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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0260700 |
| Transcript ID | LotjaGi6g1v0260700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G02380.1 transmembrane protein; Swiss-Prot: sp|Q3SYZ3|CR3L3_BOVIN Cyclic AMP-responsive element-binding protein 3-like protein 3; TrEMBL-Plants: tr|A0A1J7H0S7|A0A1J7H0S7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0260700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57338284..57342750) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCCCACAATGCACTAATTTTAAATGTCCATACTCAAATTGTTCTATTTATCATTTTCAAAAAAATGACAATATAATG GATGTCCATGGCCACGCAACGAAACTGAGAGGTTGCCAACTGTCGAAGAATGGCTACATCACCGTCACAGCTCTATAAAC CTGCCGTCATTGCAGAGAAGACAGCACATCCACATTCATAGAGGGAAAGATTCAGAGGGATCTTCGTTTCGTTTGGTTTG AACAAATCTTACAACTCGTTTTTGCAGTAATTTTGGGTTCTCCTTTATCCACCAACCCCTCTCTCTTTCTCTTTCTCTAT CTATAGTCTCTATCCTTGCTTGCCCCTTTTCCCTTATCTCTCACTTTCAACTCTTCCGCCATTGGATCTGGGGTTCCTTC CTCTTCTCATAAAGGTATTGATTCACTTTTCATTTTTTATTTTCTCGTTTTCTTCACTTGGTATTATATTTTATGAATCA TTGTAATGGCTGCAACTAGTTTAAAGTTGTTGACTTTTTCAGATTTCATGGGTGCCCATTATCCTCATTTTTGCAATGGG TGTTTGTATATGATATTTGATTGAAGGATTGACTTGGGGGGTGGGAAAGTTTCAACTTTTAATATATTTTTTTTCTGGGT TGGTTTGTTATAAATTATGATTCTGTGTTTGTTCAGATTAACAACCATTTCTGCCTTTGGTGGCTCCCTTCTTTGATTAT CCTCCCTCCCCCAAGCAGTTTCTGGTCTTTTTTGTGTTTTTCAATTTTTGTACAATTGTATGAATTGGTGGTGTTTTTTT CATCCTGCCACCTCTTGACACATACAAAAAAAGAAGAACATTGGAGGGAATTAGAGTTTGTAAGGTTGTTAATTAGGTTC AGTTGATTGACCTCTTGTCTCTTTCTGTGGTGCAGCTGCCTTGCAGGCTTAGTCAGTTCCTGGATTAAATTGTTTTTATT TGCTTTTGAAGGAGTGGTGGAGCTCTTGGTTAATAGAGCTTAAAGAGGAAGAGAATTTGTTTTGGGGGTTAATAGTTTCT TCATTGTTGTCTGAATCTGTGTAATGTGCAATCATAAAAGGTATCTGAATTGGGAATTGAGTTATATTGCAAGCTGTCTT CTTAATGATTTATGGTCTATTAAGCCCTTAGTACATTTCATCTGTTAAGGAGGTCATTTTGTATGATGGGTTGACGTTCA GCATTAAGTTTCTGGTGGCAGTTTAGAGGAAATTTTGTAGGGTGACAAGAAGGGAGAAGTTGAATAGTTTTGTGGCGTTT GGAATGGATCGTAGAAGTGCAAGGGATAAGGATATTGAAGTTGATATTGAGAGTGGATTGCCACTAATTGAAAATGACTC AAAGAAAGTTAATAGTCCAAGTACTTCCAAACAAGGAAAGACATTGTTTGGTAAGAGTTCTGGTGGGCCAAGTTTATACT GCAATGAAGCAAATTTAAGTGAAGTTTCTGTGGATTTGATGAATGCAACAAACAAGGCAATGAGTGTGCAAGATTCAGCG AACCATGCTGAGAAGATCATGGTAAAAGAGAAACGTAAAAAGGCCTCTAATAAAAAGGCTCCAAAACCCCCAAGACCTCC ACAAGGTCCTTCTTTAGATGCAGCTGACCATAAACTAATCAGGGAGATATCTCAACTTGCCATGTTGAAGCGCGCGAGGG