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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0278500 |
| Transcript ID | LotjaGi6g1v0278500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor cwc25; TAIR: AT2G44200.1 pre-mRNA splicing factor domain-containing protein; Swiss-Prot: sp|Q9NXE8|CWC25_HUMAN Pre-mRNA-splicing factor CWC25 homolog; TrEMBL-Plants: tr|I3SJK5|I3SJK5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0278500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59525977..59528907) extracted from Lotus japonicus Gifu genome v1.2.
GATTTTTCTCAGTTCTCGTTTTCCTTCTCTCTCTCGAACAAGTCGAAGGAAGAAGCTACGAAGATTGAAGAAAACCAGAG TGTTACTGCTCCATTCCCATTCCTGAAATCAAATCAATTCAAATCAAACAATGGCGTTGAAGTTTCTGAACAAGAAAGGG TGGCACACGGGAAGCCTTAGAAACATCGAGAACGTCTGGAAAGCAGAGCAGAAGCACGATGCAGAGGAGAAGAAGCTTGA CGAGCTTCGCAAACAGATCAAGGAAGAACGTGAACGCACCGAGTTTCGTCTTCTTCAAGAGAAAGCTGGCCTCGTCCCGT AATTTCCCTTCACTTTCTCTCTATTTCCCCTATCAAATCCCCAATTTTTATTCCCAATTTCAATTTCTAGGGTTAGGGTT TTCACCGCATTCCCAAATTGAAAAGCAAACTGAATTACTGATTGTTATTTTTTTCTCTTGCAGTCATCAGGAGAGGTTGG AGTTTCTGTATGATTCGGGATTGTCGGTTGGAAAAACTTCCTCTGAAGGTTTCAAATCGCTTGAAGCGTTTCCTAAATCC GATGCAGCGGATGCGCCGTCGTCATCTGCTACGGCTTCTAATGTAAGTTTGCATGATCTTTTTTTTGTTGAATTTTTGTG CTTTTTTAGAAAAAGATTTTTTTTTTTTGGTTTGTTTCTTCTGATGGGTTGATTTATGGTTGATTTGTGCAGCAGCAGCA GCAGCAGGGGGCAAGTGTGCCTGGGGCGTTGTTCGAGGATAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCATT CTGACCCTTTGCTCATGATTCGACAGCGCGAGCAGGAAGCGCTTGCGAAGATTAAAAATAACCCTGTCAAGATGGCCATC ATCAGAAAATCAGTAAGCCTCTCGTTGATTTTGGATTTGGAAATTAGATGTGAAGAGTTGAAATCTATGAAATCATACTA GTTTGGTATTTGGTTGTATGTGTTTTTAGATTGATTGAGGGTTACAAGGTAGGGACTAGTTAATTAGCTGGTTTTCACTG GCAGGTAGATACAGTTTAGCTTGTATGGAAGAAAATTTGAGATTCCCCTGATGACCTTTTTTGGTTAGGGTAATTGATTA GTTGTTACTTGTTACCTTTGACTAAAGTTAAATTGGTTCACTTGTTGGTGTGAACCAGGGTTAATATCTTGGCTAAGATG AATTGCAGTGGTCATGTTTTAACTTTTATGTAACACTCATAAATTGTTAGAACTAGCTAGTGTGTGCCCTGGGCTCTTGT TTGCTGGAGCATATTGCAGAAACTGCTGACCAACTAAAACCTTGTTAACTCATGAATTCTACGGGTCTCTCCTTGTGATT TAGTTAAGACATAGTGCTGTTACAATAACAATATCTCCCATCACCACACATTTTTGCTATTTCTCTGCAGCCTCCTTCTC