Transcript — View — Lotus Base

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LotjaGi6g1v0259500.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0259500
Transcript ID	LotjaGi6g1v0259500.1
Lotus japonicus genome version	Gifu v1.2
Description	GDSL esterase/lipase family; TAIR: AT2G23540.1 GDSL-like Lipase/Acylhydrolase superfamily protein; Swiss-Prot: sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230; TrEMBL-Plants: tr\|A0A151RDC5\|A0A151RDC5_CAJCA GDSL esterase/lipase family; Found in the gene: LotjaGi6g1v0259500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:57228131..57230394) extracted from Lotus japonicus Gifu genome v1.2.

CCCCTGCTTCAAAAATTGATCTAATTCATTTTCTAAAACTTCCTTTTCCAATGGGTATCACTTTATACTTGAAAAGAACA ACCATTCTCAGGATTATGTTTATGGTTTTCAAGGTCTTGCTCTTGTTAAGGATTGGCATTTCAAGTGATATTCCAGCTTC TTTTGTCTTTGGGGATTCTCTGCTGGATGTGGGGAACAACAACTACATTTACTCACTGGCCAAGGCAAATCATGACCCCT TTGGAATTGATTTTGGAATGCCAACAGGTCGTTTCACCAATGGAAGAACAGTTGTTGATATTATTGGTGAGACTTTGAGA GAGTTTTTCTGTTAGGTTCAATCTTTTTTTTTTAATCATATCAATTAATTTCTCTTTGACTACCAGAGCAACAACTTGGT CTTGGATTTTCTCCTCCTTACTTGGCTCCTACTACTGCTGGATCTGCTGTTCTAAAGGGTGTCAATTATGCATCTGGTGC AGCTGGAATTCTTAATTACACTGGCCAGATTCTAGTGAGTTCTCTTGCTTAGCTTCAGCTAATGTTTAGTTGGCTAAGTT CTATGCACACACTTACTATTGGCTTAATTGCATACTTTTATCATTATAGTTTAGGGGGTGTGATTTTGGTCCCTATAGAT TTAGTTGCTCAAATTAAACTGAACAAATTTGGTCTAAATGTTAACTTGTCATCCAGTAACTAATAGAGAAAATTGACACA TCACAATTCTGGATGGTGAAGGTGAAATAAATTGTCTAAAAAAATCAATAAGAAACAACCTTTGAGCACTAATTAGTGAT ATTTATTTACTATTATCTAACTAACTAGTAACTACTGATATTGGATATTGAACACTAAACAGTTTTCTCAGCATCATTAG TTTAGTGAATGAGTTGCACATAATTTAATCCTTATGCCATCAGAATACAAAATAATAAGCAGAGTCTGCATGTCATTCAC AGGGTGGTCGAATCAACTTCGATGAACAGATTGATAACTTTGCAATTACAAGGGAAGAAATTATCAACAGAATTGGTGTT ACTACAGCTCTTAATTTGTTTAAAAAAGCTCTCTTCACAGTAGCACTTGGCTCAAATGATTTCCTTGATAACTATTTGAC ACCTGTGCTCTCAATTCCTGAAAGGGAGTTTCTATCTCCAGAATCATTTGTTGCCATGATGATATCAAGACTCAGAGTGC AGCTCACTGTAATTTTGCTAATTACTTAGAAACCTTGATTGAATGAAGTTCCTACTTTCTTTTATTTATCACATATATGT TAGTATATTAATTTTTGCAGCGGGTATTCAATCTAGGAGCCAGAAAAATTGTTGTGGCAAATGTAGGGCCAATTGGGTGC ATACCATATATGAGGGACTATAATTCAGAAGCTGGAGATGACTGTGTCACTTTCCCTAATGAGCTAGCCCGGTTATTTAA CACTCAATTGAAGTGCCTCATTGAAGAGCTTAGGACAAATCTGAAAGGATCATTATTTGTTTATGCAGATGTTTACCATA TTGTGGAAGATATCATCATCAATTACAATGACTATGGTATTGTCTCAATGTTTTCTTGTCCAACATTTTTTTATTAAGGT ACTTTTGGATAAATTTGAAGGGGAGTCATGGCGCAACGGTAAAAAGTTGTTGTCATTTGACTGAGATCACGGGCATAAAC GGTCTCTTGTGTAAAAATTAAAAAAACAAGCTAAGACTACATATAATAGACCAAATATTCGGACCATTCCCCGAAATCAC GAATAGCGGTAGCTTTGGTGCACCGGACCGCCTTTCTTTACATGCATAAATTTGCATAGTCCTTTCTGTATAGGAAATTA ACAACCAACCTTTTAATGTGTAACAGGTTTTGAGAACTCAAATTCCTCATGCTGTCATGTTGCTGGACGATTTGGAGGTT TGATCCCTTGCAGTGGTTATTCAGAGGTTTGTGAGGATCGATCTAAGTATGTTTTCTGGGATACTTACCATACTTCTGAT GCTGCCAATGTTGTCATCGCAGAGCGTTTCTTAAATGGTGATGCCAATGACATTTCACCTGTGAATGTTCTTCTTCTCTC CCAAGCTTGATCCACTGGATCTGGCCAATTGGATTTTTTGTGGCAAACTGCAATTTTTTTTAATTGAGCTTATTTCTACA ATGTACACGTGGTGTATTCATTTTTAAATATTAGATACCTGAGAATTAAGATCATTGCATACATCCTTACTTGTGTATTT CACAAATAAATATACAGGGACTTA