TGGAGCGTATGAAAGCCTTGAAGAAGATGAAAACTGCTAAGTCATCATCTTCGAATAGCAGCAGCATGTTGGCCATGGTT TTCACTGCTATCTTCTGCATTGTGATAATCTTCCAAGGTAACCTTTGTGATAAAAGTATAATATAGCATGCATATAGCGT TTTATTTATGATCGTACGCACTGCAACATGTAGGGGTTAGCATTTTTATTTCTACCTATGCTTATTGATTCCACAAGCTT GGACATTCCAAATCTTGAGATTAGTACTTTATTACTACTTAGGTGAATAGTAACTGTAAGAAATTATCAGTTTGGTTGAA CCTACACGTTGAATAGAATTCCACATATACGCATTTATGAACCACAGGGACTGTTGAAGTTACTATTTGTTAATTATTAT CCCGTGAAATGTGGCACTTCCTATTTAAAATTTCAGCGCTTGTATTTAACATGTTGTGTGTTTAAGCACTACTCTTAAAA TTTATAGTGATAGATTAATTATTATCATTTTTTCTGTTTCTGTGGTTCCATGTTAAATTTAAGGTTGGGGGTTCCCAGCC ATGGAACAATTTCACTTTCTGGACCAGAAATTCTTCCATTCCAAAGCTCAGTTCTGTCAGATGTGGAGACAATCATTAAC TTACTTGAAAATTGGATTTCAAATCTTATAGAATCTGTTTTACATTATTAGACATGTTTCCAAGGAATATTTTTTGCATA AATTATGGCTTCTCTTGCCATGTGCTTTTCCCTTTTAGTTTGGATCTGGATAACCAACCTGATTTTAGGCTTTATCCATA TTTGCTCGCATTTTTGTGGGCGGATTCCTATCACTTTTACTCGGTTCCCTCGTAGGTCAATCTGGTAATTGTAAATCTTA ATTAATACCTTACCATTTCCAACTATCTACTGAGAATTATGATCAGCTGATCATGGTTTTGCTTTCTTTTCCTGGTCAGT TAATTAGAATCAAACAGTTTCTCTTTTACCCATTTTCTCTTTGGTGTGCTCCCAATTGTGGGCAAATGGCTGTAAGTATG CAAGATGATTGCCTGCGGTTTGGTTTGCTCTTATTTATATTTTGAGACTGTCGTAATTTTTTTACATTGCTCCACGCGCA ATTTTTTTACCATAATTTAATTTAGCATGCAAGATAGGATTAAAATGCTCCAATTGGTCTTGTTTCTGTTATGTTCTGAT GATGGAGATATGCATTAGCGCTCTTTTTTTAATTAGATGTTCCTTTAGCAGGCATATCATCTGGTAAAAGCTCAGTGTCA AGTTTCCAGGGATCTCCTCTATCAACAGGAGGAGCAGAGGGGGATTTGATTTCTGTTCAGTACCAACTCAACCCATCAAG TGACCCAAATGCACCTGGTTCAGAATCTCACAAGTAAGTTCAAATGTGCTGCTTATTGAACATATCCTACAATCTATTTC CCTTTATAAATCGCGTTCATATAAAAATACATTACAAATTTGGCAGCTTTATAATATTAATTTTGCTACTTGATGCTTCC TTGCAGTTTTGTACAGAAGGTAGCAGGGTCAGATTTTCCAGAAGAACTGAGGAAAGATTCAGGTTAACGGACAAAAAAAT GCCACTACCTGCATTCACAGAAGGAAATGATGGCTTTGTGTTCTTGTGATTCTCATGTAAACTCTTGTTTTTCTTTATGT AGTTGGTAATTTATCCCCTTCTTGTATATTAATCAATGTTGGGGGGTGAGTTAAATTACCATAGCAGAGTTGCCATTGTT CTTCATTGTCTTGCCGAAAATGTGATTTTACTTTTCACCCCCTCAGCAACTGTCTGTTGCTCATGCTCTCGGTGGAATTG AGTTAGAACTTTTGCTTTCCAAGCTCACAAAGCTTGATCCTAATTATCATGTGGTGGGGTCTTTTTGTCACTACTGGTAT ATAATTGAGTGCTGTATTACTTTCATCAAATATGGAATCAATCGAATTTGTCACCTGATTTTTCAGTTTATCATCAGCTA GTTTGTGTTAGATCTGATATCTAAGTTTGATCCTAATATCTATACTTAGGATTCAATAATTCTTTCATCTGTTTTGATAT ATTATGGGATCATATCTTAGAAGGAAAATCAGAACTAGATATGATAAATTGATAATCATTTGTTTTCCCCTTTTCATATT GTACAATAGACAATCACATTTCAGAAGAAAAGGTATTCATGAATCACTTTTCTTGTCGGCAAAAATATTTTATCATGCAG GCAAGAACCTAAAAGATGTGAGGGCACAATGAAGTTTCCATTGTGAATAAGAAAATCAACATATATTATTGATTCTTTAA