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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0281400 |
| Transcript ID | LotjaGi6g1v0281400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear inhibitor of protein phosphatase 1; TAIR: AT5G47790.1 SMAD/FHA domain-containing protein; Swiss-Prot: sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1; TrEMBL-Plants: tr|G7IQ42|G7IQ42_MEDTR Nuclear inhibitor of protein phosphatase; Found in the gene: LotjaGi6g1v0281400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59781862..59783808) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGGGAGAGCATCAGGTCTTGATAGGTTTAAGAAAGCGCAAACTTTGGAACCTTTCTCTGTCGCTGTCAATTCGTC TTCGAGAAATGTTGCCCAACCCTCTAGCAAAAAAGTAGAAGGGCATTCCTCTGCTTGGCCGCCCGCTCAGTCGCAAACTT CTGTTCACCAATCACAACATGAGCAGCAACAGCATGCTTCTCAGAAAGCCGTGGGGGTGGAGGCGGCTCCGTTGTTGGGG CAGAGTCAGCATGTGACTCAGGTAGGAGGAGGGCAATCGACGTGGCAGCCGCCGGATTGGGCGATTGAGCCGCGGCCGGG TGTTTTTTACCTCGAGGTTTTGAAGGATGGACAGGTGCTTGATCGGATTAATCTGGACAGACGGAAGACTATCTTTGGGA GGCAAGTCCAGACTTGTGATTTTGTGCTTGATCATCAATCTGTCTCTCGCCAGCATGCTGCAGTCGTTCCTCACAAAAAT GGGAGGTTAGAACGTTTTTTCTCTTGTTTTCAGTGTTAGTAGAGTAGACTCAAACATCCAATGACTCACTATATAGATGC CTTTTCTTTCTGAATTACTTATCTGAAGAATTTGTCTCAGTGTTAGTAGAGTATTCAAGGATGTTAATTTCTGTTAATCA GCCATTCATAAAACACTGCTAAGTAGCACGAAATATCTTGCTCGAACAACAAATAATCATTGACCAATCACATTTTAGCA ATCATGCAAGGGGATAGGCAAAAGATAACTGTATATCATCAGATAATGACCGTATGGATGATAATGCATTTCAGGCAAAA AAAAATAATTCTAGCCATACAACAATTTTTAAACGAATATAGACAACTAAGGAAACACTTCAGTGCTTTTACATATTAAA CTAGAAGTTTCTCATAAAATTTGGGTATTGATGATTCATTGAGCACAAGAGGGGACTTTGAAGGGAAAATAACGCATTAT CTTTAGTGATTGAATGGCAGACACTTGCTATGTCCTGGAGTACACAGATGAATGTTTATTATTCTTTTTTTTGGCTGTTA TAAAGCCCTTTCTCATACGAAACTTGAAAATCCCTTGGAAATTGCAATTTTATTGGCATTAATGAAACTATTTTTCTATT ACAGCATATATGTAATTGATTTGGGATCTGCTCATGGTACATTTGTTGCAAATGAGCGATTGACTAAGGATTCACCAGTT GAGTTTGAAGTGGGGCAATCGTTGCGGTTTGCTGCATCAACAAGAGTATATGTATTAAGAAAGAATGATGCAGCTCTTTT CCCTCGGCCTCCAGCACTCACGGAGATTAATTTCCCACCACCTCCTGACCCGTCTGATGAAGAAGCTGTTGTTGCATATA ATACGCTTCTGAACCGTTATGGCATCAACAAGTCTGATCTAGTGTCCAAATCTAATGAGTCTGGTAGTTCAGCAAGTGTC AAAAATAAGGATTACCAATCAGAAAGACCGGCTAAAAGAAGGAAGACTGTTGCCTTCAGGGATCAAGTCGGGGGAGAGTT AATCCAGGTTGTTGGAATTTCAGATGGCGCAGATGTAGAAACAGAACCTGGTCCAGTTGGTGTTAAAGAAGGAAGTCTTG TCGGTAAATATGAATCTCTTGTACAGATTACTGTAATACCAAAGGGGAAAGAGCAGTCCTCTGTTAAGGAGGAGGCAGAT TCATCCCAAAAAGGTGTGACTGATAAACTACAAGAAGTCATGAAAAAGATCAAAACCCCTGTTAAAACTGGGATTTATGA TGACCTTTATGGAGAATCATTTTCTGTCAAAGTTGGATCTTCCTGGGCATATTCAACTTCCAGTACCGGTGAACGAGCTT CTTCAGATAAGGAGGATGAAAAAGGGAATACGTTAAGTGGGAAATCAGACAGTAAGCCAAGCAATGCTGATGGAGATGAA GAGGATGATGATGATTTGTTTGGGTGA
