Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0260100.1

Overview

Field Value
Gene ID LotjaGi6g1v0260100
Transcript ID LotjaGi6g1v0260100.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT2G47260.1 WRKY DNA-binding protein 23; Swiss-Prot: sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23; TrEMBL-Plants: tr|I3S218|I3S218_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0260100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57301250..57304803) extracted from Lotus japonicus Gifu genome v1.2.

GTATGATATCGATCACACTCTTTCATTATTATCCCTAATCCCCAAACTATCCCTTTCTCTCTCCCTCTCAATATCTTTTG CCATAAGCCAATATGAACAACAAGTGTTTGATGAATTAAATAGGCACACACTTCCTTTCCTTTCCTTTCCTTTTTGTGTT TTTATAACAAGATCTCTCTCATTCTCATACAAAAGAAAATATACAAAAGAAAAGAATATGTGCCATGCTCTCTCTTGATA CAACCTAGCCCATTCATTTCAAATCAATGGAGGAGACCAAAAGAAGAGACCAACTGACACACCCCACCACCAACTCATCT TCCACCACCACAGCCACCATGGCATTCTCCGACGAGATTCCGATTCCGAGCATGAGCACAACCACCACCTCTAGCTTCCT CTTCCAACCTTCCCCTGTCTCCACCATATTTGACCACCCGATGCCATCGTCCTGTCACCAAAAGGACTCATCATCCTTCA TGGATTTGCTGGCTTTCAACGACGATTACAACAACTCCGTTTTAGATTGGCTTCCGATCACCGGCGACCCGGTCAACCTC AACCACCCTCTTCCATCGCCGTCATCGGAGGTGCTGAACACTCCGGCGTCACCCAATAATTCGTGTTCGATCTCTTCATC GTCGAATGAAGGCAGCGCGAAGGTGCAGCAGAGTACTGAACCAAAAACAGAGCTGGAAGAAGAAGATAACAATGGAAATG GAGATGGAGGCAGAGGAGATGACCCTGCAGAACAAGACAAAACTAAGAAACAGTAAGTAATTCTGTAATAAATAACTAAT TAATGATTTTTTTTTTCATTTGATTTCTTTAAATTTGGTAGCATTTAATGTTATTTTTTGTGACAATTAAAGGAAAGTGG GGATAAAGTTACAGTTTCCATTAGAGGCAGGGGATTGTGTGAGACTGTGACTGTGAGTGGTGGAAATGCTGTGTGTGTTG ATTCAAGCTAGCTAAAATAGGCTTCTGTTGTTAGTGTCATCAATCATCATCATTTATTTGATGACTCTGTTTTTATTTTT CTCATCATTGTTATTGTTACTAGTCCTATTTGAGATGAAAATGATTGAGAAAAAAGGAAGAAACATTGTTATTACTTATT ATTGACAATTTATTGATGGTGATTTTGAACAAAATCTACTCAGGCTGAAAACAAAGAAGAAGAAGAATGTGAAGAAGGAA AGAGAAGCACGATTTGCTTTCATGACAAAGAGCGAGGTGGATCAGCTGGATGATGGATACAGGTGGCGCAAGTACGGCCA AAAAGCTGTCAAAAACAGCCCTTATCCCAGGTACTACCTCATTCCCATTCCCATTCATTTAATTTAATTAGCATCCATTT TCATTCTTTTTCTTTTCTCAATTACTAGTCAATTCCCTTCTCCACCTCAATTAATTCTACTAACTATAATTATTAGTATT TTTTACCTCAGCCATTATTGTATCATTATATCTACATAGTAATTTCTTTTTTTGAAAGTAATTTTTTTATTAGTAAAATA TCACATTTATTATTTATGTCTTACATATATTTTTCTATATATTTATCACTTTGAGATTTTTACACATCTAAATTAAAAAA