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LotjaGi6g1v0264300.3

Overview

Field Value
Gene ID LotjaGi6g1v0264300
Transcript ID LotjaGi6g1v0264300.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description UDP-glucose 4-epimerase, putative; TAIR: AT1G30620.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9SA77|ARAE1_ARATH UDP-arabinose 4-epimerase 1; TrEMBL-Plants: tr|A0A072VG20|A0A072VG20_MEDTR UDP-D-glucose/UDP-D-galactose 4-epimerase; Found in the gene: LotjaGi6g1v0264300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57781852..57784963) extracted from Lotus japonicus Gifu genome v1.2.

TTGTTAGAGATGATGAGCTGTTTTTACTCTTTATTTATTCAAAGAATAATGAAACTTTTCTATTTTAATTGGGTTTTCAC CAGTGTTGTCAGAAGGATACAAGAAAGAAAGAAAATAGATGAAAGAAAACTATAAGGATTTACAAGGGGGAATTTATAAA AGATAGGATGTATTATTTTCAGTTGATAATTTTCTTTTTCTTTTTTTGCTATTATTTGGTATTCAAATCAACATCCATCT TACCCTTTTATTCAATTTGGTGATTCTGCTTCTTCTTTTTTGGGCCAGTTTTCTGTCTCTGAACCAGGGGTCACTCATGT ATTAGTGACAGGAGGTGCAGGCTACATCGGCTCACATGCTACCTTACGGCTACTGAAGGAGTCTTACCGTGTCACCATAG TAGTATGTCTCTTCATATTATTGAAAACTTCTCTGACAAAATAAATGCACGGCACTCATCAGTCTGACATTTTCTCCCTT GCAGGATAATCTGTCACGAGGAAATTTAGGTGCCGTCAGGGTTCTTCAAAACCTATTTCCAGAACCTGGAAGGCTTCAAT TTATACATGCTGACTTGGGAGATTCGAAATCTGTATCCTTGTAATATTTCCTTGTTGCCTGAAATAATTTGGTGTTGAAT GTTAACTTTGATTGAAGCATAGTGTTAGAGAATGCCCCAGAGAAATTGTGTACTTGACTGGTTATCAGGTTAATAAAATC TTTTCAGAGAATAAATTTGATGCTGTGATGCACTTCGCTGCTGTTGCATATGTGGGAGAAAGCACACTTCACCCTCTTAA GTAAGTACTTGTAACTTTTATTGGGGACATTATTTCCAGTTGAACAATTTGTGGGAAGTAGTAGTATACAATTTGTGTGC ATTTCTAATTTCCTCCATAAGTAGCATGAACAACAGATTGGCTTTTTAGACACAAATTGAAATTCTCAATTTTATATGAA TTCTCTTTCAAGGTTTGTTTAACTAAGGTCTTGGTTTTGTGGATTCAATATGCTCTGCCTTTGATAATATACCTCTCTTA GTTAAGGTTGACATTCCTATCATTACCTTCATAGTGGTTTACTCAAAAGTTATCTAGGCCCAAGGAAGTTCCAAATAAAA AAAGTACATGATTGTGAAATGAATGTTAAGGTTGGCAAAATCAAAATTGATTCTAAGTCTAGATTATTTGGGATAAAGAC CTAAATTTGTTTTATGGGATTATGTCTATATGTTTTATCTACTATGACTTATTTTAATTAGATTTAGCTGAGATGGATCA GTGTTAAAATTCATCGATTTCAATTCTACTTTTTTATGTTGTATAACTTGTTTGTCAGGTATTATCACAATATTACATCA AATACCTTGTTGGTATTGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGG GGAACCGGAAAAGATGCCCATTACAGAAGAAACGGAACAGGTGTGAAATATTCTAAGTGTGACTGAATGTGAACTATAGT TGAGAACTTTCGTTTTTAACTACAGTCTATGTCTAATGTTTATTTGGTTACTTTAATGAACATTGAAACCTATGTTAAAT TGATATTCTTCAATTTCAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGATATCATCCTTGATTTTT CTAAAAATTCTAAGATGGCCGTAATGATTCTGAGGTTTGTACTTTGCATTTAAGTTATTAGTGATTTCTCCAATGTTTCA AATAGCTTTTTTTTATGTCTTATTCATGTGCCCTTTGTTTCTTAAGTTATTAGTAATTCTGAACATATCTTACATGTAAG GAAACCTTGCAACAAGTGTTCCACGGTTTAAGTCAAATGCATTTTGTGATTTTTATTTTCTTTGTTTTTTGGCATATAGA TGTTATGAATCCTTATTATTAATGCAGACTTCTCATAATCTGCTATTATATATGACATTTTCTTCTGGGAAGGTTTGATT TGAAGGTGACCTAGACATGCACCTTCATGTGACAAAAATCTTTATTGCCATGTACTGATAGGAAAAGAAGTATCAGTACT TTTGGATTTCATAACATAAGTAATTGTTAATTTCAAGTTAATAATTCCTACTATCTATGGTTTGTGATTATTGATAACTT TTCTTTGGGGAACATTCAGATATTTCAATGTGATTGGATCAGACCCTGAGGGCAGATTAGGTGAAGCACCGAGACCTGAA CTTCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTGGCATTACATCTGGCTTAAAGGTATCCTGCTA TTATAATTTTTACTTTATTCTTGTGCTGTTTTATTTTATAGAGAAGCTTAAGCCATCTGATTTTCCATTATGTAGAATTC TTCTATATATTATAATTTATTTCACTCTAGTCTGCTTTCACAGCCAACTTGAAAACCAGCCAAAAAATTGTTTCTGAACT AATATGCCGGTATATAATGAATGTGTACTCATTGTATTTGTTGCCACAATTTGCAGGTTAAAGGAACAGACTATAACACC CCTGATGGAACATGCGTTCGAGATTATATTGATGTAACTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAAGGCACA ACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGGAAAAGGTAAGTTTAACAATTTGAATATAGCATACTTGGACCAGC TTCTCTTTCACCAGAATCAATTCTGAAACCCGAAAGCTACCCACAGATTGATTCTGGCTTCAGAGTCAATTGTAGAAGTG TTTCCAAACTTGGACATAGTCTATCCACATGTTTCATAGTTATCTCAAAAGTTCTCATAGTGGGGTTGTTTCCCAGGTAG ATCAGTGAAGGAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCCGCAGGCCCG GTGATTACGCTGAGGTTTATAGCGACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACTGACCTTCAA AAGAGCATACAAGTTGCATGGAAATGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0264300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACTTCGCTGCTGTTGCATATGTGGGAGAAAGCACACTTCACCCTCTTAAGTATTATCACAATATTACATCAAATAC CTTGTTGGTATTGGAGTCTATGGCTAAATATGGTGTGAAGACGTTGATATATTCTAGTACATGTGCAACATACGGGGAAC CGGAAAAGATGCCCATTACAGAAGAAACGGAACAGAAACCAATTAATCCATATGGAAAAGCCAAGAAGATGGCAGAAGAT ATCATCCTTGATTTTTCTAAAAATTCTAAGATGGCCGTAATGATTCTGAGATATTTCAATGTGATTGGATCAGACCCTGA GGGCAGATTAGGTGAAGCACCGAGACCTGAACTTCGAGAGCATGGTCGAATTTCAGGCGCTTGCTTTGATGCAGCTCGTG GCATTACATCTGGCTTAAAGGTTAAAGGAACAGACTATAACACCCCTGATGGAACATGCGTTCGAGATTATATTGATGTA ACTGACCTGGTTGATGCTCACGTCAAAGCTCTTGAAAAGGCACAACCTGGTCAAGTTGGGATCTACAATGTTGGCACTGG AAAAGGTAGATCAGTGAAGGAGTTTGTGGATGCTTGTAAAAAGGCCACAGGGGTGAACATCAAAGTAGACTTCCTTCCCC GCAGGCCCGGTGATTACGCTGAGGTTTATAGCGACCCGGCTAAGATCAGACGTGAACTGAATTGGACTGCACAACACACT GACCTTCAAAAGAGCATACAAGTTGCATGGAAATGGCAGAAATCGCGCCCTGATGGTTATGGTGTATCATCTGCAATCTG A
Download CDS Sequence

