Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0286400 |
Transcript ID | LotjaGi6g1v0286400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tonoplast dicarboxylate transporter; TAIR: AT5G47560.1 tonoplast dicarboxylate transporter; Swiss-Prot: sp|Q8LG88|TDT_ARATH Tonoplast dicarboxylate transporter; TrEMBL-Plants: tr|G7IM40|G7IM40_MEDTR Tonoplast dicarboxylate transporter; Found in the gene: LotjaGi6g1v0286400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60369389..60376645) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCTAACTAGTTGCTAACTAGTAGCATTAAAAGACAACCCCAAATAAAAAACCATATCAATTAGCATTTGTATGATGG AACCAAGTTTTGGGCCTACGCCACGTGAAAAACGCTCCGTCCTTGTTATATATCTTCCAAAATTCCTTCTTTCCCTTTCC TACAGTTTTTAGTTTTACATTTTTTCCAAGATGGCCGGAGAAAAAACTTCGTCAGCCGCTCCCGATGACAACCTGAAGGC GCCACTCCTCCCCCTCCGGGAACCAATCCAACAAACACCCTGCACCTTCAAATCCAATATGCTAACACTCAAAAATTTCT GCATCATTCTAGGCCCCTTGTTGTCCCTCATCATCTGCTTCTTAGTGAAGCTCGAGAATGCTCCGGCGACCAGCAAGAAA ATGCTCGGCGTGATTGCTTGGGTTTTCACTTGGTGGATCACTGAGGCCGTTCCTCTTCCGGTCACCTCCATGTGTCCCCT GTTTCTGTTTCCCCTGTTTGGAATTTGCTCAGCTGATAAGGTAGCTCACTCTTACATGGATGATGTCATTACCTTGGTTT TGGGTAGTTTCATTCTCGCCCTCGCCGTTGAACGCTACAACGTTCACAGAAGATTGGCCTTGAATGTGAGTGATTTCGGT CCCAATTGATTAAAAAAAATTTATAAATTATTATCGCAATTCCGACATAGCTCTGTGTTAGGATTGAACTCTCGACTTTA GGTTCTAACAGACAAACACTTTTTACTACTGCGATCGACATGTGTTGACTTCTGTGTTACGGTTCTCACACTATTCTGTT GATCTTGTTAGCACAGGTAACCTTGCTATTTTGTGGCGATCCCCTGAATCCAGCGATGTTACTACTGGGGCTGTGCGCGA CGGCGTTCTTCGTGAGCATGTGGCTACACAACGTGGCAGCGGCAGTGATGATGATGCCGGTGGCAACAGGGATCCTACAT CGACTACCACCGGCGGAGGAGCAATCGGAAGTTGTAAACAAGTTCAGCAGGGCGGTGATTCTGACAGTGGTATACGCGAC GCCGATAGGGGGAATAAGCACTCTAACAGGGACAGGTGTGAACCTGATACTGATCGGGATGTGGAAGAGCTTGGTTCCGG AGGGGAAGCCGATAAGCTTCAATACGTGGTTCTTCTTTGGGTTTCCGGCGGCGGTTCTGCTTCTGATATGCTTCTGGTTC ATACTCTGTTTGCTGTATGTACGAAAAGGGTCGCGTGTGGCTTTGTCTGATTACATGGATAAAGCGCATTTGAAAGCGGA CCTCGAAGCTCTTGGTAAGTTTCTCACCTCAAGTACTCTATTCATTTCCATCTTTTGACAATAGTTATTAGAAAAAAAAC AGAGGAGGAGGGAAAGTTACACGAGGAAGATGAGTCAGGTAGTGACTAGTTTCCTTTCTATGTCGTTTTGTTTCTTTTGA