Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0260000 |
| Transcript ID | LotjaGi6g1v0260000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prefoldin subunit 3; TAIR: AT5G49510.1 prefoldin 3; Swiss-Prot: sp|P57741|PFD3_ARATH Probable prefoldin subunit 3; TrEMBL-Plants: tr|I3SQ31|I3SQ31_LOTJA Prefoldin subunit 3; Found in the gene: LotjaGi6g1v0260000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57285983..57294140) extracted from Lotus japonicus Gifu genome v1.2.
GCAAATTGACAGGCCCAAAAAAATGATCTCTTCTCTAAAGGCCCAAAAACAATTTTCGATTGCAGCTTATGGGCTTCTGA ATTGCATGGGCTTTTCAAGCATAGGCCCATTGGACCCAGAATAAAACGACAAGGAAGAAAGCGTCGTGTCGTGGTGGTCG ATCACATTCACAGCAACAACAATGGCTGCTTCTTCGTCGTCTTCATCAGGTTCAGCGGTGACGGAGCGAAGAGGAATACC AGCTGCTCAGTTCGTCGAGGATGTCCAGACTTACCTCACACAGTTAGGCCTCGATGTTAATTCCACCCTCGCTTTTCTCC AAGAGAGGTTTGCTTTTCATCTTTTTCATAAATTCAATTTCTAGGTTCTGCTTTTGGTATTAGATCAGTGTGGTGAGTCT CTTTGTATGAAATTTCAAATTAGCAATGATGATGAGACTTAAGAGAATATAGTAAATTAGTAAGAGTAGAGAAATGCATG TGGCTTCAGAAGAATTTGGAAGTAGGTATTAGGGAATGGTTTAGAAATGAAGATTTTTCATTCAAAGGAAGGGGTAGATA GCAACTTCAGCTGCATGTATTGTAGGGTGAGGATATCAAGTTGGATGGTTTAGATTGTACCTGTGAAGCCTTTTGGTTTG GAGATTGGAAAGGTGAGGAAATTAGAAGTGACTGGATCAGTGATGTCAAATCGCGATCAGGGACCATCGCGGTGAGCCAA AAATCCGCTAGCGGGAATAGCGCGCTATAGTGGGCAAAGGGGTGATTTTGGATGCATAATAAGTTTTGTTCACTACTTCT GCACATCTGGTGTATGCTTCATTGTTGGATTAATGAATGAGGTAGCTTTGAATGTGACTATTAGTTTCTATTAATGCGAT TCGTCAGTTAAATCTCTGGAAAGTGTCGTGCTTAAGTTTTTGATTCTTTTTATATTTTTTTTAATATGGGATTTATGCAT TAGGAACACCTTACCCTTGCATTGTTATCATGTCATAACGTGTTAATTTTACAAAGAAACTAGATTTCACAGTTTACCGT TGTGTTGACCTTGAGAAACCAAAATTTCAGTCTTACTTTTAAGAATTAAGATGCACTTATGTGTGAATGATGAACCGGCA TATTTTTCTTGCAGACTTCAGCAATACAGGTTGGTTGAAATGAAGCTTCTTGCGCAGCAAAGGGATCTTCAGGTTTCATT GCCTCATATATCTATATACTATACTCTACCATCTTTCATTAAGAAGCCACGCTGAGGCATACATATAAACTTATGTTACT ATTGCTTTGTTATTATATTGATTGAGGGATATAAAGAAAAAAAATATCTTATTATATTTCAAGCTTGAGCCAATGGCATT GAGTAAGATGTTAACTACTGAAAGAGCTAGTATGCATCTTTAGGTTTCATTGCCTCGTATATCTATATACTATACCTTAC CATCTACCTTGGAGAAGCCACACTGAGGCATACAGATACACTTATATTACTAGTGCTTTTTTGATATTTTGATTGAGGGA