Protein sequence (LotjaGi6g1v0264300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHFAAVAYVGESTLHPLKYYHNITSNTLLVLESMAKYGVKTLIYSSTCATYGEPEKMPITEETEQKPINPYGKAKKMAED IILDFSKNSKMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGITSGLKVKGTDYNTPDGTCVRDYIDV TDLVDAHVKALEKAQPGQVGIYNVGTGKGRSVKEFVDACKKATGVNIKVDFLPRRPGDYAEVYSDPAKIRRELNWTAQHT DLQKSIQVAWKWQKSRPDGYGVSSAI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43349:SF42
1 264 264 2.8E-169 –
Gene3D
G3DSA:3.40.50.720
1 197 197 4.9E-88 –
PANTHER
PTHR43349
1 264 264 2.8E-169 –
TIGRFAM
TIGR01179
1 259 259 1.1E-93
IPR005886
Pfam
PF16363
1 239 239 4.2E-31
IPR016040
SUPERFAMILY
SSF51735
1 259 259 2.73E-60
IPR036291
Gene3D
G3DSA:3.90.25.10
115 253 139 4.9E-88 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003978
Molecular function UDP-glucose 4-epimerase activity Catalysis of the reaction: UDP-glucose = UDP-galactose.
Subterm of
GO:0006012
Biological process Galactose metabolic process The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0264300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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