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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0253200 |
| Transcript ID | LotjaGi6g1v0253200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 10 kDa chaperonin; TAIR: AT4G16060.1 hypothetical protein; Swiss-Prot: sp|Q4P257|EFGM_USTMA Elongation factor G, mitochondrial; TrEMBL-Plants: tr|V7B245|V7B245_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0253200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56545621..56551204) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAAATGAAGAAATAAAAATGGTTTATTGAAAAATATAGTAATATCAAATACATTAGCTACCAATAAAGTGAAAACAA GTGGCAGTTCAAACTTGCAGCTTGCTATGAGCATCACCACCACTTCCTTAACTTTTCAACTCACACTCCCTCCCCGTCTC ACATTCGGCGCGTCACACCAACGCGCCGCCCTCTCAACTCCACTCCCTTCACTCTCCAAAACACAGCGACCCTTTCTCTC CTCCGCCATGTCCTCTCCTCCGACCGTCACCGAACTCATCGACGAATCACACTTCTCCTCTCTCCTCTCTCCCGACGGTT ACATCTCCATCTGCGGCTTCGGCTCTCTCCTCTCCGAGAGAAGCGCAAGAAGCACTTTCCCCGATTTGCTCAATTTCAGA ACCGCCAGGTTGAACCATTTCCGCCGCGTCTTCGCTCACGTCGCTCCCGTTTTCTTCGAACGCGGCATTGCCAAACCTGA AACCATGGTGGTTCCTTCTTCTCTTCTTATCCTCACTCCTTAAGCTTTTTGAATTCTCACTGTTTTTACTGTGTGTTGAT GAAAACGTTGTTAGGAGATTTCAAGTTTGAGTGTGGAACCGTGTGATGGAGAAACACTTGTAGTAACAGTGTTTGAGATT GGAAAATCAGAGGTATACTATTGACTGAGTAGTTCAATTCAATGCTTGCTTGCTTTGATTGATTTGTGTAACTGGGGTTT TGACTTTTTGTTGACTGAGCATTGGAGCTAACTTTTATAGGGTTGAATTTGTTTTCAGATTCCAGATTATATCAAGAGGG AGGTCGAGTTTCGGTTTCTTGCTGTAAGTAGGAAGATGTAGATTTTGATTTTGATTATTGCTGCTTTTAGATGTGTTGAT TGTTTTCTGCTGTTTTTAGATGTGGTGTGATATGTTCAATTCTTTGTATCTTAGGTTGTTCCTGAAACGCTTGATGGCAA GCCTTTTGAGTTCCCGGCGGTATGTGATGATTATTAGTTATTGTTGTAGAAAAGTATGATTCACTGTGTTTATGACATCC TAAGGAAGAATGGTTTTGTTTAATTAGCTGAGGATTCTTTTGATGTGTCAAAATGTTTGCAGGTCCTTTGTGCTCGTTAT AGTGATGAGGAGTTTTTCAAGATTCGATGTAAAGGTAATTCATCATTAGCATTATACTTATTCAGGACATGGGGTTTGTA TTGTTTTGGAAACATGAAATGCTGGTATTCATCCAACTTCTCGTGTTAGTTCACTTAGTTGATGTATATACTTGCACCTC AATCTATCTGACTACAGAAACTGATCAGCAAATAGCTAACTACTGTATTTTGAGCTAAATATGTAAGCATGGAAATCTCC TGATTAACCTAAAATATAACATGTATTTTTTTATGAAGGGTTAACATGTTCTCCAATAATTATTTACATTCCTCGCTTAT AAAAAAAATTTATTTAAATTCCTCAATATTTCCCAACTTTCTGTCTAGACAGAAATATGAAATGGTTGATGATAGCACCC TCCCATCATTGCACTGGAGGTGATTACTGTTTTATGTAATATGTAAAATATCATTGTGGAAGTCTGTTTATGCACACCCT TTGTCATGCTTAGATCATCTTGTCTTATTTTTTCATTTATCCACGCTTACATATGATTCCATTCAGGAGACAAGGAAATT TATTTTCAACAATATGGACGGTGGAATATTGATAAAATTTGGAGAGATGATGTCTTACCTTGCCGTGTTTATCTTCGACA CTGGTAAGCACTTTTTAGATGAAAGTTTTGATGTTTATCTTCGACACTGGTAAATGCACTAAGCACTTTTTGGATGCAAA TTTTGATTTGGAGGGAGGTAGTTCAAACTTATCATACTTCATCTAGATTTCTGGTTAACTATTTTTTCCTGGTCGCATGG TCCTTGCTGTCAGTTAAAGAATACAAAATATGCAACTGACAGAAAATAGTTCCTTCTTAGATGACAATTCTGATTTTGTT ACACATTCATGGGCTACATTGCTCCTTTCTAGTTTCTGCATTCTTTTTTGTTTTCTTGAGGGACTTCTTGCAATTTCCCT