ATTATTTGATTTATTTCTATCCTTCTCGTCTGCATTGATTGATAAGTAGTCCTCCCTCCGTCCTTAATTATAAGCTAAAG TTGTGAAAATCACACTTATTAAGAAAGGTTTAATTGATGCATTGGTTTTTGAAAAAAAATTTACAACTTTTCATGTTTAC CATAAAACTTTTTAATTATTATACTATGAATAGTGCTCCACTACCAATAAATGCAAAGATAAATATGGAAAGAAATATTA GCTTTTACAACTTTAGCTTATATTTAGTGACAAAATATAAGTCTCAACTTTATATTATAATTAGGGACGGAGGGAATAGT TAGATAAGATTCCATAGTTCTAGGGCCAACCTAAATGGACACATGTCATGTCTTTGCGGAGATGTCTCTAGCTAAAGTTT GAATTAAATCACACTAGATTTAGATAAACTTATAATTTTTAAGATAAGTGCATATGAAATTTAATATTTTATCACTTGTG TTAAATATAATTAGTATACGTATGGGCTATTTTTTGATGCTTAACAACAAATAAGCAAAACTGAAAACAGGAAAGCAAAA AAACCCCCACAGCCTAACAAAAGTTGTCCCCAGAGAGTCAGCCAATAACAACGGCTCCAGGTCAGGAGGGGGATCCTGAA CAAGGAGGAAATTTAAGTCTTGATTAGCTCTCATCTTAGCTAAGAAATCTGCGCATGCATTACCCTCACGCAAAGTGTGC ACCAGTCGCACCTCCCACAGGCGACGAAGCAGATCAACAGTGTTGTAAATCAACACTGCTAGCTCATGGAAATGAGTGGG GGGCTCCTAGACAAGAGTAACGACAAGCAATGAATCAGAATAACACACCACCTTGCGGAAACCTCGGTTCCACGCAATCA CCAAGCCATGGAAAATAGCAAAGAGCTCCATATGCAAAACTGTGGCCTGACCTCCATAGCCTACAAACCCTGTGATCCAG GGTCCAAGCGCATCACGAAGGCACCCACCAAAGCCGGAACGCTGCAGAGACCCGAGAGAACTCCCATCGCAGTTGATAGC AATTTCAGAACCTGTCGGAGCAATCCAAGAGACCAATCGAGGGGTAGAAGCTCGAGCCGGCTTCTCCCAAGCGTGTTGAA ACAGCACCTTCTGGTCCAGCACCGAGCGCACCAGCACATCATCTGGTATGGAAGTTTGCACATACCCTTGTAAAAAACAG AAGAAAAAAAATCTATTAGACAGAAAAATTAAGTTTACAAGAACTAAATTTTTCACATAAACCACATTCCATTAAATTAA GTAGATGCAATATCTATGGATAGGATCCCCTCAATATCGGGAGGAACATCCTCCATCCAAACAAAACACTGACCAAATAA AGTAAGCCATAAATTTTGTGGCCTTATTATCGTCGTGGCGAACATGACGCAAACAAAAGGAATTAGAACTAGAGAATATA CCTACACAATCAGACACAACTGAAGTTAAATACGACAATTGGAAGAAAAAGAAGACTAGGCACTAACAACCGTTAAATTA TCCATCTTAAATATCACATTCTTGAAGCCCATCTTGATTGTAAGACGAATTGCTAACCACACATCAAGTCCTTCAGCCAC GACCACACTTAGAGAATGAAACTCACTAGCTGCAGCAGATGCAAGGACCACACCGTGAGAGTCCCTCGCCACCATACCCA AAACACACGTTCCAGAGGAAGAAACAACTACATCCGTGTTAATTTTGACGACCCTCGCGGGTGGAGAGCACCAACCAATC ATGCACGAGTTGTCCCCATCCCATCGACCATCCACATCACTCATACCACCATCCGTAATCACTAATCAACATCACCCTCA CCGAGGAAGCTAGCCTCCAAGTTTGTTCTGGGTAGAGCTTCACTTGCTCGAACACCCATTTATTCCGGCGAGACCAAATA