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LotjaGi6g1v0274900.1

Overview

Field Value
Gene ID LotjaGi6g1v0274900
Transcript ID LotjaGi6g1v0274900.1
Lotus japonicus genome version Gifu v1.2
Description Transcription elongation factor SPT4 homolog; TAIR: AT5G08565.1 Transcription initiation Spt4-like protein; Swiss-Prot: sp|Q8LCQ3|SPT41_ARATH Transcription elongation factor SPT4 homolog 1; TrEMBL-Plants: tr|I3SN22|I3SN22_LOTJA Transcription elongation factor SPT4 homolog; Found in the gene: LotjaGi6g1v0274900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59170612..59173524) extracted from Lotus japonicus Gifu genome v1.2.

AAACAGCGCAATCGGTGCTCAACGCTGAACTGAGGTATAGGGTTTGAGTGTTCAATCTTCATCGTCTTTCTCTTCTCCGT TGCGAATGTTACTGTATTTCATCGTGACCTTCTCTAATTTCTGTATCTACATTCAATCACAGGCTCCGATTCATCATTCA CCATCACATTGCGCAATTTCACCATCGTTGAATCAATCTAACCATCACCTCAAACAACGACAACAATGTCAAGGGAACCT GCTCAAATTCCCACAAGCTTTGGCCACGAGTTGAGGGCTTGTCTCCGTTGCCGCCTCGTCAAAACCTACGATCAGGTAGA TTTCTTTCTCATCATTCCCTCGTTTTTTGTTGGTTTTCCATAAACCCTAAACAGTTGTTATTGTATTTTGGTTTCACAGT TTAGAGATTCAGGTTGTGAGAATTGTCAGTTCTTTAAGATGGAAGAAGATCATGAGCGGATTGCGGATTGCACTACCCCC AATTTCAATGGGTTTGTTTGTTACTGTGTTATCAAATTGAAACCCCCTTTGAATTTCTCCGTTCTTATTTTGTTGTTGAT TTTTTGCTACAGGATTATTTCAGTCATGGATCCTAGTCGGAGCTGGGCTGCGCGTTGGTTGCGAATTGGTATTTTTCTTC TAGCTTCTGTTAGTTGTTAGTTGTGCTCATTGTAGTTGTCATTGCCTTGGCTGTTGCTAATAAGGAATCAAAACAAATGG GGTTCAGAGGGATATATTGTTTCAATTTGTATCTTGCATTACTAATTTGCTATGCTGATTTCCCTTATATTCGGGTGGAT AATGGATATCATGTTGCTACTTTGTCATATATTCTCCTTTCCTCCTTCAATAAATTTGTCTAGTGTTATGGGAAAGGGGA AAGGAAAATAAAAGAAAAAGCCATAAGTATCAATTCATGCAAATATTTGATCATTCGGAATAGTTTCTTTCCAAAGAACC AGCTAAATTACATGCCATCTGAGTGAACTATTTGAAGAGTAAAAGAAAACAAAGATAAATTTTTGTAAATTGAATTTCTA TTTTGATTGAAATCTTGTACTGTGGTTCACTTGTTGAAATTTAGATTTTCCTTAAATATTTTGCAGGAAAATTTGCTCCT GGTGTTTACACTCTGGCTGTCTCAGAGGCTCTCCCGGAAGAGATGCAGGTTTGTATTTTTCTGTTAGTGTGACTTAGATT TCAGCATATATTACTATTGTTGTTAAATAGTGATTTTGTTTTCCTGAATTCATAAGTATATCTCTTCTAGTATAGGATTT GACAAATAATCATTTGAGCTGGGCTGGGGGACACAGCTTAATTAAGCGCTAATGTAACATCTTATTTGGGAATCTTATTG CAATGAGGTTAATAGAACTTATAAACATATATGTAAAAGGAATGACAAGCACAATTGAGGGTGGGGGGGACCAGAATGTG AGTTGGTGACCGATCATGGTGGGCAGGAATTAAAAAAGCATGCAAAATGTCACCAATGATGATGGAGAAGGAATGGCTGC CAAAACAGAGCCCGTAAACATGGTCAGACAACCTAAGGTGCCTGAGAGTGCCTCTAGAATAATAAATTGTGCTGAAGGAG AAAGGAGATTTAAGAGATGAATATTATGATGCCTGATGGCTGGTAAAATAAATACATACACTGTAAAGCACAGTGGAAAA ACATGAATAGCTATAAAGAGGTAACATAGCCTTGGATAAAGATTAGAATCACTTAATCACAAGTTGAAATTCCAGATATT AGTTTTGTTGTGAGTCACATCCTCTATTCATGATTACATCCTGTGTTTCTTTTGCTGTGAGACATCCTCTATCCGTCCCT