CTCCTTGGTGACTTCAATTTGGGTTTAGGACCATCCATTGTCTGCAAACTTGTGTCCATAGCAGCCACCTCAGGGGTGTC CATGTTGTTTGCTACTGTTCTTGTTCATGCTATCTTCAGTTTCTGTCTGATGAAGGATTTGTATAATTCTATGCAATTGA GGATTATGTTTATGTTACTTTATAGTCTATTACACCCACATTGGGCTTTTTTCCCTCTTTATTTACTTTTTGCATTCATA GTCTTTAAATTCCATTCACTGAATAAGATGTCAAAAAGTTGTTATGCTTTACTTTCACCAAGACATTTTGTTTGACGTTT CTAATTTATGGCCATCTTATTTGTTAACAATGTCAGGTTGAAGGAAAGGAACACAAGAAGAAAGATCCAAGCAAGAAGGA AAAGCAAAAGAAGCACCACTCTAGTAAATCAAAGCACAAAAAACCGTCCGATTCCGAAGATGACACAGGTGATAGGAGAA AAGGAAAGACTGGTGAAAGAGATTTTGACAAGAAGTATCACAAGACCCAATCAGATTCAGAGTATGAATCAAGTGAAGGA GAAAGGAAAAGAAGGAAGAATCACTATGAAGATACAAAATACAGAGAAAGACCCCCCAGTCACCACCAGAGGCAAAGAAA TGTCAAAGACTATAAAGAAGATGCTGATGACAGAAACTATAACAAGTCAAAGCCAGGAAATTCAGAAGGTCGATCCATCA TTGATGCCCCAAGAAGGGGGAATGTGAGCTTTCCAGAACCAAGCTCCACTAGATCTTCTGGTACTTCACTTGAACATGGA TCACACTATAAGCGCAGAAATGCAGCTCCTAAACTTTCAGAAGAAGAGCGGGCTGCTAAACTTAGGCAGATGCAACTTGC TGCTGAGTTGCATGAAGAGCAGAGATGGAAACGTATTAAGAAGGCTGAGGAGACTGATGCACAGGAAGCAACCCAAAATA GTAAATCTGGTGGCAAGAATTTCTTGGATACTGCGCAAAAAAGTATATATGGTGCTGCAGAAGGTGGGAGCTCATCTATA GCTGAGAGTGTCCGGCGTCGGACACATTATTCTCAAGGCAGATCTGCAGGTGAAGGCAATGCATTTCGGCGGTGATGGAC TTGAATGCTGGGGTGGTTTTATCATTGTTTTTAGTTATCTCAAGTTTTCTCCAGAATACTTGGCATATGTTTTCTTCCAT GTACCAACATATGACTCTCGTGTATCAATATATGAAATTCTGTGATATTTATGACATTATATCGAGGATTCTTAGTTCTT CTTTTATGGTTCAAAATTTTCATCCTTCCTTGTGATTTTTAAGTCATGTTCCAAACTGATATACTTTGTAGGTAAACTGT TGATTTCTGTTTAGGTAAATATATGTATTATTACACGTATGTGTACTATAATTACTAATTAATTCATATTTTCAATTAAT TAATATTACATTTCAAAATGAAGAGTACGGCAATAGTTTTAAGAATTGCGC
CDS sequence (LotjaGi6g1v0278500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGAAGTTTCTGAACAAGAAAGGGTGGCACACGGGAAGCCTTAGAAACATCGAGAACGTCTGGAAAGCAGAGCA GAAGCACGATGCAGAGGAGAAGAAGCTTGACGAGCTTCGCAAACAGATCAAGGAAGAACGTGAACGCACCGAGTTTCGTC TTCTTCAAGAGAAAGCTGGCCTCGTCCCTCATCAGGAGAGGTTGGAGTTTCTGTATGATTCGGGATTGTCGGTTGGAAAA ACTTCCTCTGAAGGTTTCAAATCGCTTGAAGCGTTTCCTAAATCCGATGCAGCGGATGCGCCGTCGTCATCTGCTACGGC TTCTAATCAGCAGCAGCAGCAGGGGGCAAGTGTGCCTGGGGCGTTGTTCGAGGATAAGCCTCAGTCTGCCAATGATGCAT GGAGGAAGCTTCATTCTGACCCTTTGCTCATGATTCGACAGCGCGAGCAGGAAGCGCTTGCGAAGATTAAAAATAACCCT