GCCTATAGCATCGTAATAACAGGTGGGAGATTTTTTATTCAATAATTAAGATTAAAAACTTTGCTACGATGTTGAAGATT TTTTTTTTTATTTTTATGAAATACAAATAGAATTATGTAGATGGTTTTTTTTTGTCTTAGACGGCAGATGCAATGACACT TCAACAAGTTTGGATAGAGTTTTAGAAAGCAAAAAAAATTATGGAATTTTATTTTCTAGTAAATACTACATAATTTTGAT TTTTGAAAATGAAATTCTGGTTGTCGCACATGACAGATGTTCTACGCGATGCTGGGACAACCAGTTCGACAATTCACAAC AGTAAACAACAAAAGCATAAAAGAAACAAAAACACAACACAAAAGTTGTTAACCCAGTTTGGTGAAACTTCTCCTACATC TGGAGGGCTTCGCCCAAAGAAAGGAAATTCACTATCTCAAGATTTAGGAACTACAGACACTCATGAACACCTCAGCTCAT AGTTCTTTTCCTAATCTACCCAGTGTTTTTCTACTTAGTATATCGACCTAAGTATGAGAGTCTCTCTCACTTTCTCTCAA TCACTGCCACAGTGATTGAACTTTCAATAAGCAACACAGGTTTGAAGAGATTACAACTCAACTAAAACAAACCAACTCTA TGTCATATGATGATCAATGGAGGCAGTAGAGTGGTGTACAAAATAACAGAATAAGGACTCACAAAACACAACCCTAAAAA CCCAATCCTTGGGTGCCCAACGCACACTTAGCAACTAGGGTTAACACTCCTTAAATAGTCGTTCTTCAGCAGGCATTGAT CTTCAATGGACTTTCACAAAAATAGAGTCCATAAACAGATCTGGAACAAATCTTTTTAAACCAGTAACAAATCTTATCAA ATAAGATTTGAACAAAAGATAACAACTTTCACAATTTAAACCAAATCAAATCATCTCCAACAGATTTGATTCCACTATAA TATATTCCAGATAGCACACAGAAGCTTCTTCAACAACCCTATATCTTGAATACCACGTAATCAAAGCACAGTTTCACAAA ACAAACATGCAACACACAGCAGCCCCGCAGGGACAAATGTCACAGGCATGATGTTACAACATCTGCTTCGACATCAGGTT GTTTTTTACAAAAAAACAGGCAACCAAAAGTAACAACAAAAAATAAAATAGTAAAACATTAGAACAATTAATGCCACACT TTTTTTTTTCATAAATTTATAAATTTAATTCTAAATTAAAATTTTTATGGTCCTTGCGATGAGTTTTGATTCTCGGGCCC TCATGCAAAATTCTAGCCATTCGTTTTTGCAAGGAATGGTTATGGAGTATGGAGAGCATAGAAGTTCCTTTCTTCATATT CACAATTTTTTAATTTTTATGTTTTTATCTAATTCGAGCATGATTGCTTTGTAATGGATTTGTGAAAAGTCTGACAATAA TGTGGTTTCATGAGATTTAAAAATGAGTATTCAAATTATAGTTGAAGATTTAATCCCTAAATTTTTATGTGTTGTACCTT GTTGTTTGCTTATATATATCTTTTATAATCCATTTTTTCCATTGAAGTTTAATAAGTTCTTCCTTTTGAAAGAGATTTAT ATTTTTGTTCAAAGATTCGCATTCCATTGGTAAACGATGGGCTGAAGCCCAACCACATACAGGTAGATTGATATCCCATA GTGAAATGGCTGATCCAATGAATTGGCTTCCCAAGCCCATTTGAACCAATCTCACATTGACAAAAAGGTATCCTTATATA AGTACTAAACAACGTAATCTTGATGGAAGATATGTGTAAGTATCTAGTTCAGGTTCGACCATAAATATATGTAAACAAAT CTTCATACGAACTTAGCTTTTAGAGTCCTTATTTTAGATATTGCTCGCACATGATTACTATACTTCATACTCTAGATATC AAGTCAAGTGCCTAAGTGAGGGAGTAGAAACATAAATAAGTCTTTATATTACTAAATAGGAAACAATTCTCTGCTAGCTT