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LotjaGi6g1v0286400.1

Overview

Field Value
Gene ID LotjaGi6g1v0286400
Transcript ID LotjaGi6g1v0286400.1
Lotus japonicus genome version Gifu v1.2
Description Tonoplast dicarboxylate transporter; TAIR: AT5G47560.1 tonoplast dicarboxylate transporter; Swiss-Prot: sp|Q8LG88|TDT_ARATH Tonoplast dicarboxylate transporter; TrEMBL-Plants: tr|G7IM40|G7IM40_MEDTR Tonoplast dicarboxylate transporter; Found in the gene: LotjaGi6g1v0286400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:60369389..60376645) extracted from Lotus japonicus Gifu genome v1.2.

ATTGCTAACTAGTTGCTAACTAGTAGCATTAAAAGACAACCCCAAATAAAAAACCATATCAATTAGCATTTGTATGATGG AACCAAGTTTTGGGCCTACGCCACGTGAAAAACGCTCCGTCCTTGTTATATATCTTCCAAAATTCCTTCTTTCCCTTTCC TACAGTTTTTAGTTTTACATTTTTTCCAAGATGGCCGGAGAAAAAACTTCGTCAGCCGCTCCCGATGACAACCTGAAGGC GCCACTCCTCCCCCTCCGGGAACCAATCCAACAAACACCCTGCACCTTCAAATCCAATATGCTAACACTCAAAAATTTCT GCATCATTCTAGGCCCCTTGTTGTCCCTCATCATCTGCTTCTTAGTGAAGCTCGAGAATGCTCCGGCGACCAGCAAGAAA ATGCTCGGCGTGATTGCTTGGGTTTTCACTTGGTGGATCACTGAGGCCGTTCCTCTTCCGGTCACCTCCATGTGTCCCCT GTTTCTGTTTCCCCTGTTTGGAATTTGCTCAGCTGATAAGGTAGCTCACTCTTACATGGATGATGTCATTACCTTGGTTT TGGGTAGTTTCATTCTCGCCCTCGCCGTTGAACGCTACAACGTTCACAGAAGATTGGCCTTGAATGTGAGTGATTTCGGT CCCAATTGATTAAAAAAAATTTATAAATTATTATCGCAATTCCGACATAGCTCTGTGTTAGGATTGAACTCTCGACTTTA GGTTCTAACAGACAAACACTTTTTACTACTGCGATCGACATGTGTTGACTTCTGTGTTACGGTTCTCACACTATTCTGTT GATCTTGTTAGCACAGGTAACCTTGCTATTTTGTGGCGATCCCCTGAATCCAGCGATGTTACTACTGGGGCTGTGCGCGA CGGCGTTCTTCGTGAGCATGTGGCTACACAACGTGGCAGCGGCAGTGATGATGATGCCGGTGGCAACAGGGATCCTACAT CGACTACCACCGGCGGAGGAGCAATCGGAAGTTGTAAACAAGTTCAGCAGGGCGGTGATTCTGACAGTGGTATACGCGAC GCCGATAGGGGGAATAAGCACTCTAACAGGGACAGGTGTGAACCTGATACTGATCGGGATGTGGAAGAGCTTGGTTCCGG AGGGGAAGCCGATAAGCTTCAATACGTGGTTCTTCTTTGGGTTTCCGGCGGCGGTTCTGCTTCTGATATGCTTCTGGTTC ATACTCTGTTTGCTGTATGTACGAAAAGGGTCGCGTGTGGCTTTGTCTGATTACATGGATAAAGCGCATTTGAAAGCGGA CCTCGAAGCTCTTGGTAAGTTTCTCACCTCAAGTACTCTATTCATTTCCATCTTTTGACAATAGTTATTAGAAAAAAAAC AGAGGAGGAGGGAAAGTTACACGAGGAAGATGAGTCAGGTAGTGACTAGTTTCCTTTCTATGTCGTTTTGTTTCTTTTGA ATTATTTGATTTATTTCTATCCTTCTCGTCTGCATTGATTGATAAGTAGTCCTCCCTCCGTCCTTAATTATAAGCTAAAG TTGTGAAAATCACACTTATTAAGAAAGGTTTAATTGATGCATTGGTTTTTGAAAAAAAATTTACAACTTTTCATGTTTAC CATAAAACTTTTTAATTATTATACTATGAATAGTGCTCCACTACCAATAAATGCAAAGATAAATATGGAAAGAAATATTA