CATTTTGTCTCTTTTTGCTGTTAATATTGATATCTTTGGTACCACCTATCTCAATGAAATCTAACATAACAGAGTACCTC GGCCCCAGTCTCTATTTGACTAGTTAAATATGCCGAGATTGATGATGTTGATTGTGTGTCAATATCTGACTTTAATTATG TGTTATGCATGTTCTCTCCCCCCCCACCATCTTCAGTGTAGCCACACTTCACTACTATTTGCATCGTCACTACTACTTAT TTTTCTTTTGTATCTTCATATTTTGCATTTAAATAAATTTTGTTTTTGACACTTCATTCATTTAATTGCTTTTGCAGGCT ATATGCGAAGAGGAGCGTGTGCAATATGCCCCTCCCAAACGTTAGTGAAGCACATGAATATTGGCTCTGTGATATCTTTA ACAAATTCAGAATGGAGTCTGTATTTATGTGGGTTTAATGTAGCTGTTGTGTACAAATACATTCTCTAAGTGCCTTGTTA AGCAGATGATAGTTTAGTGTGTACTTGGGGAGGTATCATGAATCAAGCATTATATACTGATGTTTTTGTCACCAATGTGT TCTTAGAAAAATCTTCTTACTCAAGGTAAATTACCAAGCTGCTCTCCTTTTGGTCATGCTAGATTTTCTTATTCATTTTT TATTTATAGACATCACAAACTAGTCAGTTTGTTTATGGGTTACAGGCTCTTCAAACGGCTGTTTGGCTTATTGCGTTTTT GTATCAGAACATGTTTAAGAACTAGTTTAGATGCAAACCAAAGAGCATTTATTGGAGTTTAGATAGTGTTTTCTTTAGTA GATAAACTCCAATACTCCGAAAGTAAATTTTAATAAGTAAGCTTTTCTGTGTTTTCCACCTTGAATCATGAAAGCTGTTA GTCAGTCTCCTTAGGTTAGTGCCAAGGTAAACTAGCCCTCTGCAGTTGTGTAAACGAAGTCTGTCATTCTTCCTGGACAT TTTGATATTTGAGTTCAAACTTATTAACGTTACTTTTTTTTTGGTCATAGGTGTTTTTGAGGATACTATTTGTATTATTT ATTTTATTCTCTATTTAGGTATGTCGATTAACA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0274900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAAGGGAACCTGCTCAAATTCCCACAAGCTTTGGCCACGAGTTGAGGGCTTGTCTCCGTTGCCGCCTCGTCAAAAC CTACGATCAGTTTAGAGATTCAGGTTGTGAGAATTGTCAGTTCTTTAAGATGGAAGAAGATCATGAGCGGATTGCGGATT GCACTACCCCCAATTTCAATGGGATTATTTCAGTCATGGATCCTAGTCGGAGCTGGGCTGCGCGTTGGTTGCGAATTGGA AAATTTGCTCCTGGTGTTTACACTCTGGCTGTCTCAGAGGCTCTCCCGGAAGAGATGCAGGCTATATGCGAAGAGGAGCG TGTGCAATATGCCCCTCCCAAACGTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0274900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSREPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCQFFKMEEDHERIADCTTPNFNGIISVMDPSRSWAARWLRIG KFAPGVYTLAVSEALPEEMQAICEEERVQYAPPKR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12882:SF4
1 115 115 1.6E-71 –
PANTHER
PTHR12882
1 115 115 1.6E-71
IPR009287
PIRSF
PIRSF025023
3 115 113 8.0E-49
IPR009287
Gene3D
G3DSA:3.30.40.210
3 106 104 4.3E-38
IPR038510
SUPERFAMILY
SSF63393
11 91 81 2.38E-16
IPR029040
CDD
cd07973
14 110 97 4.46254E-50
IPR022800
Pfam
PF06093
16 92 77 6.7E-33
IPR022800
SMART
SM01389
16 92 77 7.6E-41
IPR022800

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0032786
Biological process Positive regulation of DNA-templated transcription, elongation Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0274900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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