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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0281000 |
| Transcript ID | LotjaGi6g1v0281000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin B-like protein; TAIR: AT4G26570.1 calcineurin B-like 3; Swiss-Prot: sp|Q3HRP5|CNBL2_ORYSJ Calcineurin B-like protein 2; TrEMBL-Plants: tr|B0I559|B0I559_PHAVU Calcineurin B-like protein; Found in the gene: LotjaGi6g1v0281000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59740419..59744357) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAACAAACATGTCTCCCCCTTCTCCATTTTCAGCTTTTTATGAATTGTAAGCTTCAATCCTCCATTTTCACCCTTT TAATTTATACATTATTGGATCTTCTCAATTATTTGCAACTTGCTTCTTTTCTTTTTCTTGAGATTTTGTTTAAAATTCCC CAACTTTGTCTACTGTTTAATTAAACTGGCTCCAATGAAAGTTAACACCTTGCTTCATGAGTGTGTTTAATAATCATCAA AGTAGATGGATTTGTTGAACATTGCAAGCATGGTATGTGCCATTTTAAAGGGGTTCAGTTCAAGGCCATGTCTAGTGTTT GTTACAAAATTGCTCTCTTTTGTTGTCTTTATTTGTTGACCATAGAGGTGAAAATCATAACTTTCTTAATGACATTGAGT AGATGGATTGATTTTTAAATATTTTCTTAGGGTAATTGGAAAGAATTTATAGGCTTATTAGTGCTTGGGAATCTAGTCTA ATATCAAACTCGAATTTGTGAATAATTTTTGAAAATGAAACAATAAAAAGAAAAAAAACATTTGTCTATGAAAACTATTT TTCAAAACTATGATAATTTTTGTCCCATGAAGTTTGCTGAGTCTACCCTTATTTAGGGCTTAGTATTACCAATTGTCACT GTCATTATGCTCCTTACTTTCTCATCATAGTTCATCAAGATGGAATCAACCACTTCTTGAAGAAACATATCATACTCAAG CAAATCTCTAACTTCCAGATCATCAAACGTACCAGATCAAATGTGATGTTGATGAGATGAAGAACAATACAAAGGAGAGG TCGGTGGTGTTTCCACCAAGGAATGATTTGCTGAAGGTTCACCAGAGCTTGCTAAGAAGGCATTTTCTGGTGTGTTTGAT GTTTAGGAAGTAAGAGACTTGCTTGCTTGAGTCTGACTTGTGTCTTTAAGAAGTGGTTGGTTTCTTCTTTATGCTCTGTG ATCTGAAGAAAAGGGAGGAGCTTAATGGCAGTGATAATGCTAGTGCATTGGAAACCCTAAACATTCGTTGCAAAGATCTG TAGAGGAATGAATAATGAGAGTTGTCCAGATGGAGAATAGTCTAATAGGTAGAGCTAGCTAGAGAGAGACCAATAAATTA TATGTCAATCCATAATAGAGATTTAAAGTTAAACATTCCATCTTCAAACTTAATTTATGATGGGATATTATATCGTATGA TTCATGTAACTAATCTCAACTAGTTGGAGAAAGTTTTGGTGTTCTTTGTTTTGCATGTTGAAATGGAATGTAAATTAGAT CATTCATGATCGGAGATTCTATTGCTTATCGTATCATTCATCTATTGTTTGTGGTATTACATGAGAAACAATATGTCGAA TCTAGTATATCATTGTTGAAGCTTTGGTTTATCTGCAATCTTTTCTAGATTTATCATAGTCATTAGTTTGCTGCAACTTT TTTGTTCACCCCTATCATGCCATGATTGCCTTGTGTCTTTTTAATTAATAGTATGTAGTCACCTAAATTATTCAGCGTTG AGAGGGGATATCAAGTTTATAATGTACAAGTATTTATTCAAATTGTAGATGATGTTTAACATATAAACTCTTCAGAATTC