGGGGACTGATATCAACCCTGCGTTATGTTGGGCTCAGTCATG TTGGGACTGAGACCATAGCCAACATGGAACCATCGGGATTTCATTTCAAGCCCTCAGTTTAA
Protein sequence (LotjaGi6g1v0251100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLKHLIMMISLLIAVMAIPQAHAQLGILNDLLGSVNIQGTVSCTSNDNNVAAAIPGFSNAQVQLQCGEKVFSDATTDGD GMFSMMVNPLLYDLSSLLSGCNLVIPTPLSKCNSNLPSIGGLISTLRYVGLSHVGTETIANMEPSGFHFKPSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 150 | 150 | 2.2E-47 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 150 | 150 | 2.2E-47 | ||
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 153 | 129 | - | – | |
| Pfam | 38 | 113 | 76 | 1.8E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0251100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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