CTTAACTGAGTCTTGTGTTGGATTCATTGTAAATTAACAGGAATTATGAATTTTTTTGTAGTGTACTGGCTGCAAAGAAT CTTGATGACACAGCCTACAACAACTTTCTGGATCACACTTACCTTGCTGACCGTAAAACAACCATCCGCGAGTACTTGGC AACAACAGGATCTGGCATCATGGAAGAGGAGCCCCCTAAGTCCGTCAAGTACCGCTATGGTGGTTGATAGTTCTAACAGT CAGTTTTTACTGCTTCAGATATGTCAACATCAAAGGATCCAAGATGGACTGAACACTGATAGTTCAATAAAAAAACATAA GCTTGCTTTAATAATACATTCATGCTGTTCAGTCTTCTGATTTGCTGAAAGTTATGAATATCAAGCTTAAGAATAGCATG CAACAGAACACAAACCAGAGCATATGTAGAGCTTTCTTTGTTAAAAAGTTACATTCATCTCTGATGTTAACTGTATCATT AGTATAGTACCTGAATAATGTTTTGAATGTAAATTTTAAGCATCACGCATAACATGTTTAACACTGTTCTAGGGTGGATA AATGGCAGAATTTGTAAAACTAATTCCCTTGGATTAACGAATGATTGGTTTGCTGCTATCATATTGTCTTCACCATCTCA CCATTTGTCATGTTCATTTAAGTACTTCTTGCTATACTTAATTCAAAAATTGACCCTGAACATAATTTGTCAACAAGACA TTGTTTGGCCTGGCCATATTTGCAAGTCGACACACTTTGAACTCAGTTTGCTAATTAGCCACATTAGGATCCATTCCTTT TTGTATTTTTGGTCGAAAGGATCCAAATCCAAGAAACATAAGTGAACAATCTAAAATTTGGTCAAACTATTGGGAATTTC ATTTTAAATAAATAATACACTTTAGGCGATAACTGCAATAAACACTGATGAATATACGAAGTGGATAATACTTCTATAAA TGTTCATCAGAATAGAAGGTTTCGGAAGACTCAAAATTGGAAGCTCTTGCCCTTGCAAGTCATTGCTAGTACTTCATCCT AAAACAACAGTCTCTCTAGTGTCGCTCACAACATGGTAGAACATCAGCTTTCGAACACATCTAAGAGAAGGTAACAAAAC GCGCTATCTATAAACTCAGGACACTCTAGAATCATCAGCTTTCATGATACATTTAGCATGCACACAACTGGTGGGAACAC AACATAAGCCGAGGTGAAGAGGCCTCCCTTTCACAAAGGGTTATACCTACTCAGTCTTCAAACTTTAATTTCTTTGGAGC TGGCTGGATGTTACCCACCTGCAACAACAATTACACAACATGAGAATGAAATTGAAGATTTGGACTTTAAAACACTAAAG CAACCATATATTGGTATAGGCAAAAAACTCACAATCTCAGGGCATTCATAATCAATGCCAGCTTCCTCTATCTTCTTACG ACGTTTTTTATCACGACTCACAATCTTTTCAACTAACTTTCTGTGCTCTTCCAATGTTCTTTCCTGAAAATGAACAAAAC AAGCTTTCGTTTATACTGAGAATCAGACTGATATACTATCTTCTTCATTGATCAAGATACCTTGTCATGTTGCTCTCGCT GAATTTCGACAGAGTCCAATGGCTTGTAACGGTAATTGAACCCTCTCCATCTGGAAGGAAAAACTCCCATATCATGTAAC GCTCTTGAAGATATCCAGAACACAAAACAAACTCTTTCACAGAACTCAAAGACAAATTTAAATTTAGTCTGCAATTTTAC AGGCTTTGATACAAAGGAGGGAAAGATGATTGGGAGTCCTGCTCTTTTTTGGGGCAAGTGGGGTATTTGGTTAAAAGCCA ATGCAAGTCTTTTTATCCAGTTATTATTTGACGTACAATTTGGGTTATGATAGTTTTCCTACATACTAGGGTTTCTGCTC ATTGAATTTTTTCAAGAGGGTCTCTATTTGATTGTTTTTGGTGAGGGGAGGTTAGAATAATCATGTTGAGAAGCCTGCAA TCATCATGACCAAACTAATAGGCCTGCAATCCTACAACTAGATAATATCATCTTTCTATGGAACCAAACTCAAAAATTAA AGAATTTATGAACATCCAGATGGGCCCGTGTGCTAGTTTTTTGTCTTTTCTTTGATTCTAGTCATTTCCACCCCTCCCCG GTCATTTTAGCGAATTCTACTACTTTTCTCTTTACAAAGACCTTTACAGAATAAAAAAGTCTAACATTAAGGAAACATAT GAATATATGATGAAACCCTAAAATAAATACCGAAAAAGGAATTAATAACTTACAAGTTTGGATGAACCTGCTCTGGAGGC ATCACATGAACCTGGAGAAGGTGCGCAAATAGTAGATAATTGTGCATAGTATCAGCTACAATTTTTGCTACCTACAAAGT GAAAAAAACACCAGCACAAAGAAAGAGAAGTTTAAACCAAAGATCATAGCCACAAGTCAGAATACAGAAACCGGCCAGAG GAAACAACAACTACCTCAGCAGATTCAAATTCTATGAACCCAAAATGTCTTGATTTTCCAGTCTGTTAAACATCAACCAA