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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0278500 |
| Transcript ID | LotjaGi6g1v0278500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor cwc25; TAIR: AT2G44200.1 pre-mRNA splicing factor domain-containing protein; Swiss-Prot: sp|Q9NXE8|CWC25_HUMAN Pre-mRNA-splicing factor CWC25 homolog; TrEMBL-Plants: tr|I3S5Q7|I3S5Q7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0278500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59526008..59528739) extracted from Lotus japonicus Gifu genome v1.2.
TCTCGAACAAGTCGAAGGAAGAAGCTACGAAGATTGAAGAAAACCAGAGTGTTACTGCTCCATTCCCATTCCTGAAATCA AATCAATTCAAATCAAACAATGGCGTTGAAGTTTCTGAACAAGAAAGGGTGGCACACGGGAAGCCTTAGAAACATCGAGA ACGTCTGGAAAGCAGAGCAGAAGCACGATGCAGAGGAGAAGAAGCTTGACGAGCTTCGCAAACAGATCAAGGAAGAACGT GAACGCACCGAGTTTCGTCTTCTTCAAGAGAAAGCTGGCCTCGTCCCGTAATTTCCCTTCACTTTCTCTCTATTTCCCCT ATCAAATCCCCAATTTTTATTCCCAATTTCAATTTCTAGGGTTAGGGTTTTCACCGCATTCCCAAATTGAAAAGCAAACT GAATTACTGATTGTTATTTTTTTCTCTTGCAGTCATCAGGAGAGGTTGGAGTTTCTGTATGATTCGGGATTGTCGGTTGG AAAAACTTCCTCTGAAGGTTTCAAATCGCTTGAAGCGTTTCCTAAATCCGATGCAGCGGATGCGCCGTCGTCATCTGCTA CGGCTTCTAATGTAAGTTTGCATGATCTTTTTTTTGTTGAATTTTTGTGCTTTTTTAGAAAAAGATTTTTTTTTTTTGGT TTGTTTCTTCTGATGGGTTGATTTATGGTTGATTTGTGCAGCAGCAGCAGCAGCAGGGGGCAAGTGTGCCTGGGGCGTTG TTCGAGGATAAGCCTCAGTCTGCCAATGATGCATGGAGGAAGCTTCATTCTGACCCTTTGCTCATGATTCGACAGCGCGA GCAGGAAGCGCTTGCGAAGATTAAAAATAACCCTGTCAAGATGGCCATCATCAGAAAATCAGTAAGCCTCTCGTTGATTT TGGATTTGGAAATTAGATGTGAAGAGTTGAAATCTATGAAATCATACTAGTTTGGTATTTGGTTGTATGTGTTTTTAGAT TGATTGAGGGTTACAAGGTAGGGACTAGTTAATTAGCTGGTTTTCACTGGCAGGTAGATACAGTTTAGCTTGTATGGAAG AAAATTTGAGATTCCCCTGATGACCTTTTTTGGTTAGGGTAATTGATTAGTTGTTACTTGTTACCTTTGACTAAAGTTAA ATTGGTTCACTTGTTGGTGTGAACCAGGGTTAATATCTTGGCTAAGATGAATTGCAGTGGTCATGTTTTAACTTTTATGT AACACTCATAAATTGTTAGAACTAGCTAGTGTGTGCCCTGGGCTCTTGTTTGCTGGAGCATATTGCAGAAACTGCTGACC AACTAAAACCTTGTTAACTCATGAATTCTACGGGTCTCTCCTTGTGATTTAGTTAAGACATAGTGCTGTTACAATAACAA TATCTCCCATCACCACACATTTTTGCTATTTCTCTGCAGCCTCCTTCTCCTCCTTGGTGACTTCAATTTGGGTTTAGGAC CATCCATTGTCTGCAAACTTGTGTCCATAGCAGCCACCTCAGGGGTGTCCATGTTGTTTGCTACTGTTCTTGTTCATGCT ATCTTCAGTTTCTGTCTGATGAAGGATTTGTATAATTCTATGCAATTGAGGATTATGTTTATGTTACTTTATAGTCTATT ACACCCACATTGGGCTTTTTTCCCTCTTTATTTACTTTTTGCATTCATAGTCTTTAAATTCCATTCACTGAATAAGATGT CAAAAAGTTGTTATGCTTTACTTTCACCAAGACATTTTGTTTGACGTTTCTAATTTATGGCCATCTTATTTGTTAACAAT GTCAGGTTGAAGGAAAGGAACACAAGAAGAAAGATCCAAGCAAGAAGGAAAAGCAAAAGAAGCACCACTCTAGTAAATCA AAGCACAAAAAACCGTCCGATTCCGAAGATGACACAGGTGATAGGAGAAAAGGAAAGACTGGTGAAAGAGATTTTGACAA GAAGTATCACAAGACCCAATCAGATTCAGAGTATGAATCAAGTGAAGGAGAAAGGAAAAGAAGGAAGAATCACTATGAAG ATACAAAATACAGAGAAAGACCCCCCAGTCACCACCAGAGGCAAAGAAATGTCAAAGACTATAAAGAAGATGCTGATGAC AGAAACTATAACAAGTCAAAGCCAGGAAATTCAGAAGGTCGATCCATCATTGATGCCCCAAGAAGGGGGAATGTGAGCTT TCCAGAACCAAGCTCCACTAGATCTTCTGGTACTTCACTTGAACATGGATCACACTATAAGCGCAGAAATGCAGCTCCTA AACTTTCAGAAGAAGAGCGGGCTGCTAAACTTAGGCAGATGCAACTTGCTGCTGAGTTGCATGAAGAGCAGAGATGGAAA CGTATTAAGAAGGCTGAGGAGACTGATGCACAGGAAGCAACCCAAAATAGTAAATCTGGTGGCAAGAATTTCTTGGATAC TGCGCAAAAAAGTATATATGGTGCTGCAGAAGGTGGGAGCTCATCTATAGCTGAGAGTGTCCGGCGTCGGACACATTATT CTCAAGGCAGATCTGCAGGTGAAGGCAATGCATTTCGGCGGTGATGGACTTGAATGCTGGGGTGGTTTTATCATTGTTTT TAGTTATCTCAAGTTTTCTCCAGAATACTTGGCATATGTTTTCTTCCATGTACCAACATATGACTCTCGTGTATCAATAT ATGAAATTCTGTGATATTTATGACATTATATCGAGGATTCTTAGTTCTTCTTTTATGGTTCAAAATTTTCATCCTTCCTT GTGATTTTTAAG