TTGGGGTTGGGTTAGTGTGCGCCTATCTCAAACTCAAGAGATACATGGTTAACATTTTTTTAGTTTTATTTTAAGATTAG AGTTTAAATTAACAAAAATTATTTTTACACATATATTCTCCTAAATAAGCTGATGCAGTTGCAATCCTATTATGGCTGTT GTAGGTCCAATGGCTTTTGCTGAGAAGATGGTGCTGTCTGTGTTCGGGGTATGCTCTGTCTAAAATCAATCCAATTTCAA TTTTTCATTTCTCAATCATGAATGAACATAATTCAATTTTTAACAATGGAATGCTAAATATAGTTGCTGATCATATTATG GATGACAAGAAGAATCTCAGATGACCTTCCTGGATGGGGAGCTTTATTCCATGGCCTTGTTGGTGATGGAAGTATCAGTG TATGTGATTGTGCTGTGTCTAGCTACTTTTGATGTTTTTCTTGTTGATTATTACTCATTGCACCTTGCATTGAAGTATCC AATCAATTAGAATGAAGACATGGTACCATGTATTGTAGGTTTTAGCAGCTGTCTTATTGTTCATAATCCCTAACATGAAG CAAAAGGGGGAGAAGCTAATGGACTGGAATGAATGCAAAAGGTTACCTTGGAACCTCATATTGCTTCTAGGAGCTGGATT TGCCTTAGCAGATGGAGTTCAATCTAGTGGCCTAGCAGATGTACTTTCAAGAGCCTTAGATTTCTTGCAAAATGTTCCAT ATTTGGCAATTGTTCCTGTTGTTACTCTTCTATGTAGCATTATTACTGAGTTCATCACATCCAATGATGCAACTGCAACC CTTCTTGTTCCACTTCTGTATCACATAGCCAAGACATTGCATGTGCATCCCCTGCTTCTTATGATCCCTGGAGGAATATC AACTGAGTTTGCATTCTGGCTTCCAACTTCAACACCATCAAATGTTGTTGGGTTTGCCACTGGACACATAGAAATTAAAG ACATGCTTAAAGTTGGTGTGCCACTTAAGCTTGCTGGGATTGCTGTGCTATCTCTTCTCATGCCATCACTGGGTGAGTTA CTGTGTTCACATTTAAGTTTGAGAAGATCAATTTGATTGAAAAATGATTCTGACTTGTAAGGTTTGTTGTTGCAGGAGCA ATTGTTTTTGGAACAAATGATGGCACTCAATAGGTGATAGATCATAGATGCAAACTCTTGATGGTTAGGTCCGTTAGGAT ATTGAATTATTAAATCCAAATTTCACTGTTTTGGATGGGTCTACATATGTATAGAGTATTGAGAAATATCACTAAAGTTT ATATTTTAAACAAAGAAAAAGCAAATGAAACAAAAAAAGGAGAAAAGATTCTAAGAAAACTAGAAAAGCTCCCGTAGGAT AACTCAAGTGGTCGGAGTTGAGGGACGTATGGGTTGGGTAGAGGGAGGACCAGGGATCGTTTCTGGCGGGTGTAATTTAT CTTTCTAATGTATAAAAAAAAACTAGAAAAGACAAAAGTTTTTTAATAGAGAAGGGATTGGATTATTAAATGATTGATAC ATGATCTTTGTAAGGCCTATTTATGATTCATTCAGTTATCTTATCTTGATTATAATTGTGATTACAGTTGTAAGACCCAT TTATCGGGAGAGAACTATTCACTTAACCTGATCTTCGAGCATCGAAGAATTAATCTCATGGCTATCGGCTATAAGATTGC TAATTAAGTGTACCTTCGAAATGGGAACCGTGTTAGGGTCAAACTTCTCACACCAATTAGATAATCACAGACACAAACAT CACCTAGAATAAAGAAGTGGGTGAATCAATAGCAACAAAGTTTGAAACTTGATGGAAAAATTGAAATGGATAGAGCAAAA GCAAGTGGAAAAATATGAGTTATGTGTGTCTCACAACAGACTGGAAAATCAGGGTGC
