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LotjaGi6g1v0253000.1

Overview

Field Value
Gene ID LotjaGi6g1v0253000
Transcript ID LotjaGi6g1v0253000.1
Lotus japonicus genome version Gifu v1.2
Description Protein phosphatase 2c, putative; TAIR: AT3G05640.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9M9W9|P2C34_ARATH Probable protein phosphatase 2C 34; TrEMBL-Plants: tr|I3SJT8|I3SJT8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0253000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:56532270..56535251) extracted from Lotus japonicus Gifu genome v1.2.

CTGCAATCTTGCTAATTAATTATTACTAATACGTTTCTCATGGTAACACTGACGTTTAATCACTTCTAATTTCCCAAAAA GCCCATCTATTCTGTATCTTATAGTGGCTAAAACAAGGGTCCTATGATAATAACAGCCACCACCTTACATTACAAGTTGT ATAAGAAGTAAACGTCACGTTCATAAACTAGTTGTGCTTACAATTTAAGACCATGGAGTGTACATATTCCATAGCTTCAG ATGAATCATCTCTCAATTCATCAGGTTCTGGCTTGAGATAGGAATCACAGGTAGTTATTCCAGTGGGAAATTAAGTCTTT TTGATAATACATATCATGGTTTTTGGCTTTTTGCAATCTTTACATTTCTAGTAGAATAGAAATATAATATGCAACTCTGA TTTGGAATGTAGCAGCAACCATGGTTCTTTTTCCATCTTTTGTCAACGGGTTGGCGAGAACCGTGTCGTTGAAGAAAGAG AAGAGTCGCGGAAAGAATGAAGGAAGAAAAGTTGTGAAATCATTGATAAAGGAAGCAAGGAAAAATGAGTTGTTACTGAG TACATCTGGAATTGTTAAGTCTTCCAAGGGCAACAATTTTGCCTGTGTGTTCACTAAACAAGGCCAAAAAGGAGTCAATC AGGATTGCCTTATTGTTTGGGAGGTATGCAAACATAAATCGCATTTGGGTACGGACTAAAAAACACTTATTGTAGCTTAT CTACTAGAAAAAAGTACAAGCTTAAATACTTCCTCTTTGATCCGTATCCAAACAGGCTCATAGTAGTTGACATATAGATT TTTTCAGAGTGGGAGACTCTTAAGAAGATATTGATTTTATGTTATAATTTTGTTTCTGATGCTAGGAATTTGGTTGCCAT GAAGACATAACCTTCTGTGGGATTTTTGATGGACATGGCCCTTGGGGACACTTTGTAGCCAAAAGGGTAAGGAAACTAGT ACCTGCCTCTTTGCTATGCAATTGGCAGGAAAATCTGGCTGCATCAACACAACTTGACCTGGATTTTAAAATGGAAGAAG ACATGAACCTTCATAGATTTGACACGTGGAAGCAGTCCTACATAAAGACTTTTGCTGCAATTGATCAGGATCTTAAGCAG CAGACTGGGATTGATTCCTTTCAAAGTGGTACAACAGCTTTGACAATCATCAAACAGGTTATCCATAACATGTCATATGG TATATACTAGTATTGACATTTGATTTAACTTCTCTTCATATTCAAATGTTTGGTATTATGTTAACTTTGAGTCTGTTTGG ATACGGACCAACTGGCATTTATTGAGGTTTCTCTATTAAAAAATGCACTAGATATGCTCCAATTCATGTTCTTTGGTCTA CATCCAAACAAACACTTTGTCTCAGCTCTACATTTTCAATCAATGTATATAGTTTCATTCTTTTGTTTTACTTTGTCATT AATGTTTCAGGGTGAACATCTCATTCTAGCAAATGTTGGTGATTCTAGGGCGGTGTTGGCAACCACTTCAGAGGATGGAA CATTAACTGCACTTCAGCTAACCACTGACTTGAAGCCAAATTTACCAAGTATACTACTCTCTATTTTACACACACATAAG AAGTGCATGCTTTTATTCAAGAAAATTTGAGTAATATTTTTTGTTGATTTCAGAGGAGGCAGAGCGCATAACACAATCCA AAGGGCAGGTATTTTGTTTAGAAGATGAACCAGGAGTGTACAGGGTGTGGATGCCAAATGGTAGAAAAGCTGGACTTGCA ATATCTAGAGCATTTGGTGACTACTGTTTAAAAGACTTTGGAATAATCTCTGTGCCAGAAGTCACACAAAGAAACCTGAA CCCCATGGATCAATTTGTCATCTTGGCAACAGATGGGGTATACACCTTACTTCTTTTCCTGATTTTTCTCAGCTTATTTT TCCCGAGAATCAATTTTGGCACCCAGAAGCTGTTGTAAGAAGCTTCCACCCAAAATTGATTCTGAGATAAGAATCAGTGC ATTTTTGGGTACACGGTGAAACCAAAATTACGGTGAACAACCACAAAAGTTAAGGGAAGTTGCTTATGTTCATCGTAATG TCTGTTCACCATGATTTTCCACGGTATATCCAAACATGCAACATAGTCGGTTATGAACAAAGTCAACAATAAAAAACAAT AGCAAATGAAATTCAGTTGTTTCATGAACAATGTTGGACCAACTCAATCAATAGAGATCATGGTTGATTGGTTAAAGTGA AAATGAAATTAAAGTGAGCATGTTACTAGTCCATGTGATGAAATAGATGTACCATGTGAAGTGTTAATGTGTTTGCTTCT