TATTCTTGCCTTTTAAAATTTATTTTTAAATTTCTAATATACTCTTTAATCTTCATCACTTTCATTAATTTTAATTCTTC AATTTCCATCACCATTAAAATTAAGTTATACTCCTTGTGAATATTTGTCACTGTTTTGAAACAAGTTTTGTTTCTATTTA TCTATCACTCTTATAGTTTCAAAAAAATTATTATATTTTCACAAGTATATCTTTAACTTAATATAATTTTTAATAGTAAT AGGAAAATTGAAAACTCAAATAGTTTCTTAATTGTTTCCTAATGCATATACCCATTGTTAAGGAGAAAAAATATTACTCC CTCTGTTACTTTGAGTGGAGGCACACATATTAAGGGTGTGATTAATTTTGTTGATTTTTAGAAAAAGTGAGGATTATTTT TCTATTTTACCCTTTAAAATATGTGTTACCTCTCCTCATTTATTGTACTGACAAGGGTAGTTGTTGTAAAATCATCATTT AATGCTCTCTTGAAATGCTAAGTAGACAGTTAAATAGGAACAAAAAAATTTCTTCAAAGTTAACAGTTAAATAAGAACGG GGAGTATATGATATTTTAATACATTTTCAAAATCTTAAAGTGAGAAATAGTGAGAAACTAAGTTAAAGTATAATTGGTAA AATATAATAAATGTTTTTTTATTGAGTATGCTTCTTTATTTTTTACTATAGATATGTCCACACTTATATCCAACATTTTC ACATTTTGTTTTTACATTAGGTGCATTATATTATTATATTGAGCCAATGAAGTATACATATAAATTACTCAATTTCAATT TTAAAATACTCGGCCAATATCAACATCCTGCATACAATTCTTTTTCTAGCAAATCATATTATTTTTCTCCATTCTCTTCA TTTCTCTTGTACCATTAAAATTTAAGGATTTTCATACCTTCCAATATAATCTATCAATACATTGACTAATATGTTAATTT CTCTGCCATGTGAATTTCATTCATTTATGTTAATCTAATATGTTTAAAAGTTTTAAAATGGTCAGTGATCTATTTTTATT ATTTCATAGTTAGGGTTCATAGTAAAAATTTATTTTAAAATTTCATACAAAATTAGAATTGTATTAGATCATGTTAATTG GCCTGAGTAGTGGTAACAAAATTCTCCAATTCAATGTCACAGGAGCTACTACCGCTGCACGGCGGCTAGTTGCGGCGTGA AGAAGCGTGTGGAACGTTCCTCCCATGACCCTTCAGTGGTTGTGACCACCTACGAGGGACAACACATCCACCCGTGCCCC ACCACGACACGCTCCACCCTAGCCTCCTTCATGCATAATAATGAACCTTCTTTTGGCTTCGCCAATGTCAGTGCTTCACA GTATTCATCACAACACTCCTTTGCGCTCCCTCATGCATCATCAACATCTGCAACCATGTTATATAACTCATCCACAACTC CTTTGAGCACGACCTCGTCGTTTGGTGGGTTTGTTCATCAAGACCATGCTGGGAATCATTATCATCAGCAGGAGGCTATG TTAAGGGACAATGGGCTGCTTCAGGACATTATTTTGCCATCAAATATTATGAGCAATATTCAGGACAACAAGGATTCTTT CATTTAGGTTGGGCCAATTAATTGATATGATTTTGATTTTATGTGGTGCTCTATTGCTCACTAATTCAGATTATTATGAG GCTACTCCACTTTTTGGAGTTTACAATATTGAACTTTTTGAAGGTTTTTGAGTTTAAAATGACTGTTACCCTTGTTAATT ACTAGCTTATATGTGGAGGTGCCTCAGATTCCTAATTATTTTGTTAGTTTGAATATTACTATTTTGTCAGTTTGACTATT CTTTGTAATTACTAGAGATTTATTCGATGATCAGTTTTTTTCCCATTTATTGCTCTATTTTTTCTCATGTCAGTCATTTT CTCTATCCCTTTTGTATTAGATAGGATTAAGTGC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGACCAAAAGAAGAGACCAACTGACACACCCCACCACCAACTCATCTTCCACCACCACAGCCACCATGGCATT