TAAACATGTTTACTCGCACCTTGATTGACTTGCCCTCATTTACTTGTGTATGTTGATGAAGTTTTTATAAACTGCTGATG TATGTTCAACTTGGTTGTCCATTGCTTCGCAGTTAGGAAATGTTTTGATTTCTGGGAAAGACCATGGTGCGGTGCTTCGA CGGATTGAAGCAGTGGTTTGCTGCTGCGTTAAGTTGTTTTCATGCTCGTGGTTTGCCCCCGCAACCTGCAAGAGGTTTAC GGAATCCGGAAGCACTTGCAAGAGAAACAATATGTACGTTATTATTTCCATACTTCTTTCCATTTTGTGATATTAGAAAC TTTTCAGGCCTTTGAAGATCTTGGAAATTGTTAGGTAGAAATGAACATTCTGCATCATTTTACCATTTTTCAGTAACTAA GGTTCTTGTTAAGACTTGAATGTAAGCTGTTTTAGTTTCAATGCAGTTAGTGTTAGTGAAATTGAAGCTCTCTATGAGCT CTACAAGAAGATTAGCAGTTCAATGATTGATGATGGACTCATCCATAAGGTTAGTAGTTCTATCAATTTTTTTTTGACAA TAACAACATAAAGTAGTTATGATGTTTTGTGTATATTCTTTCTCCCTATCCCTGTATTATACTCATAAGTATCTTAATTT ATATGGCAGGAAGAATTTCAGATGGCCTTATACAAGACAGACAACAAAGACAGCATATTTGCAGATAGGGTATGTAAAAG CTTTGACTTGTACTCTAGTAGTTTTGTTAACAACTCTTTTTAACCTTTTTACACTTCAAGGAAGAAGAAGGAAAAATGCA ACACAATTATTTTGGATGCATTTTAAAGAAAATCCAACTGTTACAATATATTTCTGACAGTACATTGTTTAAATTCTGTA GGTGTTTGACTTGTTTGACGCAGAGCACCATGGGAAACTTAATTTCAGAGCGTTTGTGCGTGCTCTCTCTGTCTTTCATC CCAATGCACCAGTTACTGAAAAGACTGACTGTAAGATTAATAGATTTATATGTATTAAGACTTTAAATATCTTCTAGCAA ACAATTGTGTGAAGGATTAAGGGTATTTATTCTAGAGGGTGTGATATGTTGCTTCTATTGTTGTCTGTTTTTTCCTTTAC TGTTTGGTGATTCCTAACTTTCCCTTCTTGCAGTTTTATTCAACTTGTATGATCTTAAACATCAGGGATATATTGAGAAA CATGAGGTAATTTAATTTTCTTTCTTAAACTTGAGTATCTTCTGTTTCCTTGGAGTTTGTATTCTCCAAAGTGCTTTAGC ATGTATCTGGTATATATACGCTGCCACACTGATCCTTTTTATTTTTGGCATAGTTAAAACAAATGGTGGTGGCCACTCTA GCTGAATCTGGGATGAAACTTGCAGATGATGTGGTTGATGGCATCATTGACAAGGTGACTGTTTCATTTATATGAGAACA CTTCAATATGGATGTCATGATATCATATATTCACAAGTCTAGGTTTATTGAAGCATTAATAGGTTGTTTCTTTCTTTCAT AATTTCTTTCTTGCTATCTAGAGCTGTTGCTAATGGTATTTATATTGTTCAGACATTCAAAGAAGTTGATACTAAGCTTG ATGGGAAGATTGACTTGGAAGAATGGAAAGAACTTGTCGTGACGCATCCATCTCTTCTGAAAAATATGACCCTTCCCTAT CTTAAGTAAGTTTCTTCTTCTAACTGATATTACAATTTTAGAGTGGAAACTTTCCAGTTTATGTTTGGATCTATGCTATT AATTGGTGAGTTAAAACCATGACATGATTCATTATGAGTATTATGAATGAGGCAGTAATTTCTCATCTGCTTTTCTTATG GAAAAATTTCAAAATTCTTCTTATCATGATAGCTTTCTCATATTAGTTTACAGATAAATGCTTTGGAGCTTATATGATAA ATGCTCATTGACATAAGCACTTGATTAGACTATTTACTCAAACACACCCTATATCATTGGTAGCATTTTGTGTGTGTGTG TTATGTATCTCAAGGACACATCTTTAGTTTAACATTGACTAGTATTTTGTTATTAAGTTCTAGCATCTAACATCTCTCAA ATTGTTTTCTTTGCAGGGAAATCACAACCACATTTCCTAGTTTTATCTTTCACTCACAGGTTGAAGATGATTAAGACAAC TCCATCATTGATGTCAGCAGTTTCATTGGTCTTGACTGAGAATGTTCTTTATGTTTAGCAATTAAGACTTTGTTTATGTT TTCATCAAATAGAACTTTGCCTTCAATTCCCTTTTTTGGGCAGATACTATGGTTTGTAATATTATTGCTGGATTTGGTTA TTTATTCGCTTGATTGGGA