GCTTTTACAACTTTAGCTTATATTTAGTGACAAAATATAAGTCTCAACTTTATATTATAATTAGGGACGGAGGGAATAGT TAGATAAGATTCCATAGTTCTAGGGCCAACCTAAATGGACACATGTCATGTCTTTGCGGAGATGTCTCTAGCTAAAGTTT GAATTAAATCACACTAGATTTAGATAAACTTATAATTTTTAAGATAAGTGCATATGAAATTTAATATTTTATCACTTGTG TTAAATATAATTAGTATACGTATGGGCTATTTTTTGATGCTTAACAACAAATAAGCAAAACTGAAAACAGGAAAGCAAAA AAACCCCCACAGCCTAACAAAAGTTGTCCCCAGAGAGTCAGCCAATAACAACGGCTCCAGGTCAGGAGGGGGATCCTGAA CAAGGAGGAAATTTAAGTCTTGATTAGCTCTCATCTTAGCTAAGAAATCTGCGCATGCATTACCCTCACGCAAAGTGTGC ACCAGTCGCACCTCCCACAGGCGACGAAGCAGATCAACAGTGTTGTAAATCAACACTGCTAGCTCATGGAAATGAGTGGG GGGCTCCTAGACAAGAGTAACGACAAGCAATGAATCAGAATAACACACCACCTTGCGGAAACCTCGGTTCCACGCAATCA CCAAGCCATGGAAAATAGCAAAGAGCTCCATATGCAAAACTGTGGCCTGACCTCCATAGCCTACAAACCCTGTGATCCAG GGTCCAAGCGCATCACGAAGGCACCCACCAAAGCCGGAACGCTGCAGAGACCCGAGAGAACTCCCATCGCAGTTGATAGC AATTTCAGAACCTGTCGGAGCAATCCAAGAGACCAATCGAGGGGTAGAAGCTCGAGCCGGCTTCTCCCAAGCGTGTTGAA ACAGCACCTTCTGGTCCAGCACCGAGCGCACCAGCACATCATCTGGTATGGAAGTTTGCACATACCCTTGTAAAAAACAG AAGAAAAAAAATCTATTAGACAGAAAAATTAAGTTTACAAGAACTAAATTTTTCACATAAACCACATTCCATTAAATTAA GTAGATGCAATATCTATGGATAGGATCCCCTCAATATCGGGAGGAACATCCTCCATCCAAACAAAACACTGACCAAATAA AGTAAGCCATAAATTTTGTGGCCTTATTATCGTCGTGGCGAACATGACGCAAACAAAAGGAATTAGAACTAGAGAATATA CCTACACAATCAGACACAACTGAAGTTAAATACGACAATTGGAAGAAAAAGAAGACTAGGCACTAACAACCGTTAAATTA TCCATCTTAAATATCACATTCTTGAAGCCCATCTTGATTGTAAGACGAATTGCTAACCACACATCAAGTCCTTCAGCCAC GACCACACTTAGAGAATGAAACTCACTAGCTGCAGCAGATGCAAGGACCACACCGTGAGAGTCCCTCGCCACCATACCCA AAACACACGTTCCAGAGGAAGAAACAACTACATCCGTGTTAATTTTGACGACCCTCGCGGGTGGAGAGCACCAACCAATC ATGCACGAGTTGTCCCCATCCCATCGACCATCCACATCACTCATACCACCATCCGTAATCACTAATCAACATCACCCTCA CCGAGGAAGCTAGCCTCCAAGTTTGTTCTGGGTAGAGCTTCACTTGCTCGAACACCCATTTATTCCGGCGAGACCAAATA GCCTATAGCATCGTAATAACAGGTGGGAGATTTTTTATTCAATAATTAAGATTAAAAACTTTGCTACGATGTTGAAGATT TTTTTTTTTATTTTTATGAAATACAAATAGAATTATGTAGATGGTTTTTTTTTGTCTTAGACGGCAGATGCAATGACACT TCAACAAGTTTGGATAGAGTTTTAGAAAGCAAAAAAAATTATGGAATTTTATTTTCTAGTAAATACTACATAATTTTGAT TTTTGAAAATGAAATTCTGGTTGTCGCACATGACAGATGTTCTACGCGATGCTGGGACAACCAGTTCGACAATTCACAAC AGTAAACAACAAAAGCATAAAAGAAACAAAAACACAACACAAAAGTTGTTAACCCAGTTTGGTGAAACTTCTCCTACATC TGGAGGGCTTCGCCCAAAGAAAGGAAATTCACTATCTCAAGATTTAGGAACTACAGACACTCATGAACACCTCAGCTCAT AGTTCTTTTCCTAATCTACCCAGTGTTTTTCTACTTAGTATATCGACCTAAGTATGAGAGTCTCTCTCACTTTCTCTCAA