TTTCTTTTTTCCATCTCAGGTATGGGATGTTATTTCAAACCAAGAAGCAGTTAGAATCGTTTCTTCAACTCCAAATAGAG AAAAAGCAGCTAAAAGGCTCGTGAAATGTGCCACATATGAATGGAAACGTAAGAGAAGAGGCATTGCTATTGATGATATA TCAGCTGTTTGCCTCTTCTTTCGCTCTCCCTCTCCCAAGTACTCTAACCAACTTCCAACCGCTAAAGTTGTCAAATTAGG GTGTTGAAACTGCTCATTGGTGCTTCCTTAAAACACAAAATGCATTGGTGCTGAGAATATGCATCATTAGCTATTAACTA CATTTTATCAGTTATAGATGTTAGTTTATGGGCTGTTACAGGTGAAATAAAATAAAATAAGAAGTAATGAGATTGTGATC ACTTTTGTTCCGTTCATTTTTTTACATTTTTCATTTATGAGTTTTGCTGTATTTAAAGGATTTTTTTTTTGAACTAGTAT TTAAAGGATGTTAGTATTAATAAAGTTGTGTGATTTGTGTTTTCCGATGTATCAAAAAAGTTGTGTGATTTGTTAAGGTG GTCTCTATGCGGACAACAAACACTCATATCTGGGCCAACCAAAAAAATCTGAAATTATGGTGCACTCCAATCTTAAAAGA TAATTGTTATGATATCTACAAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0253000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTCTTTTTCCATCTTTTGTCAACGGGTTGGCGAGAACCGTGTCGTTGAAGAAAGAGAAGAGTCGCGGAAAGAATGA AGGAAGAAAAGTTGTGAAATCATTGATAAAGGAAGCAAGGAAAAATGAGTTGTTACTGAGTACATCTGGAATTGTTAAGT CTTCCAAGGGCAACAATTTTGCCTGTGTGTTCACTAAACAAGGCCAAAAAGGAGTCAATCAGGATTGCCTTATTGTTTGG GAGGAATTTGGTTGCCATGAAGACATAACCTTCTGTGGGATTTTTGATGGACATGGCCCTTGGGGACACTTTGTAGCCAA AAGGGTAAGGAAACTAGTACCTGCCTCTTTGCTATGCAATTGGCAGGAAAATCTGGCTGCATCAACACAACTTGACCTGG ATTTTAAAATGGAAGAAGACATGAACCTTCATAGATTTGACACGTGGAAGCAGTCCTACATAAAGACTTTTGCTGCAATT GATCAGGATCTTAAGCAGCAGACTGGGATTGATTCCTTTCAAAGTGGTACAACAGCTTTGACAATCATCAAACAGGGTGA ACATCTCATTCTAGCAAATGTTGGTGATTCTAGGGCGGTGTTGGCAACCACTTCAGAGGATGGAACATTAACTGCACTTC AGCTAACCACTGACTTGAAGCCAAATTTACCAAAGGAGGCAGAGCGCATAACACAATCCAAAGGGCAGGTATTTTGTTTA GAAGATGAACCAGGAGTGTACAGGGTGTGGATGCCAAATGGTAGAAAAGCTGGACTTGCAATATCTAGAGCATTTGGTGA CTACTGTTTAAAAGACTTTGGAATAATCTCTGTGCCAGAAGTCACACAAAGAAACCTGAACCCCATGGATCAATTTGTCA TCTTGGCAACAGATGGGGTATGGGATGTTATTTCAAACCAAGAAGCAGTTAGAATCGTTTCTTCAACTCCAAATAGAGAA AAAGCAGCTAAAAGGCTCGTGAAATGTGCCACATATGAATGGAAACGTAAGAGAAGAGGCATTGCTATTGATGATATATC AGCTGTTTGCCTCTTCTTTCGCTCTCCCTCTCCCAAGTACTCTAACCAACTTCCAACCGCTAAAGTTGTCAAATTAGGGT GTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0253000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLFPSFVNGLARTVSLKKEKSRGKNEGRKVVKSLIKEARKNELLLSTSGIVKSSKGNNFACVFTKQGQKGVNQDCLIVW EEFGCHEDITFCGIFDGHGPWGHFVAKRVRKLVPASLLCNWQENLAASTQLDLDFKMEEDMNLHRFDTWKQSYIKTFAAI DQDLKQQTGIDSFQSGTTALTIIKQGEHLILANVGDSRAVLATTSEDGTLTALQLTTDLKPNLPKEAERITQSKGQVFCL EDEPGVYRVWMPNGRKAGLAISRAFGDYCLKDFGIISVPEVTQRNLNPMDQFVILATDGVWDVISNQEAVRIVSSTPNRE KAAKRLVKCATYEWKRKRRGIAIDDISAVCLFFRSPSPKYSNQLPTAKVVKLGC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF692
21 357 337 1.4E-170 –
PANTHER
PTHR13832
21 357 337 1.4E-170
IPR015655
Gene3D
G3DSA:3.60.40.10
47 355 309 1.6E-77
IPR036457
SMART
SM00332
51 351 301 2.5E-62
IPR001932
SUPERFAMILY
SSF81606
57 355 299 2.88E-60
IPR036457
CDD
cd00143
59 353 295 3.31809E-74
IPR001932
ProSiteProfiles
PS51746
60 353 294 46.819
IPR001932
Pfam
PF00481
80 330 251 1.2E-43
IPR001932

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0253000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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