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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0281300 |
| Transcript ID | LotjaGi6g1v0281300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT5G47800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FIK1|Y5780_ARATH BTB/POZ domain-containing protein At5g47800; TrEMBL-Plants: tr|A0A0B2S7S8|A0A0B2S7S8_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi6g1v0281300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59772013..59774667) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCATGAAACTTGGAACAAGGCCGGATACTTTCTACACTGAACAAGCCACCAGGTAAATGGTAATCATAATTTC AGCAAAATATTTTTAATAGACAATTTTATGTTGGAAAAATTATTAGCATAACATTGTCTGATTTGATAACTTGATGGCAA GGATATAAGAAACTTGATCTAATCCTTATCATAATCATAAATGCAGGAGTATAGTTTCAGATTTACCTGCTGACCTTGTG ATAAGAATCAACGATACTACTTATCTTCTACACAAGGTACGTGAATTGGATTAAGTTGATTAGTGTAAAAGGAAAATAAA AATTTCTATCATAGATCATCTTTAATTATACTTCTGTTAGCTGCAGTCTCCGCTTCTTAAAAAATGTGGCCTTCTTCAAA GACTTTGCTCTGGTTCTAGTGATTCTGAGAGTGTTCCTCTTGAGCTTAATGATATGCCTGGAGGACCAGAAGCTTTTGAA CTCTGTGCTAAGTTCTGCTATGGAATTTCTATCAACATTAGTGCACATAACTTTGTACCCACACTCTGCGCTGCTAAGCT CCTCCAAATGAATGACTCCATTGAGAAGGGAAACTTGGTAGGGAAACTTGAGTCTTTCTTCACTTCATGTATTCTTGAAG GTTGGAAGGACTCTATTGCTACATTGCAGGCCACTGATAAGTTACCAGAGTGGTCTGAGAATCTTGGCATCATAAGAAAA TGCATTGATTCAATTATTGAGAAAGTTCTTACACCTCCACCACAGGTAAAAAACCTCAAAAATGTTAATGTTTGGATACA CGATGGAAAGCCGTGGTGGACAGAAGCAAGTTCCCTTAACTTTTTCGTCTGTCTACCATAATTTTGGCTAAACCATGGTT TTCCACCGTTTTTCCAGACATGCACTAAACTTCTTTCACATAAGATTGATACATAGGACTTTTTTTTTGCTTAACGGTGA TGATATGTGCAGGTCAAATGGTCCTACACCTACACTAGGCCTGGTTACAACAAAAAACAGCATCATTCTGTACCAAAGGA TTGGTGGACGGAGGATGTGTCTAATCTTGACATAGATCTTTTCAGGTGCATAATAATGGCTATAAGATCAACACATGTGC TCCCACCGCCACTTATTGGCGAAGCTTTGCATGTCTATGCCTGTAAGTGGTTACCTGGCATAACAAAGCCTAAAACTTCA GGCGGTTCAGCACCACAAATGGAAGAATCTAAGGAGAAAAACCGAAAAATTCTCGAAACAATTGTCAGCATGATTCCTGC AGATAGAGGGTCAGTTTCAGTTGGATTTTTGCTAAAACTTCTTAGCATTTCAAGTCATTTTGGTGTCTCACCAGTTACAA AAACAGAACTCATAAAGAGAGCTAGCATACAATTTGAGGAGGCAACAGTGAGTGACCTGCTTTATCCTTCAACATCTCCA TTGGACCAGAATTTCTATGATACGGAGTTAGTTCTAGCAGTGTTGGAAAGCTTTGTGAAGTTTTGGAAAAGAATCTCCCC TGGTGCTGTGGATAACAGGCACTTCTTGAGATCAATCAGAAAAGTTGGCAAGCTCATTGATTCCTATCTTCAAGTGGTTG