TCACTGCCACAGTGATTGAACTTTCAATAAGCAACACAGGTTTGAAGAGATTACAACTCAACTAAAACAAACCAACTCTA TGTCATATGATGATCAATGGAGGCAGTAGAGTGGTGTACAAAATAACAGAATAAGGACTCACAAAACACAACCCTAAAAA CCCAATCCTTGGGTGCCCAACGCACACTTAGCAACTAGGGTTAACACTCCTTAAATAGTCGTTCTTCAGCAGGCATTGAT CTTCAATGGACTTTCACAAAAATAGAGTCCATAAACAGATCTGGAACAAATCTTTTTAAACCAGTAACAAATCTTATCAA ATAAGATTTGAACAAAAGATAACAACTTTCACAATTTAAACCAAATCAAATCATCTCCAACAGATTTGATTCCACTATAA TATATTCCAGATAGCACACAGAAGCTTCTTCAACAACCCTATATCTTGAATACCACGTAATCAAAGCACAGTTTCACAAA ACAAACATGCAACACACAGCAGCCCCGCAGGGACAAATGTCACAGGCATGATGTTACAACATCTGCTTCGACATCAGGTT GTTTTTTACAAAAAAACAGGCAACCAAAAGTAACAACAAAAAATAAAATAGTAAAACATTAGAACAATTAATGCCACACT TTTTTTTTTCATAAATTTATAAATTTAATTCTAAATTAAAATTTTTATGGTCCTTGCGATGAGTTTTGATTCTCGGGCCC TCATGCAAAATTCTAGCCATTCGTTTTTGCAAGGAATGGTTATGGAGTATGGAGAGCATAGAAGTTCCTTTCTTCATATT CACAATTTTTTAATTTTTATGTTTTTATCTAATTCGAGCATGATTGCTTTGTAATGGATTTGTGAAAAGTCTGACAATAA TGTGGTTTCATGAGATTTAAAAATGAGTATTCAAATTATAGTTGAAGATTTAATCCCTAAATTTTTATGTGTTGTACCTT GTTGTTTGCTTATATATATCTTTTATAATCCATTTTTTCCATTGAAGTTTAATAAGTTCTTCCTTTTGAAAGAGATTTAT ATTTTTGTTCAAAGATTCGCATTCCATTGGTAAACGATGGGCTGAAGCCCAACCACATACAGGTAGATTGATATCCCATA GTGAAATGGCTGATCCAATGAATTGGCTTCCCAAGCCCATTTGAACCAATCTCACATTGACAAAAAGGTATCCTTATATA AGTACTAAACAACGTAATCTTGATGGAAGATATGTGTAAGTATCTAGTTCAGGTTCGACCATAAATATATGTAAACAAAT CTTCATACGAACTTAGCTTTTAGAGTCCTTATTTTAGATATTGCTCGCACATGATTACTATACTTCATACTCTAGATATC AAGTCAAGTGCCTAAGTGAGGGAGTAGAAACATAAATAAGTCTTTATATTACTAAATAGGAAACAATTCTCTGCTAGCTT TTGGGGTTGGGTTAGTGTGCGCCTATCTCAAACTCAAGAGATACATGGTTAACATTTTTTTAGTTTTATTTTAAGATTAG AGTTTAAATTAACAAAAATTATTTTTACACATATATTCTCCTAAATAAGCTGATGCAGTTGCAATCCTATTATGGCTGTT GTAGGTCCAATGGCTTTTGCTGAGAAGATGGTGCTGTCTGTGTTCGGGGTATGCTCTGTCTAAAATCAATCCAATTTCAA TTTTTCATTTCTCAATCATGAATGAACATAATTCAATTTTTAACAATGGAATGCTAAATATAGTTGCTGATCATATTATG GATGACAAGAAGAATCTCAGATGACCTTCCTGGATGGGGAGCTTTATTCCATGGCCTTGTTGGTGATGGAAGTATCAGTG TATGTGATTGTGCTGTGTCTAGCTACTTTTGATGTTTTTCTTGTTGATTATTACTCATTGCACCTTGCATTGAAGTATCC AATCAATTAGAATGAAGACATGGTACCATGTATTGTAGGTTTTAGCAGCTGTCTTATTGTTCATAATCCCTAACATGAAG CAAAAGGGGGAGAAGCTAATGGACTGGAATGAATGCAAAAGGTTACCTTGGAACCTCATATTGCTTCTAGGAGCTGGATT TGCCTTAGCAGATGGAGTTCAATCTAGTGGCCTAGCAGATGTACTTTCAAGAGCCTTAGATTTCTTGCAAAATGTTCCAT ATTTGGCAATTGTTCCTGTTGTTACTCTTCTATGTAGCATTATTACTGAGTTCATCACATCCAATGATGCAACTGCAACC