TGCAAAGACAAAAGAATTTTGATATATATTAAGCTAGAACCAATGGCATTGAGTAAGATGTCAAATCCTAAAAGAGCTAG TATGCATTTGACATTTTTTATGCCAGTTAGCTCCTGGACAAGATCAAGCTCTTCGCTGTAACATGCCATATATTGTTATT TTGGTATGTGTGTCACTGTCATGGGATTCCATGATATAGTTTTTGAAAATGATAGAGCCCAAGGAGGCAAGTCCGAAGAG GATATAGGCCATTTGTTGGATCAATTAAGCCATGTACCAAAAGTATGGAGAGTTTATGCTATAAAGAAAGGACCTGTGGT AAATAAAAACAAATATGGGAGGAGGTTTTTATGCTAAGTGGAGCGTAATGGTGTCAGAAACGGACTTTACGAAGAGGTTG TTGAGGGAGAGGGGCAGTCTGCATTTTGAGGAATCTTTCGGCCAGAGGCTTCGGCTCACTGCTTTGGTAGCTGAGAGATT TGTCTTTTGTATTTCCATTCCTTTTTCGTGTTCATGATATCACAAGTTTCCTTTTTCTTATAAACCGAGCTCTTCCATTT TTATATTATTAATTCAGTATATTTTAGTCTGCATATGATTACTTAGTCACATCAGAAAACATATATAATGTATAACCATT CATTAGCAGACCAAACAGTTGAGTTTACAGTTGATTTGAGTTGCATTGTATTTATGATGGTAGATATAGACTCCGATCCA AAAGTTGTCATATTTTTGAACTACCACCATTCCTAACTGTCTTCATACTTGGATAAAAAATGCTGGTTTAGAATGTAATT AGTTTCAATCATAAAAATAATCTTTTTAATTGATTCAATGCAAACTTTTAAATTTAAAATGAAGTAAAACAAGTAAACTA TGCTGTTTGTTCTCACTGTATCCTTTTTGTTTCAGTATCTAACCCACATACTCTAATGATCGTATTTGTTTATGGTGATT GCAGGCAAAGATACCAGACATTGAGAAGTGCTTAGATGTTGTTGGTACGTTGCAGGCTAAGAAGGGTACTGGCGAGGTAC GTTACATAGACTTGTTAGTTACTCCCTCCATTCCTTTTTAAGTGTCGTTCTAGCATAAAGCTCTCCAACCAAGATAGTGG ACTGTTTAGAGTTTTTTTCCTATTCTACCCTCTCACATTCAAGTCATTAAGTCATAAAACTATCCAACCAAGATAGTGGA ATGTTAGTTTTTTTCACTCTCTCTCATATCATTAAGCCATTTACCTCCAATTCTAGAGGTAATGAGAATGAGAGTTATTG GGAAAGGAGAATTTTATGGAAAATGTAAAGTAGAGTTATTGAAAAAGTAAGGGTATAATAGACAAATTGTATGCTTAAAA CATCAAATGACAGTTAAATAGGAACAAAAAAAATCTTCTAAAACGACACTTAAAAAGGAACGGAGGGAGTATTATCTTAT GCCAATTCTTGATATGAATAGTCAGATTAGCTATTTTGTGACAACTGGAATATGAAAGTTTATGTATCTTATTCTGTTAA TGCATATAAAGTGGTGCTTACTATGTATGCCTTAAGTTTAATACCTTTTGTGCATCCTAAAGACTTTCTGATTTCTCGTA GAAGAACTAATTTCTTGGCTCAGCTTTCCTAGTTCGCTTCTAAAATAGAGGTGTTCACATTCCGCCTTTGCTTGTTTTTT ATCCTATATGAAGAAGTTGGTGGTTCAGATTGCTTTTGTAATTGTGGTATATGTTTATAGTTGATAGTTATGCCTTTTGA GGTTTTTTTGTGTATAGTTTTTATGTCAAGTTATATATCATATGTTTATATTGAGAAGTCTCACATTGACTAGAGATATG GCCAAATAAGTGTTTATAAAGGGTAGAGAAACCCTCACCTCTAAGCTAACTTAACACAAATTTTCAGATGATATCATAGC TTATCCTAGATTCGTTTATTGAAGACTATCCATATACGGGTCACCCGCAGATGTTCACTCATGCAAATTCCACGCTCTAG