GTCAAGATGGCCATCATCAGAAAATCAGTTGAAGGAAAGGAACACAAGAAGAAAGATCCAAGCAAGAAGGAAAAGCAAAA GAAGCACCACTCTAGTAAATCAAAGCACAAAAAACCGTCCGATTCCGAAGATGACACAGGTGATAGGAGAAAAGGAAAGA CTGGTGAAAGAGATTTTGACAAGAAGTATCACAAGACCCAATCAGATTCAGAGTATGAATCAAGTGAAGGAGAAAGGAAA AGAAGGAAGAATCACTATGAAGATACAAAATACAGAGAAAGACCCCCCAGTCACCACCAGAGGCAAAGAAATGTCAAAGA CTATAAAGAAGATGCTGATGACAGAAACTATAACAAGTCAAAGCCAGGAAATTCAGAAGGTCGATCCATCATTGATGCCC CAAGAAGGGGGAATGTGAGCTTTCCAGAACCAAGCTCCACTAGATCTTCTGGTACTTCACTTGAACATGGATCACACTAT AAGCGCAGAAATGCAGCTCCTAAACTTTCAGAAGAAGAGCGGGCTGCTAAACTTAGGCAGATGCAACTTGCTGCTGAGTT GCATGAAGAGCAGAGATGGAAACGTATTAAGAAGGCTGAGGAGACTGATGCACAGGAAGCAACCCAAAATAGTAAATCTG GTGGCAAGAATTTCTTGGATACTGCGCAAAAAAGTATATATGGTGCTGCAGAAGGTGGGAGCTCATCTATAGCTGAGAGT GTCCGGCGTCGGACACATTATTCTCAAGGCAGATCTGCAGGTGAAGGCAATGCATTTCGGCGGTGA
Protein sequence (LotjaGi6g1v0278500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEEKKLDELRKQIKEERERTEFRLLQEKAGLVPHQERLEFLYDSGLSVGK TSSEGFKSLEAFPKSDAADAPSSSATASNQQQQQGASVPGALFEDKPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNP VKMAIIRKSVEGKEHKKKDPSKKEKQKKHHSSKSKHKKPSDSEDDTGDRRKGKTGERDFDKKYHKTQSDSEYESSEGERK RRKNHYEDTKYRERPPSHHQRQRNVKDYKEDADDRNYNKSKPGNSEGRSIIDAPRRGNVSFPEPSSTRSSGTSLEHGSHY KRRNAAPKLSEEERAAKLRQMQLAAELHEEQRWKRIKKAEETDAQEATQNSKSGGKNFLDTAQKSIYGAAEGGSSSIAES VRRRTHYSQGRSAGEGNAFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 421 | 421 | 1.6E-141 | – | |
| SMART | 10 | 46 | 37 | 1.4E-12 | ||
| Pfam | 11 | 46 | 36 | 4.1E-15 | ||
| Coils | 22 | 49 | 28 | - | – | |
| Pfam | 65 | 160 | 96 | 5.5E-14 | ||
| MobiDBLite | 90 | 135 | 46 | - | – | |
| MobiDBLite | 99 | 118 | 20 | - | – | |
| MobiDBLite | 153 | 335 | 183 | - | – | |
| MobiDBLite | 180 | 195 | 16 | - | – | |
| MobiDBLite | 196 | 281 | 86 | - | – | |
| MobiDBLite | 300 | 314 | 15 | - | – | |
| MobiDBLite | 315 | 335 | 21 | - | – | |
| MobiDBLite | 355 | 421 | 67 | - | – | |
| MobiDBLite | 366 | 380 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0278500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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