CDS sequence (LotjaGi6g1v0281400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGGGAGAGCATCAGGTCTTGATAGGTTTAAGAAAGCGCAAACTTTGGAACCTTTCTCTGTCGCTGTCAATTCGTC TTCGAGAAATGTTGCCCAACCCTCTAGCAAAAAAGTAGAAGGGCATTCCTCTGCTTGGCCGCCCGCTCAGTCGCAAACTT CTGTTCACCAATCACAACATGAGCAGCAACAGCATGCTTCTCAGAAAGCCGTGGGGGTGGAGGCGGCTCCGTTGTTGGGG CAGAGTCAGCATGTGACTCAGGTAGGAGGAGGGCAATCGACGTGGCAGCCGCCGGATTGGGCGATTGAGCCGCGGCCGGG TGTTTTTTACCTCGAGGTTTTGAAGGATGGACAGGTGCTTGATCGGATTAATCTGGACAGACGGAAGACTATCTTTGGGA GGCAAGTCCAGACTTGTGATTTTGTGCTTGATCATCAATCTGTCTCTCGCCAGCATGCTGCAGTCGTTCCTCACAAAAAT GGGAGCATATATGTAATTGATTTGGGATCTGCTCATGGTACATTTGTTGCAAATGAGCGATTGACTAAGGATTCACCAGT TGAGTTTGAAGTGGGGCAATCGTTGCGGTTTGCTGCATCAACAAGAGTATATGTATTAAGAAAGAATGATGCAGCTCTTT TCCCTCGGCCTCCAGCACTCACGGAGATTAATTTCCCACCACCTCCTGACCCGTCTGATGAAGAAGCTGTTGTTGCATAT AATACGCTTCTGAACCGTTATGGCATCAACAAGTCTGATCTAGTGTCCAAATCTAATGAGTCTGGTAGTTCAGCAAGTGT CAAAAATAAGGATTACCAATCAGAAAGACCGGCTAAAAGAAGGAAGACTGTTGCCTTCAGGGATCAAGTCGGGGGAGAGT TAATCCAGGTTGTTGGAATTTCAGATGGCGCAGATGTAGAAACAGAACCTGGTCCAGTTGGTGTTAAAGAAGGAAGTCTT GTCGGTAAATATGAATCTCTTGTACAGATTACTGTAATACCAAAGGGGAAAGAGCAGTCCTCTGTTAAGGAGGAGGCAGA TTCATCCCAAAAAGGTGTGACTGATAAACTACAAGAAGTCATGAAAAAGATCAAAACCCCTGTTAAAACTGGGATTTATG ATGACCTTTATGGAGAATCATTTTCTGTCAAAGTTGGATCTTCCTGGGCATATTCAACTTCCAGTACCGGTGAACGAGCT TCTTCAGATAAGGAGGATGAAAAAGGGAATACGTTAAGTGGGAAATCAGACAGTAAGCCAAGCAATGCTGATGGAGATGA AGAGGATGATGATGATTTGTTTGGGTGA
Protein sequence (LotjaGi6g1v0281400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGRASGLDRFKKAQTLEPFSVAVNSSSRNVAQPSSKKVEGHSSAWPPAQSQTSVHQSQHEQQQHASQKAVGVEAAPLLG QSQHVTQVGGGQSTWQPPDWAIEPRPGVFYLEVLKDGQVLDRINLDRRKTIFGRQVQTCDFVLDHQSVSRQHAAVVPHKN GSIYVIDLGSAHGTFVANERLTKDSPVEFEVGQSLRFAASTRVYVLRKNDAALFPRPPALTEINFPPPPDPSDEEAVVAY NTLLNRYGINKSDLVSKSNESGSSASVKNKDYQSERPAKRRKTVAFRDQVGGELIQVVGISDGADVETEPGPVGVKEGSL VGKYESLVQITVIPKGKEQSSVKEEADSSQKGVTDKLQEVMKKIKTPVKTGIYDDLYGESFSVKVGSSWAYSTSSTGERA SSDKEDEKGNTLSGKSDSKPSNADGDEEDDDDLFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 72 | 47 | - | – | |
| MobiDBLite | 26 | 69 | 44 | - | – | |
| Gene3D | 80 | 211 | 132 | 1.2E-34 | – | |
| PANTHER | 83 | 427 | 345 | 9.8E-68 | – | |
| PANTHER | 83 | 427 | 345 | 9.8E-68 | – | |
| SUPERFAMILY | 84 | 207 | 124 | 9.56E-26 | ||
| CDD | 108 | 197 | 90 | 1.19623E-22 | ||
| SMART | 129 | 181 | 53 | 5.9E-14 | ||
| ProSiteProfiles | 130 | 181 | 52 | 13.844 | ||
| Pfam | 131 | 197 | 67 | 3.2E-17 | ||
| MobiDBLite | 254 | 282 | 29 | - | – | |
| MobiDBLite | 254 | 271 | 18 | - | – | |
| MobiDBLite | 335 | 354 | 20 | - | – | |
| MobiDBLite | 338 | 354 | 17 | - | – | |
| MobiDBLite | 388 | 435 | 48 | - | – | |
| MobiDBLite | 399 | 413 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0281400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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