ATGTCCATCCCTGGGTGTGAGGGGGTGTGTTGAGAAGTCCTACGTTGACTTGAGATATGACCAAATAAGTGTTCATATAG GGGAGCAACCCGTATCTCTAAGCTAGTTTTTGGTGTAGAGTTAGGCCTAACCCAAGTTCTAAGAGTTTCTTCTGTCAGTT ACCATTTCTATTGGCAAGCCCTAATAGTTGATTCATTCTTTCAAGCTACGTACATTCTGCTTTTGTGCTCATCCCCTCAT CTTACAATGTAGGTACTAGGTACCATGATTAATCAGTTAGGTAGCCCCACCTAATTGTTTGAAATTAGTTAGCCTAAGAT AGATAGAGAGGGTAGGATGGGAACAATGTCTGAATAATAGGAGGGAAAGAAAAGGGGAGTATTAGTCATTGGGTGGAAGT TAGGCCTTTGGGAAAAGGAGGTGCAGACCCTTGAAGTTCTGCACAATTCTTTCTGTCATTGGTGTATTTGTTTGTATTTC TTGCAATAAAATACCAAGTTCCTATGCTCTTTCCCAATATATAGATGCAGTTCTAGACACAGGTGCAAGAGTATTCATGT TTTTGCTCAATGTACTGTGTCAGTTTCATATTATATGCTCACACTTGTTAGGTTCTTGCAGAATTTAGGATAAGCTTTTC CAGTTTGTTGTTCTGATGGGATTCAGTATCGCCATTACCGTCATTTATGTAAAATATGGCATGTTTGAAGCACCAAGGAT GTGCAGAAATTATTCAGTTGTGTATTTTTATTTTGTATGGTAGGTAGATTTCATTTGACGGAATGAAGGAAAATATACAA AAGAAACTGTCTGTGGACAGATGTTGGACTGATACCTATGCATAACAGCATAGTTTTATTCATTATTTGCTAGGTTTTCA TTTTTATTTATGAGGTTGGCCCTGAATACTTGTATAAACTACTCTCTGGAGCTGTCTAGGTGCTCAAGAGTAAAAGGCCA CTATAGTAGTGTTTAATGTGAAATCTAATACAACAACATGAAGCCTTCTCCTACCCAGTGAAGGTGAACCATCGATGGAT CATGTCTAATGATAAGATTTAAATCAAGATCCTTCTCAATGGTTTCTAAAATTTTCGTTTCCCTTTACCTCTAACAATTA GACTGTCCTCCGTGTGGTCTACCCTCCTTATTTCCCTCTTCAATTTTAATATAAGTAACCTGATCATGTAAATAGTTGAT TTTTTTTATTGTTTGGGTAGTTTTGTTATGTATGGACATTGTTGCTGGCTGTGAGTGTCTGAAGTCTGCATACATGAGCG TTATCTCTGATGCTGTCTAACACAACTTTTGCAATTTTATGTTGCCTATTAAATATAAATGGTATTTAGTCTGTTACAGT ATATAGTTAGACTGTTATTAGCATATTTATTCTATGTTGACTGTTAAATGTAAGTGGTATTTAGTCCGTTACAGGCTTAC AGCATATAGTTAGAATGTTATTAGCATACTTGTTAATTCTAACTTCTTTGCTCTTGTTTGAAGTTTTTCACCTTATGAAC TTGTGTTTTTTTATTTTTTTATTTTTTTCTGAACTTAAGATTTGGATATTTGGTCATTTTATGTATGATTTTAACGTGTT TTATAACCTTGTGACTGTATGATTGGACTATTTAATTTTGTTATTGTGTTTTTCATCATTGTTTTTGGATTTTTTTTTGT TGCATTACTTTTACGTAAACCATATGATGACACCTATTTAATAATGTCTCAAATGTTTCTGCTGCTGTGAAAATCATCAG TTATGTTATAAGTTCGAAAATTTATGCTTGACTTCAAATGCAGGAACTTATTACTGATTTTGAAGTGTCAGAAGGGATAT ATTCACGAGCTCGCATAGATGAAACCGATTCCGTGTGTTTATGGCTGGGAGCCAATGTTATGTTGGAATATTCATTAGAA GAGGTACTTGTAAGCTACTTTTAGGTGTTATTACTGTTTTACCTTTCTTTTAAATTTGAACCCTGCATAAGTAGAATATA