CDS sequence (LotjaGi6g1v0278500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGAAGTTTCTGAACAAGAAAGGGTGGCACACGGGAAGCCTTAGAAACATCGAGAACGTCTGGAAAGCAGAGCA GAAGCACGATGCAGAGGAGAAGAAGCTTGACGAGCTTCGCAAACAGATCAAGGAAGAACGTGAACGCACCGAGTTTCGTC TTCTTCAAGAGAAAGCTGGCCTCGTCCCTCATCAGGAGAGGTTGGAGTTTCTGTATGATTCGGGATTGTCGGTTGGAAAA ACTTCCTCTGAAGGTTTCAAATCGCTTGAAGCGTTTCCTAAATCCGATGCAGCGGATGCGCCGTCGTCATCTGCTACGGC TTCTAATCAGCAGCAGCAGGGGGCAAGTGTGCCTGGGGCGTTGTTCGAGGATAAGCCTCAGTCTGCCAATGATGCATGGA GGAAGCTTCATTCTGACCCTTTGCTCATGATTCGACAGCGCGAGCAGGAAGCGCTTGCGAAGATTAAAAATAACCCTGTC AAGATGGCCATCATCAGAAAATCAGTTGAAGGAAAGGAACACAAGAAGAAAGATCCAAGCAAGAAGGAAAAGCAAAAGAA GCACCACTCTAGTAAATCAAAGCACAAAAAACCGTCCGATTCCGAAGATGACACAGGTGATAGGAGAAAAGGAAAGACTG GTGAAAGAGATTTTGACAAGAAGTATCACAAGACCCAATCAGATTCAGAGTATGAATCAAGTGAAGGAGAAAGGAAAAGA AGGAAGAATCACTATGAAGATACAAAATACAGAGAAAGACCCCCCAGTCACCACCAGAGGCAAAGAAATGTCAAAGACTA TAAAGAAGATGCTGATGACAGAAACTATAACAAGTCAAAGCCAGGAAATTCAGAAGGTCGATCCATCATTGATGCCCCAA GAAGGGGGAATGTGAGCTTTCCAGAACCAAGCTCCACTAGATCTTCTGGTACTTCACTTGAACATGGATCACACTATAAG CGCAGAAATGCAGCTCCTAAACTTTCAGAAGAAGAGCGGGCTGCTAAACTTAGGCAGATGCAACTTGCTGCTGAGTTGCA TGAAGAGCAGAGATGGAAACGTATTAAGAAGGCTGAGGAGACTGATGCACAGGAAGCAACCCAAAATAGTAAATCTGGTG GCAAGAATTTCTTGGATACTGCGCAAAAAAGTATATATGGTGCTGCAGAAGGTGGGAGCTCATCTATAGCTGAGAGTGTC CGGCGTCGGACACATTATTCTCAAGGCAGATCTGCAGGTGAAGGCAATGCATTTCGGCGGTGA
Protein sequence (LotjaGi6g1v0278500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALKFLNKKGWHTGSLRNIENVWKAEQKHDAEEKKLDELRKQIKEERERTEFRLLQEKAGLVPHQERLEFLYDSGLSVGK TSSEGFKSLEAFPKSDAADAPSSSATASNQQQQGASVPGALFEDKPQSANDAWRKLHSDPLLMIRQREQEALAKIKNNPV KMAIIRKSVEGKEHKKKDPSKKEKQKKHHSSKSKHKKPSDSEDDTGDRRKGKTGERDFDKKYHKTQSDSEYESSEGERKR RKNHYEDTKYRERPPSHHQRQRNVKDYKEDADDRNYNKSKPGNSEGRSIIDAPRRGNVSFPEPSSTRSSGTSLEHGSHYK RRNAAPKLSEEERAAKLRQMQLAAELHEEQRWKRIKKAEETDAQEATQNSKSGGKNFLDTAQKSIYGAAEGGSSSIAESV RRRTHYSQGRSAGEGNAFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 420 | 420 | 9.3E-142 | – | |
| SMART | 10 | 46 | 37 | 1.4E-12 | ||
| Pfam | 11 | 46 | 36 | 4.1E-15 | ||
| Coils | 22 | 49 | 28 | - | – | |
| Pfam | 65 | 159 | 95 | 7.6E-14 | ||
| MobiDBLite | 90 | 134 | 45 | - | – | |
| MobiDBLite | 99 | 117 | 19 | - | – | |
| MobiDBLite | 152 | 341 | 190 | - | – | |
| MobiDBLite | 179 | 194 | 16 | - | – | |
| MobiDBLite | 195 | 280 | 86 | - | – | |
| MobiDBLite | 299 | 313 | 15 | - | – | |
| MobiDBLite | 314 | 341 | 28 | - | – | |
| MobiDBLite | 353 | 420 | 68 | - | – | |
| MobiDBLite | 365 | 379 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0278500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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