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0259500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTATCACTTTATACTTGAAAAGAACAACCATTCTCAGGATTATGTTTATGGTTTTCAAGGTCTTGCTCTTGTTAAG GATTGGCATTTCAAGTGATATTCCAGCTTCTTTTGTCTTTGGGGATTCTCTGCTGGATGTGGGGAACAACAACTACATTT ACTCACTGGCCAAGGCAAATCATGACCCCTTTGGAATTGATTTTGGAATGCCAACAGGTCGTTTCACCAATGGAAGAACA GTTGTTGATATTATTGAGCAACAACTTGGTCTTGGATTTTCTCCTCCTTACTTGGCTCCTACTACTGCTGGATCTGCTGT TCTAAAGGGTGTCAATTATGCATCTGGTGCAGCTGGAATTCTTAATTACACTGGCCAGATTCTAGGTGGTCGAATCAACT TCGATGAACAGATTGATAACTTTGCAATTACAAGGGAAGAAATTATCAACAGAATTGGTGTTACTACAGCTCTTAATTTG TTTAAAAAAGCTCTCTTCACAGTAGCACTTGGCTCAAATGATTTCCTTGATAACTATTTGACACCTGTGCTCTCAATTCC TGAAAGGGAGTTTCTATCTCCAGAATCATTTGTTGCCATGATGATATCAAGACTCAGAGTGCAGCTCACTCGGGTATTCA ATCTAGGAGCCAGAAAAATTGTTGTGGCAAATGTAGGGCCAATTGGGTGCATACCATATATGAGGGACTATAATTCAGAA GCTGGAGATGACTGTGTCACTTTCCCTAATGAGCTAGCCCGGTTATTTAACACTCAATTGAAGTGCCTCATTGAAGAGCT TAGGACAAATCTGAAAGGATCATTATTTGTTTATGCAGATGTTTACCATATTGTGGAAGATATCATCATCAATTACAATG ACTATGGTTTTGAGAACTCAAATTCCTCATGCTGTCATGTTGCTGGACGATTTGGAGGTTTGATCCCTTGCAGTGGTTAT TCAGAGGTTTGTGAGGATCGATCTAAGTATGTTTTCTGGGATACTTACCATACTTCTGATGCTGCCAATGTTGTCATCGC AGAGCGTTTCTTAAATGGTGATGCCAATGACATTTCACCTGTGAATGTTCTTCTTCTCTCCCAAGCTTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0259500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGITLYLKRTTILRIMFMVFKVLLLLRIGISSDIPASFVFGDSLLDVGNNNYIYSLAKANHDPFGIDFGMPTGRFTNGRT VVDIIEQQLGLGFSPPYLAPTTAGSAVLKGVNYASGAAGILNYTGQILGGRINFDEQIDNFAITREEIINRIGVTTALNL FKKALFTVALGSNDFLDNYLTPVLSIPEREFLSPESFVAMMISRLRVQLTRVFNLGARKIVVANVGPIGCIPYMRDYNSE AGDDCVTFPNELARLFNTQLKCLIEELRTNLKGSLFVYADVYHIVEDIIINYNDYGFENSNSSCCHVAGRFGGLIPCSGY SEVCEDRSKYVFWDTYHTSDAANVVIAERFLNGDANDISPVNVLLLSQA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	11	11	-	–
PANTHER	PTHR45650 View details on PTHR45650 Search for proteins/transripts with this domain View external data on PTHR45650	8	366	359	5.5E-199	–
PANTHER	PTHR45650:SF28 View details on PTHR45650:SF28 Search for proteins/transripts with this domain View external data on PTHR45650:SF28	8	366	359	5.5E-199	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	12	30	19	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	12	31	20	-	–
Gene3D	G3DSA:3.40.50.1110 View details on G3DSA:3.40.50.1110 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1110	27	353	327	2.3E-42	IPR036514 Show description in modal box View details on IPR036514 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	31	369	339	-	–
CDD	cd01837 View details on cd01837 Search for proteins/transripts with this domain View external data on cd01837	35	354	320	6.88725E-133	IPR035669 Show description in modal box View details on IPR035669 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00657 View details on PF00657 Search for proteins/transripts with this domain View external data on PF00657	38	350	313	8.4E-13	IPR001087 Show description in modal box View details on IPR001087 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52266 View details on SSF52266 Search for proteins/transripts with this domain View external data on SSF52266	112	352	241	6.41E-7	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016788 View details of GO:0016788 AmiGO InterPro QuickGO	Molecular function	Hydrolase activity, acting on ester bonds	Catalysis of the hydrolysis of any ester bond.	Subterm of View details of GO:0016787

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0259500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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