AATTTCTCTTGCAGGCTACTAGTCTTCTACATAAGAACCTGGATAATGCTAAAGCCAGTTTAGAAGTCCTTGTTGCCGAT CTACTGTTCTTGAGGGACCAGGTGACAATTACCCAGGTCAGATTGCTTACGATCTAGTGATCGATATCTTTTTGCGTTTT CTACACCTTTCCATGAAAAGTAAATCAATGTTAAAAGGGCATTGAACTTGAGCAGCATGGCAAAAGTGCCTTTCCTTGAG CCCTATACTACTTTTATATCTGAAAATTTGAATTTTCTTAGAATCATTAGCTGAAAAGATCAAATGAATATTTTGATGCA TTCGTGTAGTTACATGTTTTACAATTAATAAACTATTTTTACTGTCATATGCTACATTTTCAACAAAATCTCCTTGTGAG TCCATAAATATACTCCAGAAAAACAGGTTGGTGTTGTAGGTTGTCCTCTTGGCAAGATCTAGTTCTAAATATATTTGGGT TCCTCCATTTTAGAAATTCTATTGGTCAAAGGATTGGTGAGTTGTTGAATTATCAAGTGATACACAAAACATGAATTCTA TGTTATATATTAGGAACCGAATAGAGAATGACTTTGAATAGATACCTAGAAGGTATTAACAGGAGAGTTAATGACAGGGA GGGGTAGAACGAGAAATGGTAGAAAGTAATCAAAACAGGAGAAAACATAGAGGTGAAAATTTAGAGGGGGGCATATAAAA GTTGTGATTTCACTAGTTACTTTTTTTGCAAAGAAAATGAGAAACTTTAAATTGCAAAATTAATCAATATTAATCATTTA ATTTGGAAATTGATATTGCATCTTCATACACACATACGAACAATGAAATGCAAACTGTGGCACATCTCTATTCATTCCTT TGTATCCTTAGTAAGCAAGCATTCAAGGATGTCCTGTGAGCATTTCCAACCCACGAGTTTTCATTCCTACTGTTTCATGT CTACCTTGCACACCCTTATCCTTGTAAATGTCTCTAGGATACTTGAACACTTCTTTTTGCATGAATATCGTTGAGTGTGT TTATCAGTTATTAACCAATCTTTTCATAAGGTTCAAAAGTCAAAACAATAATTATCCTTTTTTTAACTAAAAAAATAATA GTTATCTTTGGTTATTGAATGTTTATCAATATCATATCAGGTCACGATTGCCCGCGTGTATAACTGGGATGTTCATAACC GAAGACTTCAACAAGTTGCTTCTACGACTGCTCAAGACTAGTATAATAGATAATTTGTTCACGCCTGGATCTGAAGTTGG GCACTTGTACCTTTTCAATTTAAAGTATGATTCTAATCTCTCGCCAGTTTCTAATTTAGATGAGTTGTGGGTTGCTTCCT GCCTCTAGTTCCGGTTTCTCAACAGTAGATCCTACGAGAGGAGCTATTTTTTTATATATACATTTTGGTTGATTTGTTAG TCTCTGGATTATTTGTAAAATGCCCATATATTAGGTTGAGATGGGAAAAGTTTTGTTTGGTGTGGTCATATGGATATATT CTACTATGGGATTTGGTGTTCCTTGTTTAATTTATATAGCTGATGCTAATGTTACTCATCTCCGAGTGGCTGTTCTGTGT TTAAATGCAAATTATGGAATAGGGGGATAATCAGAAGGGCCCTAAAGAAGGTTTGGATCGGTATAGTCAGAATTGATTTT CATAAAATTAATTATGGTAAAATTGAATAGTAGATGGATTTAATTTGTGCCTGGATACATTTGTAAATTGTGACATGCAT ATGTAAAATTTCACAACTGATTATGATCATGTAGAATCTAGGTTTTGTAGTTTCATTCTATTTTTGATTTTAGGACCAGA AGAACTTTTGAAACAAAACATTCAAGTCAACACCTGAATTGGTTTGAACATTTGAGAATCAATTCGGACGTTTACTAACA GGCATTCTCAACGAATGAATGCAATCTGTCAGCCTAAACTTAAAACATAAAGGACAAGAAATCTTAGTGCATGTACGGTT TTAGCTTTTGTGAACAGATGAGCCAAAATTACAGTGAATAGATGCAACATTCTTTAGCTTTTGTAACTGTCTACCGAGTT