TAGATATCATCAATATCAATCATCAGTGAAAAGGATAATTAAACAGAAAACACACAAGGTTAAATGCATGTATTTAACTG AAACAAGTAACATGGCTCAGAAGCCAGACATCCATCCAAAAGAACCAATCAAAACAAAAACCCTTAAACCTAAACATCGC TCCACACCGAGCAGAGGAACTAATAACTATTAACATCATGTCTGAACATTTTTTCATTTTGAAACTTCAAATTCTTCAAA TTAGGAGAATACACACACAATAATGAAATATTCAACACAAATAACCATTACCTAGATAAAAGTAAAGCATGCCAAACATA AAGATTAAGCTGACACAAGAGTAAGCAAACATAACAGATACAAACAAAACAAGTTCATGAACCAAACCTTTTTGTTTCTG GCAATTCTCAACCTCTTGATGGTTCCAAATTGTCCAAAATAACCTACAATTAGCAAACAATTATAAACACATATTCCATG CAAACAAATTCAAATTTGAGGAACAACAAAACACATGTAAAGTGAACAAACCTTCAATCTCCTTCTCATAGAACCCATGT GGGATCCGACCGACATACAAGACGGTGCCTTTATTCTCCAACGGTGTCTGCACGGGAAGTTTCCGAGCAGGACCACCTTC CAAGGGCTTCAGAAAACGCGAAACAAAGATTAGGAACAAATAAAACCACCATTGACGAGAGAGAACGAGCTATGAACATT GACATACCAAAAAATCAGGACCATCAGAGGGTTTAGCAGCAGTGACCCTTTTCAAACTCTTCTGCATCGCTTTCTTTGCC TTCTTCCCTCCCATCTTACTGTGTCGAAACCCTAATTTTTTGCAGAAATTTGTGAATAGAAGGAGTGAGGCAAAGAGCAA GAGACTGCAACTTGTGTCGTCGTTGTGTTGAAGTAGGAATTAGAGTTTGAAGTTTATGGGTTAT
CDS sequence (LotjaGi6g1v0253200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATCACCACCACTTCCTTAACTTTTCAACTCACACTCCCTCCCCGTCTCACATTCGGCGCGTCACACCAACGCGC CGCCCTCTCAACTCCACTCCCTTCACTCTCCAAAACACAGCGACCCTTTCTCTCCTCCGCCATGTCCTCTCCTCCGACCG TCACCGAACTCATCGACGAATCACACTTCTCCTCTCTCCTCTCTCCCGACGGTTACATCTCCATCTGCGGCTTCGGCTCT CTCCTCTCCGAGAGAAGCGCAAGAAGCACTTTCCCCGATTTGCTCAATTTCAGAACCGCCAGGTTGAACCATTTCCGCCG CGTCTTCGCTCACGTCGCTCCCGTTTTCTTCGAACGCGGCATTGCCAAACCTGAAACCATGGAGATTTCAAGTTTGAGTG TGGAACCGTGTGATGGAGAAACACTTGTAGTAACAGTGTTTGAGATTGGAAAATCAGAGATTCCAGATTATATCAAGAGG GAGGTCGAGTTTCGGTTTCTTGCTGTTGTTCCTGAAACGCTTGATGGCAAGCCTTTTGAGTTCCCGGCGGTCCTTTGTGC TCGTTATAGTGATGAGGAGTTTTTCAAGATTCGATGTAAAGGAGACAAGGAAATTTATTTTCAACAATATGGACGGTGGA ATATTGATAAAATTTGGAGAGATGATGTCTTACCTTGCCGTGTTTATCTTCGACACTGTGTACTGGCTGCAAAGAATCTT GATGACACAGCCTACAACAACTTTCTGGATCACACTTACCTTGCTGACCGTAAAACAACCATCCGCGAGTACTTGGCAAC AACAGGATCTGGCATCATGGAAGAGGAGCCCCCTAAGTCCGTCAAGTACCGCTATGGTGGTTGA
Protein sequence (LotjaGi6g1v0253200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSITTTSLTFQLTLPPRLTFGASHQRAALSTPLPSLSKTQRPFLSSAMSSPPTVTELIDESHFSSLLSPDGYISICGFGS LLSERSARSTFPDLLNFRTARLNHFRRVFAHVAPVFFERGIAKPETMEISSLSVEPCDGETLVVTVFEIGKSEIPDYIKR EVEFRFLAVVPETLDGKPFEFPAVLCARYSDEEFFKIRCKGDKEIYFQQYGRWNIDKIWRDDVLPCRVYLRHCVLAAKNL DDTAYNNFLDHTYLADRKTTIREYLATTGSGIMEEEPPKSVKYRYGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 21 | 7 | - | – | |
| Phobius | 22 | 287 | 266 | - | – | |
| PANTHER | 37 | 287 | 251 | 1.9E-139 | – | |
| PANTHER | 37 | 287 | 251 | 1.9E-139 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0253200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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