CAAGGGATGAAAACATGCCAGTGCAGAAGTTTGTAGCTCTTGCTGAAACTGTACCAGCTATTGGCCGAATAGAGCATGAT GATTTGTACCGGGCAATTAACATCTATCTTAAGGTGAATAATCCATGTCATACATGCAGTGTCTTATATACAATATCCAA ACCATGTTATCAGTTTATTTTCTATTTTCGAACATTTGGCATACATTGTTTCCTTTCAACAAGTTGAAACTAGGTAACGT TTTGTGAAAACCAGGTAACCTTTGTAGTGAAAACAAAATTCTCAAACCTAAGAGGTCTAAACTTTGATGAATTATCATGA ACTGTTAATTGGATACTTGACTCATGAAACAGAAGACATTTCAACACTTTTTGAGGACCTTGCCATGCTAACTATATACA CTAGTACACAGTATTCCCACAAAACACTAAACTTAGCATTGAACTATATCAATTATAAGATATATTCATGGTGCATTCAT AATGTGACTTATGTTCAATGCAAAAACAGGTGCATCCTGATCTGAGCAAGGTAGACAAGAAGTGCTTGTGCCGGAGTCTA GAGTGCCAAAGACTGTCCCCAGAAGTGTGTGCTCATGCAGTTAAAAACGAGTCACTGCCGTTAAGAACTGTGGTGCAGCT CCTCTACAATGAACAAGAGAAAGACTCAAAGCCAACCAGTAATCCCAAGCTGCAAAAACCGCATGAGCTACTTCTAGGAG CGAAAAAGAGACCAGCTACTAGAGATAGCCATGGCAAGCGATCTTTAGGTCAAGACAAAGAAGGGCTCAAGAGAGAAGAA GTCACAAGTAGAACTTCCCATGGTGAGAGTAGAGAAAAGGGTCAGCATAAAACTAATAGATTAGATGGTAACTTGGCATT GGACTTGGAAAGAAAGATGGTTATAAGAGGAAACACTGAGGAGACAGGGTCAGAAAAGATAAGGGGAGCCAAAGAAGAAA GCATGTCAAGCAGCAAATTGGAGTTGGATACTAGGAAAATCATGACAAGGGCAAGAAGCAACAAATCAGAACATGGCCGT GAAAAGGGAAGATAG
CDS sequence (LotjaGi6g1v0281300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCATGAAACTTGGAACAAGGCCGGATACTTTCTACACTGAACAAGCCACCAGGAGTATAGTTTCAGATTTACC TGCTGACCTTGTGATAAGAATCAACGATACTACTTATCTTCTACACAAGTCTCCGCTTCTTAAAAAATGTGGCCTTCTTC AAAGACTTTGCTCTGGTTCTAGTGATTCTGAGAGTGTTCCTCTTGAGCTTAATGATATGCCTGGAGGACCAGAAGCTTTT GAACTCTGTGCTAAGTTCTGCTATGGAATTTCTATCAACATTAGTGCACATAACTTTGTACCCACACTCTGCGCTGCTAA GCTCCTCCAAATGAATGACTCCATTGAGAAGGGAAACTTGGTAGGGAAACTTGAGTCTTTCTTCACTTCATGTATTCTTG AAGGTTGGAAGGACTCTATTGCTACATTGCAGGCCACTGATAAGTTACCAGAGTGGTCTGAGAATCTTGGCATCATAAGA AAATGCATTGATTCAATTATTGAGAAAGTTCTTACACCTCCACCACAGGTCAAATGGTCCTACACCTACACTAGGCCTGG TTACAACAAAAAACAGCATCATTCTGTACCAAAGGATTGGTGGACGGAGGATGTGTCTAATCTTGACATAGATCTTTTCA GGTGCATAATAATGGCTATAAGATCAACACATGTGCTCCCACCGCCACTTATTGGCGAAGCTTTGCATGTCTATGCCTGT AAGTGGTTACCTGGCATAACAAAGCCTAAAACTTCAGGCGGTTCAGCACCACAAATGGAAGAATCTAAGGAGAAAAACCG AAAAATTCTCGAAACAATTGTCAGCATGATTCCTGCAGATAGAGGGTCAGTTTCAGTTGGATTTTTGCTAAAACTTCTTA GCATTTCAAGTCATTTTGGTGTCTCACCAGTTACAAAAACAGAACTCATAAAGAGAGCTAGCATACAATTTGAGGAGGCA