TTAGCTTTGCCGTGGTTTTCCACGTGTATGTATAATCAATTGTCTCCAACAATGTTAGCTTAAGCTTATCTTTCCTCAAA ATGGTGGTAGATCTGCAGTGTTTCTGATGAAATATAATATTGCCATTGATAGTCAAAGATGATGTTTGCATGATCAAGTC AACTGGTCAATCATACAGTCTATGAAAAGTAATGCAATAATAGAAAACTGGGTAATCCAGTAGGATCTAATAAAAAACTC TTCTTGTTTGAATGGGATGATCTACTACGAGTTAGGTTGATTGGCACTATTGTTTGTTCATGTGCCAAAACAGGCTTTTG ACATGAAGTTGATATTTGTACTGTTGGCATAATAATCAATTTTTTGGGCATAGATGGGTGTTGAATTCAAAACCATACCT GACCTTTCCAACGTATGAAGCAGAAAAGCTAATATTGTTTAATGAGGTCAGGTTTTTACTATTGTTTTATTTTCCCACTC AATCAGAAATGAGCTTTCTTTCTTCGTTTCAGCTACAAACCATGGTTTTCACTTCCACCATACAATATTATTTCTAAA
CDS sequence (LotjaGi6g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTTCTTCGTCGTCTTCATCAGGTTCAGCGGTGACGGAGCGAAGAGGAATACCAGCTGCTCAGTTCGTCGAGGA TGTCCAGACTTACCTCACACAGTTAGGCCTCGATGTTAATTCCACCCTCGCTTTTCTCCAAGAGAGACTTCAGCAATACA GGTTGGTTGAAATGAAGCTTCTTGCGCAGCAAAGGGATCTTCAGGCAAAGATACCAGACATTGAGAAGTGCTTAGATGTT GTTGGTACGTTGCAGGCTAAGAAGGGTACTGGCGAGGAACTTATTACTGATTTTGAAGTGTCAGAAGGGATATATTCACG AGCTCGCATAGATGAAACCGATTCCGTGTGTTTATGGCTGGGAGCCAATGTTATGTTGGAATATTCATTAGAAGAGGCTA CTAGTCTTCTACATAAGAACCTGGATAATGCTAAAGCCAGTTTAGAAGTCCTTGTTGCCGATCTACTGTTCTTGAGGGAC CAGGTGACAATTACCCAGGTCACGATTGCCCGCGTGTATAACTGGGATGTTCATAACCGAAGACTTCAACAAGTTGCTTC TACGACTGCTCAAGACTAG
Protein sequence (LotjaGi6g1v0260000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASSSSSSGSAVTERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQERLQQYRLVEMKLLAQQRDLQAKIPDIEKCLDV VGTLQAKKGTGEELITDFEVSEGIYSRARIDETDSVCLWLGANVMLEYSLEEATSLLHKNLDNAKASLEVLVADLLFLRD QVTITQVTIARVYNWDVHNRRLQQVASTTAQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 191 | 190 | 4.0E-67 | ||
| PANTHER | 8 | 188 | 181 | 1.0E-73 | ||
| Gene3D | 39 | 173 | 135 | 2.5E-9 | ||
| SUPERFAMILY | 43 | 172 | 130 | 8.37E-22 | – | |
| Pfam | 57 | 175 | 119 | 2.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Cellular component | Prefoldin complex | A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics. |
Expression pattern of LotjaGi6g1v0260000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…