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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0268100 |
| Transcript ID | LotjaGi6g1v0268100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fatty acid 2-hydroxylase-like protein; TAIR: AT2G34770.1 fatty acid hydroxylase 1; Swiss-Prot: sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1; TrEMBL-Plants: tr|A0A072V5H1|A0A072V5H1_MEDTR Fatty acid 2-hydroxylase-like protein; Found in the gene: LotjaGi6g1v0268100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58293891..58296367) extracted from Lotus japonicus Gifu genome v1.2.
AGGATGGTTGCGCAGAACTTCGTAGTTGATTTGAGCAAGCCCCTTGTTTTCCAGGTACAGGGACAACCCTTCAAGTTCTT ATTTCAAACTACATGCCCTGTTTTTGCAGTATAATTAGAATGTCATATAGGTTTCTTTCTGTTTATGGGTTAACATAGGT TGATATAACAAGTGGATGCTTATAAGTTGTACCCTAAGTAATCGTTGAGTGAACCTGACCAATTTTTTTAATTTCTATAG GTTGGACATCTTGGAGAAGCTTATCAAGAGTGGGTTCACCAGCCCATTGTTAGCAAGGAAGGCCCCCGTTTCTTTCAAAA TGATATTCTGGAGGTATAGACTACAACTACAAGAACGAAAGTCTTGCTACACTCAGTGGTGTTGGTTAGACAGAGCAATT GATGCCATGGGCATCATCAAAATCCAAGTTTCTAGTAAAACCATTTAGATAATGGTCTTTTTATTGTTTCTCCAAATTTT TTCTTTGCTACCTCCTCTACTTTTTATTATGACTATTTTCCAATTCATCTACTTTTCTCATGGAGCTTTTATTGATCTTC TTCTCACATGACTAAACTTCATGAGGCGAGTTTCAGTTTTCTTGCCCTAAATTGTTTATAATCTAAGTTTTTCCCTGGCT ATTCACTCAATTTTTTTTTCACGTATTTATAATTTTCTACTCATTCACCTGTGCATTACCATCACCAATACATTTATTTT TTGCTCTTGTCCACCCATCACATCCAACATTTACTGCCATAGCGGCTAGCGCAATGCTAGTAATATAGCTTTCCGATAAA TTTTGATGGGCATGTTGCAACTAATTGGGATTATGGATCTATCTTCAATTCTTCTATCAATCGACCACATTAAAAAAATT TAAATTCTATGTTCTGATAATTCATTTTAAGATATGAAGTGTTCTTGACTTGTTATTACTTGGAACAGTTCTTGACACTC ACAGTCTGGTGGGCAATTCCTGTCATTTGGTTGCCAGTTGTATGTTGGCTTGTATATAACTCTATTCAAAGGGGCCTCAA TTGTCCTCATGCAGCTCTAATGGTGGTTCTTGGCATTTTCGTGTGGTCATTGCTGGAATACTCATTGCACCGTTTTCTTT TCCACATTAAAACAAAAACCTACTGGTTAGATCTCTCTCTCCCTCTCCCTCTCCCTCTCTCTTGCCTTTTTTTCCACATA ACAAAATCATATATTAATTTTGAGAAATGCTACCCAACCAAACATCCTCTCCAACAAGCTCTTTTCAACACATATTATTT GATAAAATTCGCGTGGTTCCACTGAGGGTGGATCTTACCAAATGGGGAAGTGAAGCTCCAAATGATTTAGTGGGTCCCGT ATCAATTTCACATAATGATAAAGTGTGTATTGGAAAAAGCTTGTTGCTAGCCATATTCGATAGTTTTTGCTTGTAGTTGT CTTTTACCATGTCTGCTTAGAGTAACTACTTATTGATTTGGGTAACACTGAAAGCTTGTGTCCTTTTTTGTTCTTTTTTT GGTTAACTATTGGTTCAGGGGAAATACCATGCATTATCTTCTCCATGGCTGCCACCATAAGCATCCCATGGATGGCTTGA GACTTGTTTTCCCCCCTACTGCAACGGCTATATTATTGTTCCCGGTATCTTCTATGCCATATTATATACTGCTCTCTTTC ATAATTTATTTGCTGCTCAGAGAATTATGGGATTTTAAATTTCTTCTAAGTCAGAAAGTGTACCTTTTCTTTTTTATCTT TCTTCTCTGTTTGAATAGAAACTTGGCTTGCTTAAGTTTTTTGGTCCTTTTATTGTCACAGTAACAACCTATTCATGTTA