ACAGTGAGTGACCTGCTTTATCCTTCAACATCTCCATTGGACCAGAATTTCTATGATACGGAGTTAGTTCTAGCAGTGTT GGAAAGCTTTGTGAAGTTTTGGAAAAGAATCTCCCCTGGTGCTGTGGATAACAGGCACTTCTTGAGATCAATCAGAAAAG TTGGCAAGCTCATTGATTCCTATCTTCAAGTGGTTGCAAGGGATGAAAACATGCCAGTGCAGAAGTTTGTAGCTCTTGCT GAAACTGTACCAGCTATTGGCCGAATAGAGCATGATGATTTGTACCGGGCAATTAACATCTATCTTAAGGTGCATCCTGA TCTGAGCAAGGTAGACAAGAAGTGCTTGTGCCGGAGTCTAGAGTGCCAAAGACTGTCCCCAGAAGTGTGTGCTCATGCAG TTAAAAACGAGTCACTGCCGTTAAGAACTGTGGTGCAGCTCCTCTACAATGAACAAGAGAAAGACTCAAAGCCAACCAGT AATCCCAAGCTGCAAAAACCGCATGAGCTACTTCTAGGAGCGAAAAAGAGACCAGCTACTAGAGATAGCCATGGCAAGCG ATCTTTAGGTCAAGACAAAGAAGGGCTCAAGAGAGAAGAAGTCACAAGTAGAACTTCCCATGGTGAGAGTAGAGAAAAGG GTCAGCATAAAACTAATAGATTAGATGGTAACTTGGCATTGGACTTGGAAAGAAAGATGGTTATAAGAGGAAACACTGAG GAGACAGGGTCAGAAAAGATAAGGGGAGCCAAAGAAGAAAGCATGTCAAGCAGCAAATTGGAGTTGGATACTAGGAAAAT CATGACAAGGGCAAGAAGCAACAAATCAGAACATGGCCGTGAAAAGGGAAGATAG
Protein sequence (LotjaGi6g1v0281300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGTRPDTFYTEQATRSIVSDLPADLVIRINDTTYLLHKSPLLKKCGLLQRLCSGSSDSESVPLELNDMPGGPEAF ELCAKFCYGISINISAHNFVPTLCAAKLLQMNDSIEKGNLVGKLESFFTSCILEGWKDSIATLQATDKLPEWSENLGIIR KCIDSIIEKVLTPPPQVKWSYTYTRPGYNKKQHHSVPKDWWTEDVSNLDIDLFRCIIMAIRSTHVLPPPLIGEALHVYAC KWLPGITKPKTSGGSAPQMEESKEKNRKILETIVSMIPADRGSVSVGFLLKLLSISSHFGVSPVTKTELIKRASIQFEEA TVSDLLYPSTSPLDQNFYDTELVLAVLESFVKFWKRISPGAVDNRHFLRSIRKVGKLIDSYLQVVARDENMPVQKFVALA ETVPAIGRIEHDDLYRAINIYLKVHPDLSKVDKKCLCRSLECQRLSPEVCAHAVKNESLPLRTVVQLLYNEQEKDSKPTS NPKLQKPHELLLGAKKRPATRDSHGKRSLGQDKEGLKREEVTSRTSHGESREKGQHKTNRLDGNLALDLERKMVIRGNTE ETGSEKIRGAKEESMSSSKLELDTRKIMTRARSNKSEHGREKGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 597 | 597 | 0.0 | ||
| PANTHER | 1 | 597 | 597 | 0.0 | – | |
| Gene3D | 7 | 140 | 134 | 2.9E-8 | – | |
| SUPERFAMILY | 14 | 114 | 101 | 3.92E-14 | ||
| CDD | 20 | 123 | 104 | 6.98338E-43 | – | |
| ProSiteProfiles | 28 | 96 | 69 | 8.669 | ||
| ProSiteProfiles | 199 | 474 | 276 | 81.706 | ||
| Pfam | 199 | 450 | 252 | 2.1E-81 | ||
| MobiDBLite | 472 | 604 | 133 | - | – | |
| MobiDBLite | 489 | 604 | 116 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0281300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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