CTTCTTGTTCCACTTCTGTATCACATAGCCAAGACATTGCATGTGCATCCCCTGCTTCTTATGATCCCTGGAGGAATATC AACTGAGTTTGCATTCTGGCTTCCAACTTCAACACCATCAAATGTTGTTGGGTTTGCCACTGGACACATAGAAATTAAAG ACATGCTTAAAGTTGGTGTGCCACTTAAGCTTGCTGGGATTGCTGTGCTATCTCTTCTCATGCCATCACTGGGTGAGTTA CTGTGTTCACATTTAAGTTTGAGAAGATCAATTTGATTGAAAAATGATTCTGACTTGTAAGGTTTGTTGTTGCAGGAGCA ATTGTTTTTGGAACAAATGATGGCACTCAATAGGTGATAGATCATAGATGCAAACTCTTGATGGTTAGGTCCGTTAGGAT ATTGAATTATTAAATCCAAATTTCACTGTTTTGGATGGGTCTACATATGTATAGAGTATTGAGAAATATCACTAAAGTTT ATATTTTAAACAAAGAAAAAGCAAATGAAACAAAAAAAGGAGAAAAGATTCTAAGAAAACTAGAAAAGCTCCCGTAGGAT AACTCAAGTGGTCGGAGTTGAGGGACGTATGGGTTGGGTAGAGGGAGGACCAGGGATCGTTTCTGGCGGGTGTAATTTAT CTTTCTAATGTATAAAAAAAAACTAGAAAAGACAAAAGTTTTTTAATAGAGAAGGGATTGGATTATTAAATGATTGATAC ATGATCTTTGTAAGGCCTATTTATGATTCATTCAGTTATCTTATCTTGATTATAATTGTGATTACAGTTGTAAGACCCAT TTATCGGGAGAGAACTATTCACTTAACCTGATCTTCGAGCATCGAAGAATTAATCTCATGGCTATCGGCTATAAGATTGC TAATTAAGTGTACCTTCGAAATGGGAACCGTGTTAGGGTCAAACTTCTCACACCAATTAGATAATCACAGACACAAACAT CACCTAGAATAAAGAAGTGGGTGAATCAATAGCAACAAAGTTTGAAACTTGATGGAAAAATTGAAATGGATAGAGCAAAA GCAAGTGGAAAAATATGAGTTATGTGTGTCTCACAACAGACTGGAAAATCAGGGTGC 

CDS sequence (LotjaGi6g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGGAGAAAAAACTTCGTCAGCCGCTCCCGATGACAACCTGAAGGCGCCACTCCTCCCCCTCCGGGAACCAATCCA ACAAACACCCTGCACCTTCAAATCCAATATGCTAACACTCAAAAATTTCTGCATCATTCTAGGCCCCTTGTTGTCCCTCA TCATCTGCTTCTTAGTGAAGCTCGAGAATGCTCCGGCGACCAGCAAGAAAATGCTCGGCGTGATTGCTTGGGTTTTCACT TGGTGGATCACTGAGGCCGTTCCTCTTCCGGTCACCTCCATGTGTCCCCTGTTTCTGTTTCCCCTGTTTGGAATTTGCTC AGCTGATAAGGTAGCTCACTCTTACATGGATGATGTCATTACCTTGGTTTTGGGTAGTTTCATTCTCGCCCTCGCCGTTG AACGCTACAACGTTCACAGAAGATTGGCCTTGAATGTAACCTTGCTATTTTGTGGCGATCCCCTGAATCCAGCGATGTTA CTACTGGGGCTGTGCGCGACGGCGTTCTTCGTGAGCATGTGGCTACACAACGTGGCAGCGGCAGTGATGATGATGCCGGT GGCAACAGGGATCCTACATCGACTACCACCGGCGGAGGAGCAATCGGAAGTTGTAAACAAGTTCAGCAGGGCGGTGATTC TGACAGTGGTATACGCGACGCCGATAGGGGGAATAAGCACTCTAACAGGGACAGGTGTGAACCTGATACTGATCGGGATG TGGAAGAGCTTGGTTCCGGAGGGGAAGCCGATAAGCTTCAATACGTGGTTCTTCTTTGGGTTTCCGGCGGCGGTTCTGCT TCTGATATGCTTCTGGTTCATACTCTGTTTGCTGTATGTACGAAAAGGGTCGCGTGTGGCTTTGTCTGATTACATGGATA AAGCGCATTTGAAAGCGGACCTCGAAGCTCTTGGTCCAATGGCTTTTGCTGAGAAGATGGTGCTGTCTGTGTTCGGGTTG CTGATCATATTATGGATGACAAGAAGAATCTCAGATGACCTTCCTGGATGGGGAGCTTTATTCCATGGCCTTGTTGGTGA