GTCATTCTTTTTCAGTTTGTTCATTTGAATAGAAACTTGGTTTGAATTTATTTTTAGTTTTATGTTTGAAAAGGATAGTT CTTCCCCAAATAATTATTTGACTTGTTTATACTCTCATTCCGTGATAGGAGCTTAATAAAATCAAAGAAATGTTGCTTCT GGATTGCTTTGCTGAAGTCACATAAGAGGCTTCAGCTTTGTAGACCAAAATTTGTAGCTTTCTTTCGAAAATGGCTAGAA TACTTTTTGACATTTTATAAAATTATTTGATTAATCATCAATATAGATATGTCAGGAGGATTGGTAAGATCTAGAGATAA TATGTGTACACACCATGGTTTAAGGTTCCTTGAAGTGATGTTGGTGTTTTTGTCTGCTGTGTCATCCAGTTCTGGAACGT GGTGAAGCTCATGTCCACCCCTTCAACTGCGCCTGCTTTACTTGGAGGTGGCTTATTGGGTTATGTAATGTATGATTGCA CACATTATTACTTGCACCATGCTCAGCCGAAGACTGAAATTCCCCGAAACCTCAAGGTACAGACATTTCCCTCCTTTAAC TGTGGATGGCAATTAAATTACCATTTATTGCTCCAATGCTGCTAAGAAAAACCATTTTGTTCTATATCACTGATTAG
CDS sequence (LotjaGi6g1v0268100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGCAGAACTTCGTAGTTGATTTGAGCAAGCCCCTTGTTTTCCAGGTTGGACATCTTGGAGAAGCTTATCAAGA GTGGGTTCACCAGCCCATTGTTAGCAAGGAAGGCCCCCGTTTCTTTCAAAATGATATTCTGGAGTTCTTGACACTCACAG TCTGGTGGGCAATTCCTGTCATTTGGTTGCCAGTTGTATGTTGGCTTGTATATAACTCTATTCAAAGGGGCCTCAATTGT CCTCATGCAGCTCTAATGGTGGTTCTTGGCATTTTCGTGTGGTCATTGCTGGAATACTCATTGCACCGTTTTCTTTTCCA CATTAAAACAAAAACCTACTGGGGAAATACCATGCATTATCTTCTCCATGGCTGCCACCATAAGCATCCCATGGATGGCT TGAGACTTGTTTTCCCCCCTACTGCAACGGCTATATTATTGTTCCCGTTCTGGAACGTGGTGAAGCTCATGTCCACCCCT TCAACTGCGCCTGCTTTACTTGGAGGTGGCTTATTGGGTTATGTAATGTATGATTGCACACATTATTACTTGCACCATGC TCAGCCGAAGACTGAAATTCCCCGAAACCTCAAGGCTCCAATGCTGCTAAGAAAAACCATTTTGTTCTATATCACTGATT AG
Protein sequence (LotjaGi6g1v0268100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAQNFVVDLSKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFQNDILEFLTLTVWWAIPVIWLPVVCWLVYNSIQRGLNC PHAALMVVLGIFVWSLLEYSLHRFLFHIKTKTYWGNTMHYLLHGCHHKHPMDGLRLVFPPTATAILLFPFWNVVKLMSTP STAPALLGGGLLGYVMYDCTHYYLHHAQPKTEIPRNLKAPMLLRKTILFYITD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 199 | 199 | 8.2E-109 | – | |
| PANTHER | 1 | 199 | 199 | 8.2E-109 | – | |
| Phobius | 1 | 48 | 48 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 49 | 71 | 23 | - | – | |
| Phobius | 72 | 82 | 11 | - | – | |
| TMHMM | 78 | 97 | 20 | - | – | |
| Phobius | 83 | 101 | 19 | - | – | |
| Phobius | 102 | 135 | 34 | - | – | |
| Phobius | 136 | 154 | 19 | - | – | |
| TMHMM | 136 | 154 | 19 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| Phobius | 166 | 184 | 19 | - | – | |
| Phobius | 185 | 213 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0268100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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