CDS sequence (LotjaGi6g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCGGTGCTTCGACGGATTGAAGCAGTGGTTTGCTGCTGCGTTAAGTTGTTTTCATGCTCGTGGTTTGCCCCCGCA ACCTGCAAGAGGTTTACGGAATCCGGAAGCACTTGCAAGAGAAACAATATTTAGTGTTAGTGAAATTGAAGCTCTCTATG AGCTCTACAAGAAGATTAGCAGTTCAATGATTGATGATGGACTCATCCATAAGGAAGAATTTCAGATGGCCTTATACAAG ACAGACAACAAAGACAGCATATTTGCAGATAGGGTGTTTGACTTGTTTGACGCAGAGCACCATGGGAAACTTAATTTCAG AGCGTTTGTGCGTGCTCTCTCTGTCTTTCATCCCAATGCACCAGTTACTGAAAAGACTGACTTTTTATTCAACTTGTATG ATCTTAAACATCAGGGATATATTGAGAAACATGAGTTAAAACAAATGGTGGTGGCCACTCTAGCTGAATCTGGGATGAAA CTTGCAGATGATGTGGTTGATGGCATCATTGACAAGACATTCAAAGAAGTTGATACTAAGCTTGATGGGAAGATTGACTT GGAAGAATGGAAAGAACTTGTCGTGACGCATCCATCTCTTCTGAAAAATATGACCCTTCCCTATCTTAAGGAAATCACAA CCACATTTCCTAGTTTTATCTTTCACTCACAGGTTGAAGATGATTAA
Protein sequence (LotjaGi6g1v0281000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRCFDGLKQWFAAALSCFHARGLPPQPARGLRNPEALARETIFSVSEIEALYELYKKISSSMIDDGLIHKEEFQMALYK TDNKDSIFADRVFDLFDAEHHGKLNFRAFVRALSVFHPNAPVTEKTDFLFNLYDLKHQGYIEKHELKQMVVATLAESGMK LADDVVDGIIDKTFKEVDTKLDGKIDLEEWKELVVTHPSLLKNMTLPYLKEITTTFPSFIFHSQVEDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 227 | 227 | 4.4E-111 | – | |
| PANTHER | 1 | 227 | 227 | 4.4E-111 | – | |
| Gene3D | 34 | 228 | 195 | 4.9E-62 | – | |
| SUPERFAMILY | 35 | 220 | 186 | 4.74E-43 | ||
| ProSiteProfiles | 84 | 119 | 36 | 8.46 | ||
| SMART | 88 | 116 | 29 | 3.3 | ||
| PRINTS | 92 | 113 | 22 | 3.3E-7 | – | |
| ProSiteProfiles | 121 | 156 | 36 | 10.05 | ||
| Pfam | 124 | 192 | 69 | 3.6E-9 | ||
| SMART | 125 | 153 | 29 | 4.4 | ||
| CDD | 125 | 194 | 70 | 1.01928E-7 | ||
| PRINTS | 139 | 157 | 19 | 3.3E-7 | – | |
| ProSiteProfiles | 165 | 200 | 36 | 10.803 | ||
| SMART | 169 | 197 | 29 | 1.4 | ||
| PRINTS | 185 | 205 | 21 | 3.3E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0281000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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