CDS sequence (LotjaGi6g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGAGAAAAAACTTCGTCAGCCGCTCCCGATGACAACCTGAAGGCGCCACTCCTCCCCCTCCGGGAACCAATCCA ACAAACACCCTGCACCTTCAAATCCAATATGCTAACACTCAAAAATTTCTGCATCATTCTAGGCCCCTTGTTGTCCCTCA TCATCTGCTTCTTAGTGAAGCTCGAGAATGCTCCGGCGACCAGCAAGAAAATGCTCGGCGTGATTGCTTGGGTTTTCACT TGGTGGATCACTGAGGCCGTTCCTCTTCCGGTCACCTCCATGTGTCCCCTGTTTCTGTTTCCCCTGTTTGGAATTTGCTC AGCTGATAAGGTAGCTCACTCTTACATGGATGATGTCATTACCTTGGTTTTGGGTAGTTTCATTCTCGCCCTCGCCGTTG AACGCTACAACGTTCACAGAAGATTGGCCTTGAATGTAACCTTGCTATTTTGTGGCGATCCCCTGAATCCAGCGATGTTA CTACTGGGGCTGTGCGCGACGGCGTTCTTCGTGAGCATGTGGCTACACAACGTGGCAGCGGCAGTGATGATGATGCCGGT GGCAACAGGGATCCTACATCGACTACCACCGGCGGAGGAGCAATCGGAAGTTGTAAACAAGTTCAGCAGGGCGGTGATTC TGACAGTGGTATACGCGACGCCGATAGGGGGAATAAGCACTCTAACAGGGACAGGTGTGAACCTGATACTGATCGGGATG TGGAAGAGCTTGGTTCCGGAGGGGAAGCCGATAAGCTTCAATACGTGGTTCTTCTTTGGGTTTCCGGCGGCGGTTCTGCT TCTGATATGCTTCTGGTTCATACTCTGTTTGCTGTATGTACGAAAAGGGTCGCGTGTGGCTTTGTCTGATTACATGGATA AAGCGCATTTGAAAGCGGACCTCGAAGCTCTTGGTCCAATGGCTTTTGCTGAGAAGATGGTGCTGTCTGTGTTCGGGTTG CTGATCATATTATGGATGACAAGAAGAATCTCAGATGACCTTCCTGGATGGGGAGCTTTATTCCATGGCCTTGTTGGTGA TGGAAGTATCAGTGTTTTAGCAGCTGTCTTATTGTTCATAATCCCTAACATGAAGCAAAAGGGGGAGAAGCTAATGGACT GGAATGAATGCAAAAGGTTACCTTGGAACCTCATATTGCTTCTAGGAGCTGGATTTGCCTTAGCAGATGGAGTTCAATCT AGTGGCCTAGCAGATGTACTTTCAAGAGCCTTAGATTTCTTGCAAAATGTTCCATATTTGGCAATTGTTCCTGTTGTTAC TCTTCTATGTAGCATTATTACTGAGTTCATCACATCCAATGATGCAACTGCAACCCTTCTTGTTCCACTTCTGTATCACA TAGCCAAGACATTGCATGTGCATCCCCTGCTTCTTATGATCCCTGGAGGAATATCAACTGAGTTTGCATTCTGGCTTCCA ACTTCAACACCATCAAATGTTGTTGGGTTTGCCACTGGACACATAGAAATTAAAGACATGCTTAAAGTTGGTGTGCCACT TAAGCTTGCTGGGATTGCTGTGCTATCTCTTCTCATGCCATCACTGGGAGCAATTGTTTTTGGAACAAATGATGGCACTC AATAG
Protein sequence (LotjaGi6g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGEKTSSAAPDDNLKAPLLPLREPIQQTPCTFKSNMLTLKNFCIILGPLLSLIICFLVKLENAPATSKKMLGVIAWVFT WWITEAVPLPVTSMCPLFLFPLFGICSADKVAHSYMDDVITLVLGSFILALAVERYNVHRRLALNVTLLFCGDPLNPAML LLGLCATAFFVSMWLHNVAAAVMMMPVATGILHRLPPAEEQSEVVNKFSRAVILTVVYATPIGGISTLTGTGVNLILIGM