CCAATATTATATTGCTTCAAGTTTAAGGGGTTGTAATCTTTAACTCAGTTTAGATTTGAGTATGGTGAATCAAATAAATA GAGATTCCAGAGAGTTTTGCTATTATAAAATGGGTTTATTTGCTTTGACTTGGATTAAAATTTGAGAATAAGAAATTGTC AGGTGTGATTGTTGATATTGTGAGATGTGATGCCATTTTGGACTTAATTATGAACAGCATAAACATGTGACGTCTAGATC TTAGATCCTAATTAGAGAATTAAGACAAGTTGACCTGCAAAGTGGAGAGATATGCTCCTAAAACACGCTGGGAGCCGTTC ATTTGAGAGTCTAAAATCAAGGATGGGTAAATTGTGCAAATATGATTATTTAATTGAAAAAAATTATTTCAAAATCTTTT GACTCCTAATTAAGTAACAAGAAAATGTAGTGTGTATATGAAAGGTTGAGTAGATTTATGATGCATA
CDS sequence (LotjaGi6g1v0260700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGTAGAAGTGCAAGGGATAAGGATATTGAAGTTGATATTGAGAGTGGATTGCCACTAATTGAAAATGACTCAAA GAAAGTTAATAGTCCAAGTACTTCCAAACAAGGAAAGACATTGTTTGGTAAGAGTTCTGGTGGGCCAAGTTTATACTGCA ATGAAGCAAATTTAAGTGAAGTTTCTGTGGATTTGATGAATGCAACAAACAAGGCAATGAGTGTGCAAGATTCAGCGAAC CATGCTGAGAAGATCATGGTAAAAGAGAAACGTAAAAAGGCCTCTAATAAAAAGGCTCCAAAACCCCCAAGACCTCCACA AGGTCCTTCTTTAGATGCAGCTGACCATAAACTAATCAGGGAGATATCTCAACTTGCCATGTTGAAGCGCGCGAGGGTGG AGCGTATGAAAGCCTTGAAGAAGATGAAAACTGCTAAGTCATCATCTTCGAATAGCAGCAGCATGTTGGCCATGGTTTTC ACTGCTATCTTCTGCATTGTGATAATCTTCCAAGGCATATCATCTGGTAAAAGCTCAGTGTCAAGTTTCCAGGGATCTCC TCTATCAACAGGAGGAGCAGAGGGGGATTTGATTTCTGTTCAGTACCAACTCAACCCATCAAGTGACCCAAATGCACCTG GTTCAGAATCTCACAATTTTGTACAGAAGGTAGCAGGGTCAGATTTTCCAGAAGAACTGAGGAAAGATTCAGGTTAA
Protein sequence (LotjaGi6g1v0260700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRRSARDKDIEVDIESGLPLIENDSKKVNSPSTSKQGKTLFGKSSGGPSLYCNEANLSEVSVDLMNATNKAMSVQDSAN HAEKIMVKEKRKKASNKKAPKPPRPPQGPSLDAADHKLIREISQLAMLKRARVERMKALKKMKTAKSSSSNSSSMLAMVF TAIFCIVIIFQGISSGKSSVSSFQGSPLSTGGAEGDLISVQYQLNPSSDPNAPGSESHNFVQKVAGSDFPEELRKDSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 233 | 233 | 5.9E-98 | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 154 | 154 | - | – | |
| PANTHER | 1 | 233 | 233 | 5.9E-98 | – | |
| MobiDBLite | 1 | 50 | 50 | - | – | |
| MobiDBLite | 24 | 44 | 21 | - | – | |
| MobiDBLite | 89 | 113 | 25 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 155 | 173 | 19 | - | – | |
| Phobius | 174 | 238 | 65 | - | – | |
| MobiDBLite | 199 | 238 | 40 | - | – | |
| MobiDBLite | 200 | 222 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0260700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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