CTCCGACGAGATTCCGATTCCGAGCATGAGCACAACCACCACCTCTAGCTTCCTCTTCCAACCTTCCCCTGTCTCCACCA TATTTGACCACCCGATGCCATCGTCCTGTCACCAAAAGGACTCATCATCCTTCATGGATTTGCTGGCTTTCAACGACGAT TACAACAACTCCGTTTTAGATTGGCTTCCGATCACCGGCGACCCGGTCAACCTCAACCACCCTCTTCCATCGCCGTCATC GGAGGTGCTGAACACTCCGGCGTCACCCAATAATTCGTGTTCGATCTCTTCATCGTCGAATGAAGGCAGCGCGAAGGTGC AGCAGAGTACTGAACCAAAAACAGAGCTGGAAGAAGAAGATAACAATGGAAATGGAGATGGAGGCAGAGGAGATGACCCT GCAGAACAAGACAAAACTAAGAAACAGCTGAAAACAAAGAAGAAGAAGAATGTGAAGAAGGAAAGAGAAGCACGATTTGC TTTCATGACAAAGAGCGAGGTGGATCAGCTGGATGATGGATACAGGTGGCGCAAGTACGGCCAAAAAGCTGTCAAAAACA GCCCTTATCCCAGGAGCTACTACCGCTGCACGGCGGCTAGTTGCGGCGTGAAGAAGCGTGTGGAACGTTCCTCCCATGAC CCTTCAGTGGTTGTGACCACCTACGAGGGACAACACATCCACCCGTGCCCCACCACGACACGCTCCACCCTAGCCTCCTT CATGCATAATAATGAACCTTCTTTTGGCTTCGCCAATGTCAGTGCTTCACAGTATTCATCACAACACTCCTTTGCGCTCC CTCATGCATCATCAACATCTGCAACCATGTTATATAACTCATCCACAACTCCTTTGAGCACGACCTCGTCGTTTGGTGGG TTTGTTCATCAAGACCATGCTGGGAATCATTATCATCAGCAGGAGGCTATGTTAAGGGACAATGGGCTGCTTCAGGACAT TATTTTGCCATCAAATATTATGAGCAATATTCAGGACAACAAGGATTCTTTCATTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEETKRRDQLTHPTTNSSSTTTATMAFSDEIPIPSMSTTTTSSFLFQPSPVSTIFDHPMPSSCHQKDSSSFMDLLAFNDD YNNSVLDWLPITGDPVNLNHPLPSPSSEVLNTPASPNNSCSISSSSNEGSAKVQQSTEPKTELEEEDNNGNGDGGRGDDP AEQDKTKKQLKTKKKKNVKKEREARFAFMTKSEVDQLDDGYRWRKYGQKAVKNSPYPRSYYRCTAASCGVKKRVERSSHD PSVVVTTYEGQHIHPCPTTTRSTLASFMHNNEPSFGFANVSASQYSSQHSFALPHASSTSATMLYNSSTTPLSTTSSFGG FVHQDHAGNHYHQQEAMLRDNGLLQDIILPSNIMSNIQDNKDSFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 25 25 - –
MobiDBLite
mobidb-lite
11 25 15 - –
PANTHER
PTHR31221:SF170
20 325 306 9.4E-82 –
PANTHER
PTHR31221
20 325 306 9.4E-82 –
MobiDBLite
mobidb-lite
100 179 80 - –
MobiDBLite
mobidb-lite
100 137 38 - –
MobiDBLite
mobidb-lite
138 168 31 - –
Coils
Coil
163 183 21 - –
Gene3D
G3DSA:2.20.25.80
181 258 78 5.6E-33
IPR036576
SUPERFAMILY
SSF118290
189 257 69 1.28E-28
IPR036576
ProSiteProfiles
PS50811
192 257 66 32.42
IPR003657
SMART
SM00774
197 256 60 5.8E-38
IPR003657
Pfam
PF03106
198 255 58 7.5E-26
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0260100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…