WKSLVPEGKPISFNTWFFFGFPAAVLLLICFWFILCLLYVRKGSRVALSDYMDKAHLKADLEALGPMAFAEKMVLSVFGL LIILWMTRRISDDLPGWGALFHGLVGDGSISVLAAVLLFIIPNMKQKGEKLMDWNECKRLPWNLILLLGAGFALADGVQS SGLADVLSRALDFLQNVPYLAIVPVVTLLCSIITEFITSNDATATLLVPLLYHIAKTLHVHPLLLMIPGGISTEFAFWLP TSTPSNVVGFATGHIEIKDMLKVGVPLKLAGIAVLSLLMPSLGAIVFGTNDGTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 42 | 42 | - | – | |
PANTHER | 10 | 531 | 522 | 3.8E-207 | – | |
PANTHER | 10 | 531 | 522 | 3.8E-207 | – | |
TMHMM | 37 | 59 | 23 | - | – | |
Phobius | 43 | 61 | 19 | - | – | |
Pfam | 52 | 526 | 475 | 8.6E-70 | ||
Phobius | 62 | 80 | 19 | - | – | |
TIGRFAM | 65 | 517 | 453 | 1.1E-65 | ||
CDD | 72 | 523 | 452 | 1.73376E-61 | – | |
TMHMM | 74 | 106 | 33 | - | – | |
Phobius | 81 | 107 | 27 | - | – | |
Phobius | 108 | 118 | 11 | - | – | |
TMHMM | 119 | 138 | 20 | - | – | |
Phobius | 119 | 138 | 20 | - | – | |
Phobius | 139 | 157 | 19 | - | – | |
Phobius | 158 | 175 | 18 | - | – | |
TMHMM | 158 | 180 | 23 | - | – | |
Phobius | 176 | 210 | 35 | - | – | |
Phobius | 211 | 236 | 26 | - | – | |
TMHMM | 216 | 238 | 23 | - | – | |
Phobius | 237 | 255 | 19 | - | – | |
Phobius | 256 | 280 | 25 | - | – | |
TMHMM | 258 | 280 | 23 | - | – | |
Phobius | 281 | 300 | 20 | - | – | |
TMHMM | 301 | 323 | 23 | - | – | |
Phobius | 301 | 327 | 27 | - | – | |
Phobius | 328 | 338 | 11 | - | – | |
TMHMM | 338 | 360 | 23 | - | – | |
Phobius | 339 | 361 | 23 | - | – | |
Phobius | 362 | 381 | 20 | - | – | |
TMHMM | 380 | 402 | 23 | - | – | |
Phobius | 382 | 399 | 18 | - | – | |
Phobius | 400 | 418 | 19 | - | – | |
TMHMM | 417 | 439 | 23 | - | – | |
Phobius | 419 | 437 | 19 | - | – | |
Phobius | 438 | 457 | 20 | - | – | |
Phobius | 458 | 479 | 22 | - | – | |
TMHMM | 460 | 482 | 23 | - | – | |
Phobius | 480 | 508 | 29 | - | – | |
Phobius | 509 | 528 | 20 | - | – | |
TMHMM | 509 | 528 | 20 | - | – | |
Phobius | 529 | 534 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0286400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…