TGGAAGTATCAGTGTTTTAGCAGCTGTCTTATTGTTCATAATCCCTAACATGAAGCAAAAGGGGGAGAAGCTAATGGACT GGAATGAATGCAAAAGGTTACCTTGGAACCTCATATTGCTTCTAGGAGCTGGATTTGCCTTAGCAGATGGAGTTCAATCT AGTGGCCTAGCAGATGTACTTTCAAGAGCCTTAGATTTCTTGCAAAATGTTCCATATTTGGCAATTGTTCCTGTTGTTAC TCTTCTATGTAGCATTATTACTGAGTTCATCACATCCAATGATGCAACTGCAACCCTTCTTGTTCCACTTCTGTATCACA TAGCCAAGACATTGCATGTGCATCCCCTGCTTCTTATGATCCCTGGAGGAATATCAACTGAGTTTGCATTCTGGCTTCCA ACTTCAACACCATCAAATGTTGTTGGGTTTGCCACTGGACACATAGAAATTAAAGACATGCTTAAAGTTGGTGTGCCACT TAAGCTTGCTGGGATTGCTGTGCTATCTCTTCTCATGCCATCACTGGGAGCAATTGTTTTTGGAACAAATGATGGCACTC AATAG 

Protein sequence (LotjaGi6g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGEKTSSAAPDDNLKAPLLPLREPIQQTPCTFKSNMLTLKNFCIILGPLLSLIICFLVKLENAPATSKKMLGVIAWVFT WWITEAVPLPVTSMCPLFLFPLFGICSADKVAHSYMDDVITLVLGSFILALAVERYNVHRRLALNVTLLFCGDPLNPAML LLGLCATAFFVSMWLHNVAAAVMMMPVATGILHRLPPAEEQSEVVNKFSRAVILTVVYATPIGGISTLTGTGVNLILIGM WKSLVPEGKPISFNTWFFFGFPAAVLLLICFWFILCLLYVRKGSRVALSDYMDKAHLKADLEALGPMAFAEKMVLSVFGL LIILWMTRRISDDLPGWGALFHGLVGDGSISVLAAVLLFIIPNMKQKGEKLMDWNECKRLPWNLILLLGAGFALADGVQS SGLADVLSRALDFLQNVPYLAIVPVVTLLCSIITEFITSNDATATLLVPLLYHIAKTLHVHPLLLMIPGGISTEFAFWLP TSTPSNVVGFATGHIEIKDMLKVGVPLKLAGIAVLSLLMPSLGAIVFGTNDGTQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 42 42 -
PANTHER 10 531 522 3.8E-207
PANTHER 10 531 522 3.8E-207
TMHMM 37 59 23 -
Phobius 43 61 19 -
Pfam 52 526 475 8.6E-70
Phobius 62 80 19 -
TIGRFAM 65 517 453 1.1E-65
CDD 72 523 452 1.73376E-61
TMHMM 74 106 33 -
Phobius 81 107 27 -
Phobius 108 118 11 -
TMHMM 119 138 20 -
Phobius 119 138 20 -
Phobius 139 157 19 -
Phobius 158 175 18 -
TMHMM 158 180 23 -
Phobius 176 210 35 -
Phobius 211 236 26 -
TMHMM 216 238 23 -
Phobius 237 255 19 -
Phobius 256 280 25 -
TMHMM 258 280 23 -
Phobius 281 300 20 -
TMHMM 301 323 23 -
Phobius 301 327 27 -
Phobius 328 338 11 -
TMHMM 338 360 23 -
Phobius 339 361 23 -
Phobius 362 381 20 -
TMHMM 380 402 23 -
Phobius 382 399 18 -
Phobius 400 418 19 -
TMHMM 417 439 23 -
Phobius 419 437 19 -
Phobius 438 457 20 -
Phobius 458 479 22 -
TMHMM 460 482 23 -
Phobius 480 508 29 -
Phobius 509 528 20 -
TMHMM 509 528 20 -
Phobius 529 534 6 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0286400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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